mRNA_C-tenellus_contig1053.3.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig1053.3.1 vs. uniprot
Match: D7G8I0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8I0_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 5.130e-21 Identity = 63/142 (44.37%), Postives = 82/142 (57.75%), Query Frame = 1 Query: 7 PYLELITGSTSKTKTPCTSIAGVYTDFLNFLYTVAPGDTSQDLSYSGVNAVLLV------------NTTVVEDKSGVDANTTLPAPGSELSMT-------------DESNAVVVDTSNTVLHVTASNDDGVYYVGESIFLEV 357 P LEL T + + + AG + D L F YTV+PGD S DLSY+ A+ L+ +TT + D+SG D N TLPA GSELS+T + A+VVDTSN VL+VT++N DGVYY GESIF++V Sbjct: 102 PTLELATATPFDVVSCSSPSAGSFADSLTFSYTVSPGDYSSDLSYTNSGALSLLVSASANDSESTTSTTEIVDESGNDVNVTLPAVGSELSVTGGEEWRRLEAEEGEGEGALVVDTSNVVLYVTSTNGDGVYYTGESIFVQV 243
BLAST of mRNA_C-tenellus_contig1053.3.1 vs. uniprot
Match: A0A4V2BI36_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4V2BI36_9PROT) HSP 1 Score: 57.4 bits (137), Expect = 3.910e-7 Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = 1 Query: 1 GEPYLELITGSTSKTKTPCTSIAGVYTDFLNFLYTVAPGDTSQDLSYSGVNAVLLVNTTVVEDKSGVDANTTLPAPGSELSMTDESNAVVVDT 279 G+ L++ TGST +T ++G T L FLYTV PGD S DL VN + L NT +++D G++AN T APG+ S++ + A+V+DT Sbjct: 53 GDMQLKVETGSTDQT---AIYMSGSGTTALLFLYTVQPGDISSDLDLVSVNPLTL-NTALIKDIDGINANLTFVAPGAAGSLS-AARAIVIDT 140
BLAST of mRNA_C-tenellus_contig1053.3.1 vs. uniprot
Match: A0A4Q6CG86_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6CG86_9PROT) HSP 1 Score: 53.5 bits (127), Expect = 2.170e-6 Identity = 37/93 (39.78%), Postives = 50/93 (53.76%), Query Frame = 1 Query: 1 GEPYLELITGSTSKTKTPCTSIAGVYTDFLNFLYTVAPGDTSQDLSYSGVNAVLLVNTTVVEDKSGVDANTTLPAPGSELSMTDESNAVVVDT 279 G P L+L TG+T + T ++G T L F Y V GD S DL Y+ A+ L + G+DAN TLPAPGS S+ + +V+DT Sbjct: 66 GTPSLKLETGATDRL---ATYVSGSGTTTLIFNYAVQAGDASLDLDYTDTAALELSGGLIKSAADGLDANLTLPAPGSSNSL-GSNKQIVIDT 154
BLAST of mRNA_C-tenellus_contig1053.3.1 vs. uniprot
Match: I4BBR8_TURPD (Uncharacterized protein n=2 Tax=Turneriella TaxID=338321 RepID=I4BBR8_TURPD) HSP 1 Score: 52.0 bits (123), Expect = 3.110e-5 Identity = 41/120 (34.17%), Postives = 64/120 (53.33%), Query Frame = 1 Query: 1 GEPYLELITGSTSKTKTPCTSIAGVYTDFLNFLYTVAPGDTSQDLSYSGVNAVLLVNTTVVEDKSGVDANTTLPAPGSELSMTDESNAVVVD-TSNTVLHVTASNDDGVYYVGESIFLEV 357 G P L L T+K ++G T LNF+YTVA G+++ DL + +A L N + D G +A TLP G + S A+V+D + TV ++T+S DG Y G+++ ++V Sbjct: 1483 GTPQLTLGLSPTAKA---VNYVSGSGTTTLNFIYTVAAGESTNDLEVNNTSA-LNANGGTLRDAIGNNATLTLPVGGG--TSLGGSKAIVIDGVAPTVTNITSSLADGTYRAGQAVPIQV 1596
BLAST of mRNA_C-tenellus_contig1053.3.1 vs. uniprot
Match: UPI0016021511 (gliding motility-associated C-terminal domain-containing protein n=1 Tax=Pedobacter gandavensis TaxID=2679963 RepID=UPI0016021511) HSP 1 Score: 51.6 bits (122), Expect = 4.220e-5 Identity = 34/90 (37.78%), Postives = 49/90 (54.44%), Query Frame = 1 Query: 88 LNFLYTVAPGDTSQDLSYSGVNAVLLVNTTVVEDKSGVDANTTLPAPGSELSMTDESNAVVVDTSNTVLHVTASNDDGVYYVGESIFLEV 357 L F YTVA GD+S DL YS +N++ L N + D +A +LP PGS S+ SN + T+ VTA +G Y ++I ++V Sbjct: 341 LTFTYTVADGDSSDDLDYSTINSLEL-NGGSITDLQSQNAQLSLPLPGSAESLGGSSNLKIDALKPTISTVTAVTPNGSYSATQNISIQV 429 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1053.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig1053.3.1 >prot_C-tenellus_contig1053.3.1 ID=prot_C-tenellus_contig1053.3.1|Name=mRNA_C-tenellus_contig1053.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=119bp GEPYLELITGSTSKTKTPCTSIAGVYTDFLNFLYTVAPGDTSQDLSYSGVback to top mRNA from alignment at C-tenellus_contig1053:10792..11148- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig1053.3.1 ID=mRNA_C-tenellus_contig1053.3.1|Name=mRNA_C-tenellus_contig1053.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=357bp|location=Sequence derived from alignment at C-tenellus_contig1053:10792..11148- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig1053:10792..11148- >mRNA_C-tenellus_contig1053.3.1 ID=mRNA_C-tenellus_contig1053.3.1|Name=mRNA_C-tenellus_contig1053.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=357bp|location=Sequence derived from alignment at C-tenellus_contig1053:10792..11148- (Choristocarpus tenellus KU2346)back to top |