mRNA_C-tenellus_contig1053.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1053.3.1
Unique NamemRNA_C-tenellus_contig1053.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1053.3.1 vs. uniprot
Match: D7G8I0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8I0_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 5.130e-21
Identity = 63/142 (44.37%), Postives = 82/142 (57.75%), Query Frame = 1
Query:    7 PYLELITGSTSKTKTPCTSIAGVYTDFLNFLYTVAPGDTSQDLSYSGVNAVLLV------------NTTVVEDKSGVDANTTLPAPGSELSMT-------------DESNAVVVDTSNTVLHVTASNDDGVYYVGESIFLEV 357
            P LEL T +     +  +  AG + D L F YTV+PGD S DLSY+   A+ L+            +TT + D+SG D N TLPA GSELS+T             +   A+VVDTSN VL+VT++N DGVYY GESIF++V
Sbjct:  102 PTLELATATPFDVVSCSSPSAGSFADSLTFSYTVSPGDYSSDLSYTNSGALSLLVSASANDSESTTSTTEIVDESGNDVNVTLPAVGSELSVTGGEEWRRLEAEEGEGEGALVVDTSNVVLYVTSTNGDGVYYTGESIFVQV 243          
BLAST of mRNA_C-tenellus_contig1053.3.1 vs. uniprot
Match: A0A4V2BI36_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4V2BI36_9PROT)

HSP 1 Score: 57.4 bits (137), Expect = 3.910e-7
Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = 1
Query:    1 GEPYLELITGSTSKTKTPCTSIAGVYTDFLNFLYTVAPGDTSQDLSYSGVNAVLLVNTTVVEDKSGVDANTTLPAPGSELSMTDESNAVVVDT 279
            G+  L++ TGST +T      ++G  T  L FLYTV PGD S DL    VN + L NT +++D  G++AN T  APG+  S++  + A+V+DT
Sbjct:   53 GDMQLKVETGSTDQT---AIYMSGSGTTALLFLYTVQPGDISSDLDLVSVNPLTL-NTALIKDIDGINANLTFVAPGAAGSLS-AARAIVIDT 140          
BLAST of mRNA_C-tenellus_contig1053.3.1 vs. uniprot
Match: A0A4Q6CG86_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6CG86_9PROT)

HSP 1 Score: 53.5 bits (127), Expect = 2.170e-6
Identity = 37/93 (39.78%), Postives = 50/93 (53.76%), Query Frame = 1
Query:    1 GEPYLELITGSTSKTKTPCTSIAGVYTDFLNFLYTVAPGDTSQDLSYSGVNAVLLVNTTVVEDKSGVDANTTLPAPGSELSMTDESNAVVVDT 279
            G P L+L TG+T +     T ++G  T  L F Y V  GD S DL Y+   A+ L    +     G+DAN TLPAPGS  S+   +  +V+DT
Sbjct:   66 GTPSLKLETGATDRL---ATYVSGSGTTTLIFNYAVQAGDASLDLDYTDTAALELSGGLIKSAADGLDANLTLPAPGSSNSL-GSNKQIVIDT 154          
BLAST of mRNA_C-tenellus_contig1053.3.1 vs. uniprot
Match: I4BBR8_TURPD (Uncharacterized protein n=2 Tax=Turneriella TaxID=338321 RepID=I4BBR8_TURPD)

HSP 1 Score: 52.0 bits (123), Expect = 3.110e-5
Identity = 41/120 (34.17%), Postives = 64/120 (53.33%), Query Frame = 1
Query:    1 GEPYLELITGSTSKTKTPCTSIAGVYTDFLNFLYTVAPGDTSQDLSYSGVNAVLLVNTTVVEDKSGVDANTTLPAPGSELSMTDESNAVVVD-TSNTVLHVTASNDDGVYYVGESIFLEV 357
            G P L L    T+K       ++G  T  LNF+YTVA G+++ DL  +  +A L  N   + D  G +A  TLP  G   +    S A+V+D  + TV ++T+S  DG Y  G+++ ++V
Sbjct: 1483 GTPQLTLGLSPTAKA---VNYVSGSGTTTLNFIYTVAAGESTNDLEVNNTSA-LNANGGTLRDAIGNNATLTLPVGGG--TSLGGSKAIVIDGVAPTVTNITSSLADGTYRAGQAVPIQV 1596          
BLAST of mRNA_C-tenellus_contig1053.3.1 vs. uniprot
Match: UPI0016021511 (gliding motility-associated C-terminal domain-containing protein n=1 Tax=Pedobacter gandavensis TaxID=2679963 RepID=UPI0016021511)

HSP 1 Score: 51.6 bits (122), Expect = 4.220e-5
Identity = 34/90 (37.78%), Postives = 49/90 (54.44%), Query Frame = 1
Query:   88 LNFLYTVAPGDTSQDLSYSGVNAVLLVNTTVVEDKSGVDANTTLPAPGSELSMTDESNAVVVDTSNTVLHVTASNDDGVYYVGESIFLEV 357
            L F YTVA GD+S DL YS +N++ L N   + D    +A  +LP PGS  S+   SN  +     T+  VTA   +G Y   ++I ++V
Sbjct:  341 LTFTYTVADGDSSDDLDYSTINSLEL-NGGSITDLQSQNAQLSLPLPGSAESLGGSSNLKIDALKPTISTVTAVTPNGSYSATQNISIQV 429          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1053.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G8I0_ECTSI5.130e-2144.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4V2BI36_9PROT3.910e-741.94Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A4Q6CG86_9PROT2.170e-639.78Uncharacterized protein (Fragment) n=1 Tax=Proteob... [more]
I4BBR8_TURPD3.110e-534.17Uncharacterized protein n=2 Tax=Turneriella TaxID=... [more]
UPI00160215114.220e-537.78gliding motility-associated C-terminal domain-cont... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1053contigC-tenellus_contig1053:10792..11148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G8I0
PFAMsYHYH
Model size357
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.41e-22
EggNOG OGs2CN6T@1|root,2QU8Z@2759|Eukaryota
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789136.3766677-CDS-C-tenellus_contig1053:10791..111481680789136.3766677-CDS-C-tenellus_contig1053:10791..11148Choristocarpus tenellus KU2346CDSC-tenellus_contig1053 10792..11148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1053.3.1prot_C-tenellus_contig1053.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1053 10792..11148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1053.3.1

>prot_C-tenellus_contig1053.3.1 ID=prot_C-tenellus_contig1053.3.1|Name=mRNA_C-tenellus_contig1053.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=119bp
GEPYLELITGSTSKTKTPCTSIAGVYTDFLNFLYTVAPGDTSQDLSYSGV
NAVLLVNTTVVEDKSGVDANTTLPAPGSELSMTDESNAVVVDTSNTVLHV
TASNDDGVYYVGESIFLEV
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mRNA from alignment at C-tenellus_contig1053:10792..11148-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1053.3.1 ID=mRNA_C-tenellus_contig1053.3.1|Name=mRNA_C-tenellus_contig1053.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=357bp|location=Sequence derived from alignment at C-tenellus_contig1053:10792..11148- (Choristocarpus tenellus KU2346)
GGGGAGCCATACCTGGAACTCATCACTGGCTCCACATCGAAAACAAAGAC GCCTTGTACATCCATTGCAGGAGTCTACACTGACTTCCTCAACTTCCTCT ACACAGTTGCCCCGGGTGATACCTCCCAAGACTTATCATACTCTGGTGTC AATGCCGTTTTACTGGTCAATACCACAGTGGTGGAGGACAAAAGTGGTGT TGATGCCAACACCACACTACCTGCACCTGGATCTGAGCTGTCAATGACAG ACGAGAGCAATGCTGTGGTGGTGGACACATCAAATACTGTGCTGCATGTG ACCGCTAGCAATGACGATGGGGTATACTATGTGGGGGAGAGCATCTTCTT AGAGGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig1053:10792..11148-

>mRNA_C-tenellus_contig1053.3.1 ID=mRNA_C-tenellus_contig1053.3.1|Name=mRNA_C-tenellus_contig1053.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=357bp|location=Sequence derived from alignment at C-tenellus_contig1053:10792..11148- (Choristocarpus tenellus KU2346)
GGGGAGCCATACCTGGAACTCATCACTGGCTCCACATCGAAAACAAAGAC
GCCTTGTACATCCATTGCAGGAGTCTACACTGACTTCCTCAACTTCCTCT
ACACAGTTGCCCCGGGTGATACCTCCCAAGACTTATCATACTCTGGTGTC
AATGCCGTTTTACTGGTCAATACCACAGTGGTGGAGGACAAAAGTGGTGT
TGATGCCAACACCACACTACCTGCACCTGGATCTGAGCTGTCAATGACAG
ACGAGAGCAATGCTGTGGTGGTGGACACATCAAATACTGTGCTGCATGTG
ACCGCTAGCAATGACGATGGGGTATACTATGTGGGGGAGAGCATCTTCTT
AGAGGTG
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