mRNA_C-tenellus_contig10414.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10414.1.1
Unique NamemRNA_C-tenellus_contig10414.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10414.1.1 vs. uniprot
Match: A0A6H5JWC3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWC3_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 2.550e-57
Identity = 111/230 (48.26%), Postives = 154/230 (66.96%), Query Frame = 1
Query:   10 LWGAKRADMKALAKIPSSDCKIYQLCKTKAGFVPYYLRLVMVRMLHSNAKHALAYAFLLRLCEGSEEVPTRVKAMMCYISATNAGNNILRAHFAFMAYRAGVSISRLVEITRGAGDASVGSTSGEPDDKEEMAMAMAQAASYDANSLLSPELVSVISWLYSPAAVIELVTTISLQSAFHRWTSVYVPMSYEPEVENFLGMDGNGVMLDLPLEGPAFKCQEDWDELARETR 699
            ++G K AD ++L KIP+SD  ++  CK   GFVPYY+R    +M H+NAK AL++ FLLRLC+GS+EVP ++K +M Y  ATNA NN+LRAHFAFMA R+GV++SRL+++T       + ST G     E+ AMA AQAAS+    + +  L  +IS L+SP AVIEL+ T+S++ A HRWTSVYVP  YEPE++ F+     G  L +P   P    Q+ W+E+A + R
Sbjct:  280 IFGGKMADNRSLKKIPTSDSALFSQCKKDGGFVPYYIR----QMQHANAKKALSFGFLLRLCQGSDEVPVQLKQLMAYQCATNAENNVLRAHFAFMAMRSGVTLSRLIQVT------DITSTGGGDSAAEDAAMAFAQAASWTPTRMTAA-LAGLISRLFSPPAVIELLITVSVEFAIHRWTSVYVPRRYEPEIDEFV--KEYGPALGIP-HSPCTADQQKWEEIAAQKR 495          
BLAST of mRNA_C-tenellus_contig10414.1.1 vs. uniprot
Match: D7FMN7_ECTSI (Probable fusion protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMN7_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 4.200e-52
Identity = 107/228 (46.93%), Postives = 144/228 (63.16%), Query Frame = 1
Query:   16 GAKRADMKALAKIPSSDCKIYQLCKTKAGFVPYYLRLVMVRMLHSNAKHALAYAFLLRLCEGSEEVPTRVKAMMCYISATNAGNNILRAHFAFMAYRAGVSISRLVEITRGAGDASVGSTSGEPDDKEEMAMAMAQAASYDANSLLSPELVSVISWLYSPAAVIELVTTISLQSAFHRWTSVYVPMSYEPEVENFLGMDGNGVMLDLPLEGPAFKCQEDWDELARETR 699
            GAK AD  +L   P+++  + Q C   AGFVPYYL    V+M HS A++A  +AF LRLC+GSEEVP ++K +MCYI ATNAGN ILRAH+AFMA+R G+ I +L   T      +V +     D K+  AMA+A+A S    S +SP LV ++   YSPA VIEL+ T+SL   +HRWT++Y+P  YEPEV  F+    +G  L +  E P  K Q  W+ +A+E R
Sbjct:  198 GAKLADRASLKNTPTAEQLVAQKCMELAGFVPYYL----VQMKHSQARNAFVWAFTLRLCQGSEEVPAQLKQLMCYICATNAGNTILRAHYAFMAHRNGMPIRQLATATNTDSSEAVAADD-TIDAKQVAAMALAEACS-GTPSTVSPVLVGLLMRQYSPAGVIELIATVSLAFMYHRWTAIYMPREYEPEVLKFV--QEHGAALGIDPERPCTKDQSTWEGIAKEAR 417          
BLAST of mRNA_C-tenellus_contig10414.1.1 vs. uniprot
Match: A0A6H5JXG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXG8_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 6.990e-38
Identity = 90/187 (48.13%), Postives = 117/187 (62.57%), Query Frame = 1
Query:   10 LWGAKRADMKALAKIPSSDCKIYQLCKTKAGFVPYYLRLVMVRMLHSNAKHALAYAFLLRLCEGSEEVPTRVKAMMCYISATNAGNNILRAHFAFMAYRAGVSISRLVEITRGAGDASVGSTSGEPDDKEEMAMAMAQAASYDANSLLSPELVSVISWLYSPAAVIELVTTISLQSAFHRWTSVYVP 570
            L GAK AD  +L   P+S+  + QLC  +AGF PYYL +   +   +NA++AL +AF  RLC+GSEEVP   K  M Y+ AT+A N ILRAHFAFMA+R GVS+S L   T   GD     T G  D K+  A++MA+A       L   ELV+++   Y+PA VIELV T+SL S   RWTS+Y+P
Sbjct:  218 LVGAKMADSASLKGTPTSEKNVKQLCTERAGFAPYYL-VGEEKSKMANARNALVWAFTRRLCQGSEEVPAATKQTMGYMLATSADNTILRAHFAFMAHRNGVSVSNLASATAEGGD-----TDGGEDLKKAAALSMARACGGTPGPL-PRELVALLMRQYTPAGVIELVNTLSLVSMLQRWTSIYMP 397          
BLAST of mRNA_C-tenellus_contig10414.1.1 vs. uniprot
Match: D7G5G2_ECTSI (Probable fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G2_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 7.960e-23
Identity = 72/152 (47.37%), Postives = 89/152 (58.55%), Query Frame = 1
Query:  253 TNAGNNILRAHFAFMAYRAGVSISRLVEITRGAGDASVGSTSGEPDDKEEMAMAMAQAASYDANSLLSP---ELVSVISWLYSPAAVIELVTTISLQSAFHRWTSVYVPMSYEPEVENFLGMDGNGVMLDLPLEGPAFKCQEDWDELARETR 699
            T+A N ILRAHFAFMA+R GVS+S L   T   GD     T G  D K+  A++MA+A S      L P   ELV+++   Y+PA VIELV T+SL S   RWTS+Y+P  YEPEV  F+  + NG  L L    P  + Q  W ELA E R
Sbjct:  104 TSADNTILRAHFAFMAHRNGVSVSDLANATAEGGD-----TDGGEDLKKAAALSMARACS----GTLGPMPRELVALLMRQYTPAGVIELVNTLSLVSMLQRWTSIYMPKQYEPEVLVFV--EENGSALSLDPTKPCTEEQSGWRELAAEIR 244          
BLAST of mRNA_C-tenellus_contig10414.1.1 vs. uniprot
Match: A0A850G4F7_9DELT (Uncharacterized protein n=1 Tax=Pseudenhygromyxa sp. WMMC2535 TaxID=2712867 RepID=A0A850G4F7_9DELT)

HSP 1 Score: 94.7 bits (234), Expect = 7.840e-19
Identity = 76/223 (34.08%), Postives = 113/223 (50.67%), Query Frame = 1
Query:   31 DMKALAKIPSSDCKIYQLCKTKAGFVPYYLRLVMVRMLHSNAKHALAYAFLLRLCEGSEEVPTRVKAMMCYISATNAGNNILRAHFAFMAYRAGVSISRLVEITRGAGDASVGSTSGEPDDKEEMAMAMAQAASYDANSLLSPELVSVISWLYSPAAVIELVTTISLQSAFHRWTSVYVPMSYEPEVENFLGMDGNGVMLDLPLEGPAFKCQEDWDELARETR 699
            D  AL  I     K+++  +   GFVPYY+     R+  + AK   A+  + R+   + E+P  +K   C+ +A N+ N++L AHFA  A RAG SI +L    RGA       T G    +E  A A+A+ AS    + L  EL+  ++  +SP  +IELVT +S+Q  F R+ S Y   SYE  V +F+    +G +L LP        +  WDEL +  R
Sbjct:  254 DRGALETIAKRPAKVHEQVREAMGFVPYYVE----RVERTPAKRVFAHMLVERVQSSAGELPVWLKHAACFAAARNSKNDLLAAHFAHWAMRAGASIEQL----RGA--LMPRPTGG----REATAFALAKVASSQP-ATLGHELLERVTSQFSPPEIIELVTMLSIQGMFQRYVSTYPVDSYESPVADFV--TEHGTLLGLPRRPSQVSAR--WDELCQRAR 457          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10414.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JWC3_9PHAE2.550e-5748.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FMN7_ECTSI4.200e-5246.93Probable fusion protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JXG8_9PHAE6.990e-3848.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5G2_ECTSI7.960e-2347.37Probable fusion protein n=1 Tax=Ectocarpus silicul... [more]
A0A850G4F7_9DELT7.840e-1934.08Uncharacterized protein n=1 Tax=Pseudenhygromyxa s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10414contigC-tenellus_contig10414:148..1567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog391625.PPSIR1_29453
PFAMsCMD,HWE_HK
Model size705
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.04e-10
EggNOG OGsCOG2128@1|root,COG2128@2|Bacteria
Descriptionhydroperoxide reductase activity
Cds size705
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789130.4949176-CDS-C-tenellus_contig10414:147..4891680789130.4949176-CDS-C-tenellus_contig10414:147..489Choristocarpus tenellus KU2346CDSC-tenellus_contig10414 148..489 -
1680789130.5132453-CDS-C-tenellus_contig10414:588..8171680789130.5132453-CDS-C-tenellus_contig10414:588..817Choristocarpus tenellus KU2346CDSC-tenellus_contig10414 589..817 -
1680789130.5281775-CDS-C-tenellus_contig10414:1433..15671680789130.5281775-CDS-C-tenellus_contig10414:1433..1567Choristocarpus tenellus KU2346CDSC-tenellus_contig10414 1434..1567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10414.1.1prot_C-tenellus_contig10414.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10414 148..1567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10414.1.1

>prot_C-tenellus_contig10414.1.1 ID=prot_C-tenellus_contig10414.1.1|Name=mRNA_C-tenellus_contig10414.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=235bp
MFFLWGAKRADMKALAKIPSSDCKIYQLCKTKAGFVPYYLRLVMVRMLHS
NAKHALAYAFLLRLCEGSEEVPTRVKAMMCYISATNAGNNILRAHFAFMA
YRAGVSISRLVEITRGAGDASVGSTSGEPDDKEEMAMAMAQAASYDANSL
LSPELVSVISWLYSPAAVIELVTTISLQSAFHRWTSVYVPMSYEPEVENF
LGMDGNGVMLDLPLEGPAFKCQEDWDELARETRQR
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mRNA from alignment at C-tenellus_contig10414:148..1567-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10414.1.1 ID=mRNA_C-tenellus_contig10414.1.1|Name=mRNA_C-tenellus_contig10414.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1420bp|location=Sequence derived from alignment at C-tenellus_contig10414:148..1567- (Choristocarpus tenellus KU2346)
ATGTTTTTTCTTTGGGGGGCTAAGAGGGCAGATATGAAGGCCCTGGCGAA GATTCCTTCTAGTGACTGCAAGATCTATCAGCTCTGCAAGACCAAGGCAG GCTTTGTCCCCTACTATCTAAGGCTAGTGATGGTGTCTTCAGAAATTGTG ATTTGACTGCAATCTTTTGCATTGTGATTGGGATAGTAGTTACTTCAATA CATATAATTTCAGAGCTCCTACACAGATATATGGATTCCATCTACTGACA GAAAGATCTATCAGCTGTACAAGACCAAGTCAGGCTTTGTCCCCTACTAC GCAAAGCTAGTGATTTTTTCTTCAGAGATTTTTGTAATTTTTTTTGTCCT TAGCGATGTGATTGGGATAATATTTTTTTCAATTGATACAATTTCAGTAC CCCTACAAAGATGTATGCCTACATCTAATCTTTTTTTGGTGTGTAGATGT GAAATGATGGCTGATGTTCTGTGTACTAAGTTGTAGGTGAAACGTTTACA AAAACAGGTCGGGTACCATGTCATGAGATTGGCATTTTCTGTGAAGATTA TTTCTCCAACAACTTTTGTCACGTGCACACTACCTTGTATGCCCGATATT TCAAAGTTACATGTAATTGCAAGGTTGAAAATTGTGTATATTCATGCAAT CTTCCAACCTTTAGTTGATGCGTTCGATACTTCCTCTACCTGTGAGTATC CTCATTTCAAATACTAACTTTTTGGCACACATTATATATCCGACACATAG GCGCATGCTGCACTCCAATGCAAAGCACGCCTTGGCATACGCCTTCCTGC TACGCCTGTGCGAGGGCTCTGAGGAGGTGCCCACACGTGTCAAGGCCATG ATGTGCTACATCTCTGCCACAAACGCAGGAAACAACATCCTCAGAGCCCA CTTTGCATTCATGGCCTACAGAGCCGGAGTGTCGATTTCTCGCCTTGTCG AAATCACACGAGGAGCAGGGGATGCATCCGTAGCAACCACAGATGCTGGA GAAGCAGTTGTCGCAGCTGAGACTCATTTTATGCTCTCACCATCGGAAAA GAGAGTCAAAGCTGCCAGCATGGGTGAGGTGGGGAGCACATCTGGTGAGC CTGACGACAAGGAGGAGATGGCGATGGCGATGGCTCAAGCTGCAAGTTAT GACGCCAACTCTTTGTTGTCACCCGAGCTTGTGTCTGTCATCTCTTGGCT TTATTCGCCGGCAGCTGTAATTGAGCTGGTTACTACTATCTCCTTACAGT CTGCCTTTCATCGATGGACATCAGTGTACGTGCCCATGTCATATGAGCCT GAAGTAGAGAATTTCTTGGGCATGGACGGGAATGGGGTCATGCTCGACCT GCCTCTGGAAGGACCTGCCTTCAAGTGTCAGGAGGATTGGGATGAGCTTG CTAGGGAGACAAGGCAGAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig10414:148..1567-

>mRNA_C-tenellus_contig10414.1.1 ID=mRNA_C-tenellus_contig10414.1.1|Name=mRNA_C-tenellus_contig10414.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=705bp|location=Sequence derived from alignment at C-tenellus_contig10414:148..1567- (Choristocarpus tenellus KU2346)
ATGTTTTTTCTTTGGGGGGCTAAGAGGGCAGATATGAAGGCCCTGGCGAA
GATTCCTTCTAGTGACTGCAAGATCTATCAGCTCTGCAAGACCAAGGCAG
GCTTTGTCCCCTACTATCTAAGGCTAGTGATGGTGCGCATGCTGCACTCC
AATGCAAAGCACGCCTTGGCATACGCCTTCCTGCTACGCCTGTGCGAGGG
CTCTGAGGAGGTGCCCACACGTGTCAAGGCCATGATGTGCTACATCTCTG
CCACAAACGCAGGAAACAACATCCTCAGAGCCCACTTTGCATTCATGGCC
TACAGAGCCGGAGTGTCGATTTCTCGCCTTGTCGAAATCACACGAGGAGC
AGGGGATGCATCCGTGGGGAGCACATCTGGTGAGCCTGACGACAAGGAGG
AGATGGCGATGGCGATGGCTCAAGCTGCAAGTTATGACGCCAACTCTTTG
TTGTCACCCGAGCTTGTGTCTGTCATCTCTTGGCTTTATTCGCCGGCAGC
TGTAATTGAGCTGGTTACTACTATCTCCTTACAGTCTGCCTTTCATCGAT
GGACATCAGTGTACGTGCCCATGTCATATGAGCCTGAAGTAGAGAATTTC
TTGGGCATGGACGGGAATGGGGTCATGCTCGACCTGCCTCTGGAAGGACC
TGCCTTCAAGTGTCAGGAGGATTGGGATGAGCTTGCTAGGGAGACAAGGC
AGAGG
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