mRNA_C-tenellus_contig10387.1.3 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10387.1.3
Unique NamemRNA_C-tenellus_contig10387.1.3
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10387.1.3 vs. uniprot
Match: D8LTN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTN9_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.160e-9
Identity = 38/84 (45.24%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:   52 PPTDSDIVVGAGVVGAAAGLIVSGPLLALGVGAGVMGLAAAGNNKAGDVARSTGKVGVAAFKEGKKINERHHISEKVRAGLRST 303
            PP  + +V GA +VGA  GL++SGPL+A+G+GAG         ++AGDVARSTG+ G+A  ++GK+IN ++ +++KV+    ST
Sbjct:   16 PP--AGVVGGAALVGATTGLLLSGPLVAIGLGAGAAACCLR-RDQAGDVARSTGQAGLAVVEKGKEINTQYGVADKVKGAAHST 96
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BLAST of mRNA_C-tenellus_contig10387.1.3 vs. uniprot
Match: A0A7S0QJ43_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QJ43_9CRYP)

HSP 1 Score: 63.2 bits (152), Expect = 1.300e-9
Identity = 40/90 (44.44%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:   58 TDSDIVVGAGVVGAAAGLIVSGPLLALGVGAGVMGLAAAGNNKAGDVARSTGKVGVAAFKEGKKINERHHISEKVRAGLRSTVNKAKELD 327
            +D  +V GA V GAA G++V GPL+ L VGAG    AA   N+ GDVARS G   VA  K   K ++ H++S  ++      +NKAKEL+
Sbjct:   46 SDDQVVAGAAVAGAAVGVLVGGPLIGL-VGAGAAAYAATCENQVGDVARSAGTTTVAMGKRLAKYDKDHNVSANIKTAATGAINKAKELN 134
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BLAST of mRNA_C-tenellus_contig10387.1.3 vs. uniprot
Match: D8LTN6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTN6_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.600e-9
Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:   73 VVGAGVVGAAAG-LIVSGPLLALGVGAGVMGLAAAGNNKAGDVARSTGKVGVAAFKEGKKINERHHISEKVRAGLRSTVNKAKELDHEHKIV 345
            VVGAG VG  AG L+    L++ G+G   M +AA+  + AGD+ARS+G++ VAAF  G  +NER+H +E++  G + T  + K+ D EH +V
Sbjct:   60 VVGAGAVGVLAGQLVFQSLLISAGLGVTAMTIAASSADGAGDIARSSGRMAVAAFDRGADLNERYHFTERLVNGAKITGWRLKQFDQEHAVV 151
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BLAST of mRNA_C-tenellus_contig10387.1.3 vs. uniprot
Match: A0A7S1U135_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U135_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 5.180e-5
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:   64 SDIVVGAGVVGAAAGLIVSGPLLALGVGAGVMGLAAAGNNKAGDVARSTGKVGVAAFKEGKKINERHHISEKVRA 288
            S +V GA   GA AGL+VSGP++A+  GAG    AA  ++  GD AR+TG    A + + K+I+  + I++KV+A
Sbjct:   46 SRVVAGAAAAGAIAGLLVSGPIVAV-AGAGAAAYAATRSDAVGDAARATGAATAAGYDKAKEIDAEYKITDKVKA 119
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10387.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LTN9_ECTSI1.160e-945.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0QJ43_9CRYP1.300e-944.44Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
D8LTN6_ECTSI1.600e-943.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1U135_9STRA5.180e-542.67Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10387contigC-tenellus_contig10387:880..1958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LTN9
Model size396
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons3
Evalue1.91e-10
EggNOG OGs2E68G@1|root,2SCZE@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-28_003380.1
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789129.1993577-CDS-C-tenellus_contig10387:879..10651680789129.1993577-CDS-C-tenellus_contig10387:879..1065Choristocarpus tenellus KU2346CDSC-tenellus_contig10387 880..1065 +
1680789129.211011-CDS-C-tenellus_contig10387:1288..13811680789129.211011-CDS-C-tenellus_contig10387:1288..1381Choristocarpus tenellus KU2346CDSC-tenellus_contig10387 1289..1381 +
1680789129.2186778-CDS-C-tenellus_contig10387:1841..19581680789129.2186778-CDS-C-tenellus_contig10387:1841..1958Choristocarpus tenellus KU2346CDSC-tenellus_contig10387 1842..1958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10387.1.3prot_C-tenellus_contig10387.1.3Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10387 880..1958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10387.1.3

>prot_C-tenellus_contig10387.1.3 ID=prot_C-tenellus_contig10387.1.3|Name=mRNA_C-tenellus_contig10387.1.3|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=132bp
MEGRENAYSNDDQGTKRPPTDSDIVVGAGVVGAAAGLIVSGPLLALGVGA
GVMGLAAAGNNKAGDVARSTGKVGVAAFKEGKKINERHHISEKVRAGLRS
TVNKAKELDHEHKIVDKTKKGADKAWKSVRKV
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mRNA from alignment at C-tenellus_contig10387:880..1958+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10387.1.3 ID=mRNA_C-tenellus_contig10387.1.3|Name=mRNA_C-tenellus_contig10387.1.3|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1079bp|location=Sequence derived from alignment at C-tenellus_contig10387:880..1958+ (Choristocarpus tenellus KU2346)
ATGGAGGGAAGAGAAAATGCTTATAGCAATGACGATCAGGGAACGAAAAG
GCCCCCAACCGACTCCGACATTGTGGTTGGTGCAGGAGTGGTTGGGGCAG
CTGCTGGACTCATCGTGAGCGGTCCCCTTCTTGCTCTGGGAGTCGGAGCA
GGGGTCATGGGACTAGCTGCCGCAGGAAATAACAAGGTATTAATATATTG
AACTGCCTCGTATAGATCCTTTGCATGGTAGAGCAGGTTCAATTTTCTCC
TCATCGCGACGGAACATCACCATGCTATGTATTGAAAGACCTGCTCATTC
TCTACTATGCGTATACAGTCCCTCGTCTTCCAAAGCGCTCCCCTCAAGCG
AATAAATAATACACTTATCGATAGGCCGCATTATGTATGTGCGATGCTGT
ATGACACAGGCCGGAGACGTTGCGCGATCCACTGGCAAGGTTGGCGTGGC
AGCTTTTAAGGAGGGAAAGAAAATCAACGAACGCCACCATATAAGCGAGA
AGGTGGGGTTGTCGGGGCGAAGACGTGTGGTTATCGTCTTCTTCCGATGT
TTTATTGATAACAGGATCCTACAACCTCGATGAAGCATCAGGGTAGATCA
CATACAATTGTACGATCATCACCCCCCTTTCACCTTTAGACATTCAACTC
AGATCAACAATCAATTGTCACCGAACCGAGCACATATGCATTTGAAATCA
AATGAGTTGGTTCTAAACACAAAGACCACCCGAATCACATTTGAAGGTCT
GATATTACTTGTCAACTTGCTTGCGCATATTTTAACAGGCAGGCAAGCAA
CGACACCTGGCTCACGCAACACACGAGAAATCACTTCCTGAGCTGATTTG
AACACGAACAAATGTTGTGGATTTCGTGGGAGGTTTGGTCATTGTTGTAC
TTTGTTCAATATTATGATAATTGAAATATGGTCCTGTCCCATCATAACCA
CTATATCGACAGGTGAGGGCTGGTTTGAGGTCAACTGTCAATAAAGCTAA
AGAGTTGGACCATGAGCACAAGATCGTGGATAAGACCAAGAAGGGGGCCG
ACAAAGCATGGAAGAGTGTTCGAAAGGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig10387:880..1958+

>mRNA_C-tenellus_contig10387.1.3 ID=mRNA_C-tenellus_contig10387.1.3|Name=mRNA_C-tenellus_contig10387.1.3|organism=Choristocarpus tenellus KU2346|type=CDS|length=396bp|location=Sequence derived from alignment at C-tenellus_contig10387:880..1958+ (Choristocarpus tenellus KU2346)
ATGGAGGGAAGAGAAAATGCTTATAGCAATGACGATCAGGGAACGAAAAG
GCCCCCAACCGACTCCGACATTGTGGTTGGTGCAGGAGTGGTTGGGGCAG
CTGCTGGACTCATCGTGAGCGGTCCCCTTCTTGCTCTGGGAGTCGGAGCA
GGGGTCATGGGACTAGCTGCCGCAGGAAATAACAAGGCCGGAGACGTTGC
GCGATCCACTGGCAAGGTTGGCGTGGCAGCTTTTAAGGAGGGAAAGAAAA
TCAACGAACGCCACCATATAAGCGAGAAGGTGAGGGCTGGTTTGAGGTCA
ACTGTCAATAAAGCTAAAGAGTTGGACCATGAGCACAAGATCGTGGATAA
GACCAAGAAGGGGGCCGACAAAGCATGGAAGAGTGTTCGAAAGGTG
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