mRNA_C-tenellus_contig9882.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9882.2.1
Unique NamemRNA_C-tenellus_contig9882.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9882.2.1 vs. uniprot
Match: D8LUC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUC5_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.120e-5
Identity = 36/116 (31.03%), Postives = 53/116 (45.69%), Query Frame = 2 
Query:  614 EDDTEFMMYVAIGLGIIIGIACLFCRVFYPLSE-VLKDFYKWLTHKEVVDAAPTPEQKEESKWNHWYLSEVLEIDEADRKELGPTGDVRRKKESRQTGGAIGSSLEGWQGAQNGGF 958
            EDD  +++   + +G +   AC +C+V+ PL    +K + +                       HWYL++ L+ID ADR ELGP G         +TG        GW GA+NGGF
Sbjct:   21 EDDGAYVLIAGLIMGGLTFTACCYCKVYDPLRNWSIKTYNRCCKKXXXXXXXXXXXXXXXXXRRHWYLNQTLQIDRADRDELGPQG--------ARTG-----LKGGWYGARNGGF 123
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9882.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUC5_ECTSI1.120e-531.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9882contigC-tenellus_contig9882:1705..5186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2608
Hectar predicted targeting categorysignal anchor
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_004460.1
Cds size498
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790205.785414-UTR-C-tenellus_contig9882:1704..33481680790205.785414-UTR-C-tenellus_contig9882:1704..3348Choristocarpus tenellus KU2346UTRC-tenellus_contig9882 1705..3348 -
1680790205.8174503-UTR-C-tenellus_contig9882:4720..51861680790205.8174503-UTR-C-tenellus_contig9882:4720..5186Choristocarpus tenellus KU2346UTRC-tenellus_contig9882 4721..5186 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790205.7971258-CDS-C-tenellus_contig9882:3348..35161680790205.7971258-CDS-C-tenellus_contig9882:3348..3516Choristocarpus tenellus KU2346CDSC-tenellus_contig9882 3349..3516 -
1680790205.8073683-CDS-C-tenellus_contig9882:4390..47201680790205.8073683-CDS-C-tenellus_contig9882:4390..4720Choristocarpus tenellus KU2346CDSC-tenellus_contig9882 4391..4720 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9882.2.1prot_C-tenellus_contig9882.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9882 3349..4720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9882.2.1

>prot_C-tenellus_contig9882.2.1 ID=prot_C-tenellus_contig9882.2.1|Name=mRNA_C-tenellus_contig9882.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=166bp
MYFTSRTLSKSSSQNFLTFSAWQVSGFRQCSPYLLSLRTKWKHSAAMFLE
DDTEFMMYVAIGLGIIIGIACLFCRVFYPLSEVLKDFYKWLTHKEVVDAA
PTPEQKEESKWNHWYLSEVLEIDEADRKELGPTGDVRRKKESRQTGGAIG
SSLEGWQGAQNGGFT*
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mRNA from alignment at C-tenellus_contig9882:1705..5186-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9882.2.1 ID=mRNA_C-tenellus_contig9882.2.1|Name=mRNA_C-tenellus_contig9882.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3482bp|location=Sequence derived from alignment at C-tenellus_contig9882:1705..5186- (Choristocarpus tenellus KU2346)
ACCCACGCTGTATGCGCCTTGTCATGTTGTGGTAAATTGACTTGACCAGG
TGGTTACGAATTGCGGCCCTTGTTTTGGCAAGGTGAGTGCTGTTTCGGCT
TTAGTTCGAAGTGCAACTGCTACAGTGTAGGTCTGCTGCACAACATTTCG
TGATACGTCATGTCTTCCGCCCAGTCCAGAGATAAGAAGGCGATTTTTAA
CAAATTGACGTGCTATTGCTTGTTGCCTGTGCTCGGATTTCTTCCAACTC
CTGTATTACAATGGCGCCTTCAATTCCTCATTCAATCACTCCCTTTTTTA
GAACACGAATATTTGATTGTTTGACTCAATTTCCGTCGCGTCATTTCTAC
CGAGCCATCGGTACTTCTCTAGCTAGTGACGTTATGTGGAGTCCAGTTGA
AGCTATTGCATTTGATCTCTGAAAATGGATCAGCCCTGTGATACTTCTCT
GGTCAAATCAGTGTAAATGTATTTCACCTCACGGACCTTGTCGAAAAGTT
CCAGTCAAAATTTCCTTACCTTCTCTGCGTGGCAGGTCTCTGGGTTTCGC
CAGTGCAGCCCCTACTTGTTGTCCTTGCGGACGAAGTGGAAACATAGTGC
TGCCATGTTCCTGGAAGATGATACTGAGTTTATGATGTATGTGGCAATCG
GCCTTGGCATAATCATCGGGATCGCTTGCCTGTTCTGCCGCGTGTTCTAC
CCCCTCAGCGAGGTTTTGAAGGATTTTTATAAATGGCTCACCCATAAGGA
GGTTGTTGATGCCGCTCCAACACCAGAGCAAAAAGAGGAATCCAAGGTGT
GAGACTTTTCATTTGACAACTATTTCTTGCAGAGGTGATGTTTCTTTCGT
CGTTAAGAGATGATATGTTTGATGATTTAACCTTCCGGAGGGGAGGGACT
GAGGATTCAGGCACCCTTGCAATATAGTATCAACATTTCCGTTGTCAAAT
ATGGAAATACCATTGTATTATCGAGGCAGAGAGTTGTGTGACTTTCTGTC
CTAGTGGTATAGTGGGATTTCAACATTTGACAAATCAGAGACCAGGGTAC
TATCCTTAAATGTGGACTATTACCCTAATTGGAACTGTACCATTGTCTTT
TTCGTAGCAGAGGTTGCACAACACCCATTTCTCACCTCTTGCTGAAACCT
TGTTTTTAGTACATCCCTTACCAGATCACATAGATTGTTTTGTATTTTGC
AGGGTCTGTCAACACTTAGAAAAGGTAACTGAACCATGAGGGAATTTGTC
AAAGTGCTGTAATTGCCATGGTCAGAAAGGTCTTCTTGTGCTCCTTGCTG
TGTAATTCTGTAGCATTGTGAATATTGAGAAGTTGAAGTTGAAGTTGAGT
TGAAGTCGAACAAATAGATGGTATGCCAAAGTCATACTGCTCCAGTTTAC
ACGTCCTTGATATTATAAGACGGATTATAGAAGATACATTTTGTCCCCCC
TCCCTGATCTCCTCCACGGTTCCTTCTGGCTAAGTACTGGCGACTAAGAA
ACTGAGTCATGCAGGAGGATGAGAAAACCCTCCAGCCCTTCCCTCATTTC
CTCTCTCCCTACTTAACCTGTCGCAAATATCAGGTGAGAATTAGATTAAT
GCACCAATTCCATCATTCTAGCTGTAATCCCCCTCCCCACATTCCCCCCT
CGAACCTTGACTGACTGCAGTGGAACCATTGGTACCTGAGTGAAGTGCTA
GAGATTGATGAGGCCGATAGGAAAGAGCTGGGACCCACAGGCGACGTTAG
AAGAAAGAAGGAAAGTCGGCAAACCGGGGGGGCAATTGGATCTTCCCTGG
AAGGATGGCAGGGTGCCCAGAATGGAGGATTTACGTAGTTTGTTGGCTGT
AATGATAACTGTAGTAGTGGACTTTGTGGTCTTATAATGCAACATATGTG
GAGGTGGGGGAGGGGCTTCACCGATGGAGAAGTGATGTGTAATGTTGTGG
TGGTGTGGTGTGAGGGTGATTGAAGTGTACTATTTTGAGCCCTTAACTGG
TACAGAGGTCGCGAGGAAATAGGAGGGTGGAGAGAAGATCTCTTGCTCAG
TCTCTTTTTTTTCTCTCTTTATCTTAGTTTTTTTGTAGTTTTTTTTTGTG
TTTGTCAACTCCCCGTGAAGCTTTTCCCACATTTCATCCGAGGTGCTTGC
CTTTGCCTGGGGGGAGTGGAGGGGAGATTCTTGTGGATGCCTCATTTTTT
GTTTGTGGTGAGTTCATTTTTTTTGTTTTATCTGTCCTGTTGTTTTGTGG
GGAAAGATCTCCTGGAAAAAACATTATTTCCTAGTTGTCTCCCCCTCAGG
GACAGGGATGTAAAGAGAGCTTGAGTTTTTGTTGGGCTGCACAGCTTCAG
AAACAACATGAAACTCACACTGACAAAAATGAGAGGGGTGGGTGGTGAAG
CTGCCCACAGGAAAAAGCTCGTGCACTCTTTCTTTTCTCCTGCTTGTGAA
CCAGGGGCATCTCTGGCCTTCCTTTGGGTTGAGTTTGGGGCAATGGGGCC
CTGCTGCCTGGCTGTTGGGTGCGAGTACCCATAATATGAGGGCAGTTTTC
TCTAAGGGATGCAGGAAGATGATACACGGCCTGTGTGCTTAACCCAGTCT
ATGTGTGTGTGACATGTCGGACCATCCCTGTGTGGGGTTGAACCTCTGTG
CTCTTGGGAGGAGGTACGCTTAAGGGAGAGGTTGGACTCCAACAATTTTT
AAACCCTGGATTCCGTGCTTATGTTGATGTTTGAACCTCAACCTTTTCCA
TGCAAGGGAGAAGATGTTAATATGTTTGGTGTAGGTGAACTTGATATGGT
TGCTGATCGCTGCTGAAGAATAAGTCGCAGGTCTCACAGGGCATTCATTC
TCCCAAATGATGTGTTGACAGTGACAAAATTTGCCATGTGCAAGGTGCTT
TACAGGAAGGATATTTGCGACCTGGCCCTGAATATTATTTTTTAGAGGTT
TCCCTGCTCACTGTCTGAGCTCAAGTCTGGGGTAGAGCAGTTGCTGGAAA
AGCAGGAAGGATAAATTTGCAAGCTTGAGCTAGACATTAGATTTTAGAGC
TATCCCTGCTCCCTGTCTGAGTTCAAGTATGGGGTAGAGCAAGTGCAGGA
AGATGAACCTTTTAGAAATCGATTACAGTGGAGGTTATCTTTTAATTGAG
TTGAGGGAGTACAAACATAAGAGCAATACATTTGTCACACTATCAGTTGT
TTTTGGCTGTTTGCATACAGTAGGCTATGATAGTGCAAGGATGTACGTAC
CTGTCCCTTTTGCTTCTTCATTGTGGTTCCGACTTTTTTAGAGTTGATGG
ATGCTCCTTTAGACCCTGAGCCTCTCCTTCTTGTGAAATTGTACCTTTAT
GCAAGCGGCACTGTCATGCTGAATCTGTTATACATTGCTGGTTTAACATC
TTTTCCTCCTAGTAATTGAGTTTTTACTCTGGTGCTTTCATCATTTCTGT
TTCTTCGATAATTCAATAAAACACAATGCAAT
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Coding sequence (CDS) from alignment at C-tenellus_contig9882:1705..5186-

>mRNA_C-tenellus_contig9882.2.1 ID=mRNA_C-tenellus_contig9882.2.1|Name=mRNA_C-tenellus_contig9882.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=498bp|location=Sequence derived from alignment at C-tenellus_contig9882:1705..5186- (Choristocarpus tenellus KU2346)
ATGTATTTCACCTCACGGACCTTGTCGAAAAGTTCCAGTCAAAATTTCCT
TACCTTCTCTGCGTGGCAGGTCTCTGGGTTTCGCCAGTGCAGCCCCTACT
TGTTGTCCTTGCGGACGAAGTGGAAACATAGTGCTGCCATGTTCCTGGAA
GATGATACTGAGTTTATGATGTATGTGGCAATCGGCCTTGGCATAATCAT
CGGGATCGCTTGCCTGTTCTGCCGCGTGTTCTACCCCCTCAGCGAGGTTT
TGAAGGATTTTTATAAATGGCTCACCCATAAGGAGGTTGTTGATGCCGCT
CCAACACCAGAGCAAAAAGAGGAATCCAAGTGGAACCATTGGTACCTGAG
TGAAGTGCTAGAGATTGATGAGGCCGATAGGAAAGAGCTGGGACCCACAG
GCGACGTTAGAAGAAAGAAGGAAAGTCGGCAAACCGGGGGGGCAATTGGA
TCTTCCCTGGAAGGATGGCAGGGTGCCCAGAATGGAGGATTTACGTAG
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