mRNA_C-tenellus_contig9790.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9790.1.1
Unique NamemRNA_C-tenellus_contig9790.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9790.1.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.530e-38
Identity = 91/241 (37.76%), Postives = 130/241 (53.94%), Query Frame = 1
Query:   10 LVMAIALSEDMKLRHADVRQAFVQADVKEYIYIEQPEDVTTAPGMVGKLKRS-----QASRNWHLKLAENLKGLGFKQCEPDSCLLRLVEHGVLEVLIATHVDHLLMASHSQEKGRAVAEALNKGFSVKDLGDVKLYMGCCLTRDHKMRTLKIDRQVYVEGLVERSKIIREYDMPESKTRNLSEKDSCAKLAPSTPYREAVRSLLWLVTMIRSDIPNTEISLTRFSGNPGQRHWEAVKQIL 717
            L+ A+A  +++ LRH D++QAFVQ+D+ E +++  PE      GM+ KL +S     QASR WH  LA  L  LGF QC  D+C+ RL+E G + V +  HVD +      +E+       LN    VK+LGD++ Y GC   RD    TLKI +Q Y E L     +    ++P      LSE D   ++  S P+RE + SL+WL T  R DI N   ++ R+  +P + HW A   IL
Sbjct:   23 LLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGE-EERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVV-SWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGIL 261          
BLAST of mRNA_C-tenellus_contig9790.1.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.420e-37
Identity = 91/241 (37.76%), Postives = 130/241 (53.94%), Query Frame = 1
Query:   10 LVMAIALSEDMKLRHADVRQAFVQADVKEYIYIEQPEDVTTAPGMVGKLKRS-----QASRNWHLKLAENLKGLGFKQCEPDSCLLRLVEHGVLEVLIATHVDHLLMASHSQEKGRAVAEALNKGFSVKDLGDVKLYMGCCLTRDHKMRTLKIDRQVYVEGLVERSKIIREYDMPESKTRNLSEKDSCAKLAPSTPYREAVRSLLWLVTMIRSDIPNTEISLTRFSGNPGQRHWEAVKQIL 717
            L+ A+A  +++ LRH D++QAFVQ+D+ E +++  PE      GM+ KL +S     QASR WH  LA  L  LGF QC  D+C+ RL+E G + V +  HVD +      +E+       LN    VK+LGD++ Y GC   RD    TLKI +Q Y E L     +    ++P      LSE D   ++  S P+RE + SL+WL T  R DI N   ++ R+  +P + HW A   IL
Sbjct:  197 LLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGE-EERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVV-SWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGIL 435          
BLAST of mRNA_C-tenellus_contig9790.1.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 4.430e-37
Identity = 91/241 (37.76%), Postives = 130/241 (53.94%), Query Frame = 1
Query:   10 LVMAIALSEDMKLRHADVRQAFVQADVKEYIYIEQPEDVTTAPGMVGKLKRS-----QASRNWHLKLAENLKGLGFKQCEPDSCLLRLVEHGVLEVLIATHVDHLLMASHSQEKGRAVAEALNKGFSVKDLGDVKLYMGCCLTRDHKMRTLKIDRQVYVEGLVERSKIIREYDMPESKTRNLSEKDSCAKLAPSTPYREAVRSLLWLVTMIRSDIPNTEISLTRFSGNPGQRHWEAVKQIL 717
            L+ A+A  +++ LRH D++QAFVQ+D+ E +++  PE      GM+ KL +S     QASR WH  LA  L  LGF QC  D+C+ RL+E G + V +  HVD +      +E+       LN    VK+LGD++ Y GC   RD    TLKI +Q Y E L     +    ++P      LSE D   ++  S P+RE + SL+WL T  R DI N   ++ R+  +P + HW A   IL
Sbjct:  718 LLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGE-EERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVV-SWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGIL 956          
BLAST of mRNA_C-tenellus_contig9790.1.1 vs. uniprot
Match: A0A6H5KKG5_9PHAE (Integrase catalytic domain-containing protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG5_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 3.810e-36
Identity = 90/241 (37.34%), Postives = 129/241 (53.53%), Query Frame = 1
Query:   10 LVMAIALSEDMKLRHADVRQAFVQADVKEYIYIEQPEDVTTAPGMVGKLKRS-----QASRNWHLKLAENLKGLGFKQCEPDSCLLRLVEHGVLEVLIATHVDHLLMASHSQEKGRAVAEALNKGFSVKDLGDVKLYMGCCLTRDHKMRTLKIDRQVYVEGLVERSKIIREYDMPESKTRNLSEKDSCAKLAPSTPYREAVRSLLWLVTMIRSDIPNTEISLTRFSGNPGQRHWEAVKQIL 717
            L+ A+A  +++ LRH D++QAFVQ+D+ E +++  PE      GM+ KL +S     QASR WH  LA  L  LGF QC  D+C+ RL+E G + V +  HVD +      +E+       LN    VK+LGD++ Y GC   RD    TLKI +Q Y E L     +    ++P      LSE D   ++  S P+R  + SL+WL T  R DI N   ++ R+  +P + HW A   IL
Sbjct:  748 LLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDFIFSIGE-EERCDQFGRDLNTMVPVKNLGDLRWYSGCLYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVV-SWPFRGLIGSLMWLATQTRPDIANAVRAVERYCASPKEIHWRAGLGIL 986          
BLAST of mRNA_C-tenellus_contig9790.1.1 vs. uniprot
Match: A0A6H5KSN7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSN7_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 2.280e-34
Identity = 87/241 (36.10%), Postives = 129/241 (53.53%), Query Frame = 1
Query:   10 LVMAIALSEDMKLRHADVRQAFVQADVKEYIYIEQPEDVTTAPGMVGKLKRS-----QASRNWHLKLAENLKGLGFKQCEPDSCLLRLVEHGVLEVLIATHVDHLLMASHSQEKGRAVAEALNKGFSVKDLGDVKLYMGCCLTRDHKMRTLKIDRQVYVEGLVERSKIIREYDMPESKTRNLSEKDSCAKLAPSTPYREAVRSLLWLVTMIRSDIPNTEISLTRFSGNPGQRHWEAVKQIL 717
            L+ A+A  + + +RH D++QAFVQ+++ E +++  PE      GM+ KL +S     Q SR WH  LA  L  LGF QC  D+C+ RL+E G +   +  HVD +L     +E+       LN    VK+ GD++ Y GC   RD    TLKI +Q Y E L  +  +    ++P      LSE D   ++  S P+RE + SL+WL T +R DI N   ++ R+  +P + HW A   IL
Sbjct: 1284 LLAAMACEQKLSVRHFDIKQAFVQSNLDEDVFMCLPEGCGRLSGMIVKLNKSLYGLKQVSRQWHSHLARCLICLGFIQCLADTCVFRLIEEGRVVATLVVHVDDILSIGE-EERCDQFGRDLNTMVPVKNRGDLRWYSGCLYERDWDAGTLKISQQTYAEELGMKFGVEYGKEIPLPVGLKLSEFDQDEEVV-SWPFRELIGSLMWLATQMRPDIANAVKAVARYCASPKEIHWRAGLGIL 1522          
BLAST of mRNA_C-tenellus_contig9790.1.1 vs. uniprot
Match: A0A6H5K9I1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I1_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 4.360e-33
Identity = 91/257 (35.41%), Postives = 130/257 (50.58%), Query Frame = 1
Query:   10 LVMAIALSEDMKLRHADVRQAFVQADVKEYIYIEQPEDVTTAPGMVGKLKRS-----QASRNWHLKLAENLKGLGFKQCEPDSCLLRLVEHGVLEVLIATHVDHLLMASHSQEKGRAVAEALNKGFSVKDLGDVK----------------LYMGCCLTRDHKMRTLKIDRQVYVEGLVERSKIIREYDMPESKTRNLSEKDSCAKLAPSTPYREAVRSLLWLVTMIRSDIPNTEISLTRFSGNPGQRHWEAVKQIL 717
            L+ A+A  +++ LRH D++QAFVQ+D+ E +++  PE      GM+ KL +S     QASR WH  LA  L  LGF QC  D+C+ RL+E G + V +  HVD +      +E+       LN    VK+LGD++                 Y GC   RD    TLKI +Q Y E L     +    ++P      LSE D   ++  S P+RE + SL+WL T  R DI N   ++ R+  +P + HW A   IL
Sbjct:  553 LLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGE-EERCDQFGRDLNTLVPVKNLGDLRWXXXXXXXXXXXXXXXXYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVV-SWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPIEIHWRAGIGIL 807          
BLAST of mRNA_C-tenellus_contig9790.1.1 vs. uniprot
Match: A0A6H5JHJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHJ3_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 6.030e-33
Identity = 76/233 (32.62%), Postives = 123/233 (52.79%), Query Frame = 1
Query:   19 AIALSEDMKLRHADVRQAFVQADVKEYIYIEQPEDVTTAPGMVGKLKRSQASRNWHLKLAENLKGLGFKQCEPDSCLLRLVEHGVLEVLIATHVDHLLMASHSQEKGRAVAEALNKGFSVKDLGDVKLYMGCCLTRDHKMRTLKIDRQVYVEGLVERSKIIREYDMPESKTRNLSEKDSCAKLAPSTPYREAVRSLLWLVTMIRSDIPNTEISLTRFSGNPGQRHWEAVKQIL 717
            A+A   ++ L H D+ Q FV+++++E + I  P+      GM+ KL + QA R WH  L   L  LGF+QC  D+C+ RL+E G + +++  HVD +      +   +  A+ LNK   VK+LG+++ Y GC   R+ +   L I +Q + + L     ++    +P S    LS+ D+  ++A   P+RE V S +WL    R DI N   ++ R+  +P   HW A   IL
Sbjct:  537 ALACELNLDLCHFDIAQIFVRSELEEDVCIRLPQGCGALSGMIAKLGKRQACRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGAD-LNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDA-DEVATDFPFRELVGSWIWLAIQTRPDIANAVRAVARYCASPKLVHWNAAMDIL 767          
BLAST of mRNA_C-tenellus_contig9790.1.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.140e-32
Identity = 79/244 (32.38%), Postives = 128/244 (52.46%), Query Frame = 1
Query:   10 LVMAIALSEDMKLRHADVRQAFVQADVKEYIYIEQPEDVTTAPGMVGKLKRS-----QASRNWHLKLAENLKGLGFKQCEPDSCLLRLVEHGVLEVLIATHVDHLLMA---SHSQEKGRAVAEALNKGFSVKDLGDVKLYMGCCLTRDHKMRTLKIDRQVYVEGLVERSKIIREYDMPESKTRNLSEKDSCAKLAPSTPYREAVRSLLWLVTMIRSDIPNTEISLTRFSGNPGQRHWEAVKQIL 717
            L+ A+A    + L H D  QAFVQ+++ E +Y+  P+      G + +L+RS     QASR WH  L   +K LGF+QC  D+C++RL+E GV+ +++  HVD +      S  ++ GR     LN+   + +LG+++LY G   +RD    T+ + +Q Y   +V +  + R  + P +    L E D+C       P+R  V  L+WL    R DI N   ++ R+S  P   HW+A   ++
Sbjct:  699 LLAALACELGLDLCHFDAEQAFVQSELVECVYLRLPQGCGALSGKIVRLRRSLYGLKQASRTWHKHLVRGMKCLGFEQCAADACVMRLIEEGVVAMVVVVHVDDIFSIGKKSRCEQFGRD----LNEYVPITNLGELRLYAGIRFSRDFAQGTITLSQQTYATNMVAKFGVTRNKETPMAVGVKLEEFDACEPDVEE-PFRSLVGHLMWLANQTRPDILNAVRAVARYSYAPKSVHWKAALHMV 937          
BLAST of mRNA_C-tenellus_contig9790.1.1 vs. uniprot
Match: A0A6H5JH88_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH88_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.300e-32
Identity = 81/212 (38.21%), Postives = 113/212 (53.30%), Query Frame = 1
Query:   25 ALSEDMKLRHADVRQAFVQADVKEYIYIEQPEDVTTAPGMVGKLKRS-----QASRNWHLKLAENLKGLGFKQCEPDSCLLRLVEHGVLEVLIATHVDHLLMASHSQEKGRAVAEALNKGFSVKDLGDVKLYMGCCLTRDHKMRTLKIDRQVYVEGLVERSKIIREYDMPESKTRNLSEKDSCAKLAPSTPYREAVRSLLWLVTMIRSDIPN 645
            A  +   LRH D++QAFVQ+D+ E++++  PE      GM+ KL +S     QASR WH  L   L  LGF QC  D+C+ RL+E G + V +A HVD +      +E+       LN    VK+LGD++ Y GC   RD    +LKI +Q Y E L     +    ++P      LSE D   ++  S P+RE + SL+WL T  R DI N
Sbjct:    2 ACEQYFSLRHFDIKQAFVQSDLDEFVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLVRCLICLGFIQCLADTCVFRLIEEGRVVVTLAVHVDDIFSIGE-EERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGSLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVV-SWPFRELIGSLMWLATQTRPDIAN 211          
BLAST of mRNA_C-tenellus_contig9790.1.1 vs. uniprot
Match: A0A6H5KDF0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDF0_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.470e-32
Identity = 86/241 (35.68%), Postives = 128/241 (53.11%), Query Frame = 1
Query:   10 LVMAIALSEDMKLRHADVRQAFVQADVKEYIYIEQPEDVTTAPGMVGKLKRS-----QASRNWHLKLAENLKGLGFKQCEPDSCLLRLVEHGVLEVLIATHVDHLLMASHSQEKGRAVAEALNKGFSVKDLGDVKLYMGCCLTRDHKMRTLKIDRQVYVEGLVERSKIIREYDMPESKTRNLSEKDSCAKLAPSTPYREAVRSLLWLVTMIRSDIPNTEISLTRFSGNPGQRHWEAVKQIL 717
            L+ A+A  +++ LRH D++QAFVQ+++ E I++  PE      GM+ KL +S     Q SR WH   A  L  LGF QC  D+ +LRL+  G + V +  HVD +   S  +E+        +    +K+LGD++ Y GC   RD   RTLKI +Q Y E L     +    ++P      LSE D   ++  S  +RE + SL+WL T  R DI N   ++ R+  +P + HW AV  I+
Sbjct:  528 LLAAMACEQNLSLRHFDIKQAFVQSELDEDIFMRLPEGCGRLSGMIVKLNKSLYGLKQVSRQWHSHSARCLICLGFIQCLADTIVLRLIAEGRVVVTLVVHVDDIF--SIGEERCDQFGRDRDTMIPLKNLGDLRWYSGCFYERDWDARTLKISQQTYAEELGMEFGVEYGKEIPLPAGLKLSEFDQDEEVV-SWSFRELIGSLMWLATQTRPDIANAVRAVARYFASPKEIHWRAVLGIV 765          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9790.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE1.530e-3837.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE1.420e-3737.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE4.430e-3737.76Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5KKG5_9PHAE3.810e-3637.34Integrase catalytic domain-containing protein n=6 ... [more]
A0A6H5KSN7_9PHAE2.280e-3436.10Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K9I1_9PHAE4.360e-3335.41Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JHJ3_9PHAE6.030e-3332.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCD8_9PHAE1.140e-3232.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JH88_9PHAE1.300e-3238.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KDF0_9PHAE1.470e-3235.68Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9790contigC-tenellus_contig9790:2951..3667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog5341.XP_007335052.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve
Model size717
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.84e-27
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,227R3@155619|Agaricomycetes
DescriptionEncoded by
Cds size702
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790201.5145967-CDS-C-tenellus_contig9790:2950..36521680790201.5145967-CDS-C-tenellus_contig9790:2950..3652Choristocarpus tenellus KU2346CDSC-tenellus_contig9790 2951..3652 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790201.5283153-UTR-C-tenellus_contig9790:3652..36671680790201.5283153-UTR-C-tenellus_contig9790:3652..3667Choristocarpus tenellus KU2346UTRC-tenellus_contig9790 3653..3667 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9790.1.1prot_C-tenellus_contig9790.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9790 2951..3652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9790.1.1

>prot_C-tenellus_contig9790.1.1 ID=prot_C-tenellus_contig9790.1.1|Name=mRNA_C-tenellus_contig9790.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=234bp
MAIALSEDMKLRHADVRQAFVQADVKEYIYIEQPEDVTTAPGMVGKLKRS
QASRNWHLKLAENLKGLGFKQCEPDSCLLRLVEHGVLEVLIATHVDHLLM
ASHSQEKGRAVAEALNKGFSVKDLGDVKLYMGCCLTRDHKMRTLKIDRQV
YVEGLVERSKIIREYDMPESKTRNLSEKDSCAKLAPSTPYREAVRSLLWL
VTMIRSDIPNTEISLTRFSGNPGQRHWEAVKQIL
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mRNA from alignment at C-tenellus_contig9790:2951..3667-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9790.1.1 ID=mRNA_C-tenellus_contig9790.1.1|Name=mRNA_C-tenellus_contig9790.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=717bp|location=Sequence derived from alignment at C-tenellus_contig9790:2951..3667- (Choristocarpus tenellus KU2346)
ACTTTAATTTTGGTGATGGCAATCGCTTTATCTGAGGACATGAAACTACG ACATGCTGATGTACGACAGGCTTTTGTTCAAGCAGATGTCAAGGAGTACA TTTACATCGAACAACCTGAGGATGTGACAACAGCTCCAGGAATGGTAGGA AAGCTCAAGAGATCACAAGCATCGCGCAACTGGCATCTCAAACTAGCTGA AAACCTCAAGGGACTAGGTTTCAAGCAATGCGAGCCTGACTCCTGTTTAC TCCGTCTAGTGGAACACGGGGTGTTGGAAGTACTGATAGCCACACATGTG GATCATCTGTTGATGGCTAGTCACTCGCAGGAGAAGGGCAGGGCAGTGGC GGAAGCTCTGAACAAGGGATTCTCTGTCAAGGATTTGGGGGATGTAAAGT TATATATGGGATGCTGCCTTACACGGGATCATAAAATGAGGACACTGAAG ATTGATCGGCAAGTCTATGTGGAAGGGTTGGTGGAACGGTCCAAGATCAT CAGAGAATATGATATGCCTGAATCTAAAACCAGGAATCTGTCTGAGAAGG ATTCGTGTGCGAAACTGGCCCCATCTACTCCATACCGGGAAGCAGTGAGG TCATTACTCTGGTTAGTGACCATGATCAGGTCTGATATTCCCAACACAGA AATTAGTTTGACCAGATTTAGTGGTAACCCAGGACAGAGGCATTGGGAAG CTGTTAAGCAGATTTTG
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Coding sequence (CDS) from alignment at C-tenellus_contig9790:2951..3667-

>mRNA_C-tenellus_contig9790.1.1 ID=mRNA_C-tenellus_contig9790.1.1|Name=mRNA_C-tenellus_contig9790.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=702bp|location=Sequence derived from alignment at C-tenellus_contig9790:2951..3667- (Choristocarpus tenellus KU2346)
ATGGCAATCGCTTTATCTGAGGACATGAAACTACGACATGCTGATGTACG
ACAGGCTTTTGTTCAAGCAGATGTCAAGGAGTACATTTACATCGAACAAC
CTGAGGATGTGACAACAGCTCCAGGAATGGTAGGAAAGCTCAAGAGATCA
CAAGCATCGCGCAACTGGCATCTCAAACTAGCTGAAAACCTCAAGGGACT
AGGTTTCAAGCAATGCGAGCCTGACTCCTGTTTACTCCGTCTAGTGGAAC
ACGGGGTGTTGGAAGTACTGATAGCCACACATGTGGATCATCTGTTGATG
GCTAGTCACTCGCAGGAGAAGGGCAGGGCAGTGGCGGAAGCTCTGAACAA
GGGATTCTCTGTCAAGGATTTGGGGGATGTAAAGTTATATATGGGATGCT
GCCTTACACGGGATCATAAAATGAGGACACTGAAGATTGATCGGCAAGTC
TATGTGGAAGGGTTGGTGGAACGGTCCAAGATCATCAGAGAATATGATAT
GCCTGAATCTAAAACCAGGAATCTGTCTGAGAAGGATTCGTGTGCGAAAC
TGGCCCCATCTACTCCATACCGGGAAGCAGTGAGGTCATTACTCTGGTTA
GTGACCATGATCAGGTCTGATATTCCCAACACAGAAATTAGTTTGACCAG
ATTTAGTGGTAACCCAGGACAGAGGCATTGGGAAGCTGTTAAGCAGATTT
TG
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