mRNA_C-tenellus_contig9790.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig9790.1.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 148 bits (373), Expect = 1.530e-38 Identity = 91/241 (37.76%), Postives = 130/241 (53.94%), Query Frame = 1 Query: 10 LVMAIALSEDMKLRHADVRQAFVQADVKEYIYIEQPEDVTTAPGMVGKLKRS-----QASRNWHLKLAENLKGLGFKQCEPDSCLLRLVEHGVLEVLIATHVDHLLMASHSQEKGRAVAEALNKGFSVKDLGDVKLYMGCCLTRDHKMRTLKIDRQVYVEGLVERSKIIREYDMPESKTRNLSEKDSCAKLAPSTPYREAVRSLLWLVTMIRSDIPNTEISLTRFSGNPGQRHWEAVKQIL 717 L+ A+A +++ LRH D++QAFVQ+D+ E +++ PE GM+ KL +S QASR WH LA L LGF QC D+C+ RL+E G + V + HVD + +E+ LN VK+LGD++ Y GC RD TLKI +Q Y E L + ++P LSE D ++ S P+RE + SL+WL T R DI N ++ R+ +P + HW A IL Sbjct: 23 LLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGE-EERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVV-SWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGIL 261
BLAST of mRNA_C-tenellus_contig9790.1.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 148 bits (373), Expect = 1.420e-37 Identity = 91/241 (37.76%), Postives = 130/241 (53.94%), Query Frame = 1 Query: 10 LVMAIALSEDMKLRHADVRQAFVQADVKEYIYIEQPEDVTTAPGMVGKLKRS-----QASRNWHLKLAENLKGLGFKQCEPDSCLLRLVEHGVLEVLIATHVDHLLMASHSQEKGRAVAEALNKGFSVKDLGDVKLYMGCCLTRDHKMRTLKIDRQVYVEGLVERSKIIREYDMPESKTRNLSEKDSCAKLAPSTPYREAVRSLLWLVTMIRSDIPNTEISLTRFSGNPGQRHWEAVKQIL 717 L+ A+A +++ LRH D++QAFVQ+D+ E +++ PE GM+ KL +S QASR WH LA L LGF QC D+C+ RL+E G + V + HVD + +E+ LN VK+LGD++ Y GC RD TLKI +Q Y E L + ++P LSE D ++ S P+RE + SL+WL T R DI N ++ R+ +P + HW A IL Sbjct: 197 LLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGE-EERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVV-SWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGIL 435
BLAST of mRNA_C-tenellus_contig9790.1.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE) HSP 1 Score: 148 bits (373), Expect = 4.430e-37 Identity = 91/241 (37.76%), Postives = 130/241 (53.94%), Query Frame = 1 Query: 10 LVMAIALSEDMKLRHADVRQAFVQADVKEYIYIEQPEDVTTAPGMVGKLKRS-----QASRNWHLKLAENLKGLGFKQCEPDSCLLRLVEHGVLEVLIATHVDHLLMASHSQEKGRAVAEALNKGFSVKDLGDVKLYMGCCLTRDHKMRTLKIDRQVYVEGLVERSKIIREYDMPESKTRNLSEKDSCAKLAPSTPYREAVRSLLWLVTMIRSDIPNTEISLTRFSGNPGQRHWEAVKQIL 717 L+ A+A +++ LRH D++QAFVQ+D+ E +++ PE GM+ KL +S QASR WH LA L LGF QC D+C+ RL+E G + V + HVD + +E+ LN VK+LGD++ Y GC RD TLKI +Q Y E L + ++P LSE D ++ S P+RE + SL+WL T R DI N ++ R+ +P + HW A IL Sbjct: 718 LLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGE-EERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVV-SWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGIL 956
BLAST of mRNA_C-tenellus_contig9790.1.1 vs. uniprot
Match: A0A6H5KKG5_9PHAE (Integrase catalytic domain-containing protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG5_9PHAE) HSP 1 Score: 145 bits (366), Expect = 3.810e-36 Identity = 90/241 (37.34%), Postives = 129/241 (53.53%), Query Frame = 1 Query: 10 LVMAIALSEDMKLRHADVRQAFVQADVKEYIYIEQPEDVTTAPGMVGKLKRS-----QASRNWHLKLAENLKGLGFKQCEPDSCLLRLVEHGVLEVLIATHVDHLLMASHSQEKGRAVAEALNKGFSVKDLGDVKLYMGCCLTRDHKMRTLKIDRQVYVEGLVERSKIIREYDMPESKTRNLSEKDSCAKLAPSTPYREAVRSLLWLVTMIRSDIPNTEISLTRFSGNPGQRHWEAVKQIL 717 L+ A+A +++ LRH D++QAFVQ+D+ E +++ PE GM+ KL +S QASR WH LA L LGF QC D+C+ RL+E G + V + HVD + +E+ LN VK+LGD++ Y GC RD TLKI +Q Y E L + ++P LSE D ++ S P+R + SL+WL T R DI N ++ R+ +P + HW A IL Sbjct: 748 LLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDFIFSIGE-EERCDQFGRDLNTMVPVKNLGDLRWYSGCLYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVV-SWPFRGLIGSLMWLATQTRPDIANAVRAVERYCASPKEIHWRAGLGIL 986
BLAST of mRNA_C-tenellus_contig9790.1.1 vs. uniprot
Match: A0A6H5KSN7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSN7_9PHAE) HSP 1 Score: 140 bits (353), Expect = 2.280e-34 Identity = 87/241 (36.10%), Postives = 129/241 (53.53%), Query Frame = 1 Query: 10 LVMAIALSEDMKLRHADVRQAFVQADVKEYIYIEQPEDVTTAPGMVGKLKRS-----QASRNWHLKLAENLKGLGFKQCEPDSCLLRLVEHGVLEVLIATHVDHLLMASHSQEKGRAVAEALNKGFSVKDLGDVKLYMGCCLTRDHKMRTLKIDRQVYVEGLVERSKIIREYDMPESKTRNLSEKDSCAKLAPSTPYREAVRSLLWLVTMIRSDIPNTEISLTRFSGNPGQRHWEAVKQIL 717 L+ A+A + + +RH D++QAFVQ+++ E +++ PE GM+ KL +S Q SR WH LA L LGF QC D+C+ RL+E G + + HVD +L +E+ LN VK+ GD++ Y GC RD TLKI +Q Y E L + + ++P LSE D ++ S P+RE + SL+WL T +R DI N ++ R+ +P + HW A IL Sbjct: 1284 LLAAMACEQKLSVRHFDIKQAFVQSNLDEDVFMCLPEGCGRLSGMIVKLNKSLYGLKQVSRQWHSHLARCLICLGFIQCLADTCVFRLIEEGRVVATLVVHVDDILSIGE-EERCDQFGRDLNTMVPVKNRGDLRWYSGCLYERDWDAGTLKISQQTYAEELGMKFGVEYGKEIPLPVGLKLSEFDQDEEVV-SWPFRELIGSLMWLATQMRPDIANAVKAVARYCASPKEIHWRAGLGIL 1522
BLAST of mRNA_C-tenellus_contig9790.1.1 vs. uniprot
Match: A0A6H5K9I1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I1_9PHAE) HSP 1 Score: 136 bits (343), Expect = 4.360e-33 Identity = 91/257 (35.41%), Postives = 130/257 (50.58%), Query Frame = 1 Query: 10 LVMAIALSEDMKLRHADVRQAFVQADVKEYIYIEQPEDVTTAPGMVGKLKRS-----QASRNWHLKLAENLKGLGFKQCEPDSCLLRLVEHGVLEVLIATHVDHLLMASHSQEKGRAVAEALNKGFSVKDLGDVK----------------LYMGCCLTRDHKMRTLKIDRQVYVEGLVERSKIIREYDMPESKTRNLSEKDSCAKLAPSTPYREAVRSLLWLVTMIRSDIPNTEISLTRFSGNPGQRHWEAVKQIL 717 L+ A+A +++ LRH D++QAFVQ+D+ E +++ PE GM+ KL +S QASR WH LA L LGF QC D+C+ RL+E G + V + HVD + +E+ LN VK+LGD++ Y GC RD TLKI +Q Y E L + ++P LSE D ++ S P+RE + SL+WL T R DI N ++ R+ +P + HW A IL Sbjct: 553 LLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGE-EERCDQFGRDLNTLVPVKNLGDLRWXXXXXXXXXXXXXXXXYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVV-SWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPIEIHWRAGIGIL 807
BLAST of mRNA_C-tenellus_contig9790.1.1 vs. uniprot
Match: A0A6H5JHJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHJ3_9PHAE) HSP 1 Score: 136 bits (342), Expect = 6.030e-33 Identity = 76/233 (32.62%), Postives = 123/233 (52.79%), Query Frame = 1 Query: 19 AIALSEDMKLRHADVRQAFVQADVKEYIYIEQPEDVTTAPGMVGKLKRSQASRNWHLKLAENLKGLGFKQCEPDSCLLRLVEHGVLEVLIATHVDHLLMASHSQEKGRAVAEALNKGFSVKDLGDVKLYMGCCLTRDHKMRTLKIDRQVYVEGLVERSKIIREYDMPESKTRNLSEKDSCAKLAPSTPYREAVRSLLWLVTMIRSDIPNTEISLTRFSGNPGQRHWEAVKQIL 717 A+A ++ L H D+ Q FV+++++E + I P+ GM+ KL + QA R WH L L LGF+QC D+C+ RL+E G + +++ HVD + + + A+ LNK VK+LG+++ Y GC R+ + L I +Q + + L ++ +P S LS+ D+ ++A P+RE V S +WL R DI N ++ R+ +P HW A IL Sbjct: 537 ALACELNLDLCHFDIAQIFVRSELEEDVCIRLPQGCGALSGMIAKLGKRQACRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGAD-LNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDA-DEVATDFPFRELVGSWIWLAIQTRPDIANAVRAVARYCASPKLVHWNAAMDIL 767
BLAST of mRNA_C-tenellus_contig9790.1.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE) HSP 1 Score: 135 bits (340), Expect = 1.140e-32 Identity = 79/244 (32.38%), Postives = 128/244 (52.46%), Query Frame = 1 Query: 10 LVMAIALSEDMKLRHADVRQAFVQADVKEYIYIEQPEDVTTAPGMVGKLKRS-----QASRNWHLKLAENLKGLGFKQCEPDSCLLRLVEHGVLEVLIATHVDHLLMA---SHSQEKGRAVAEALNKGFSVKDLGDVKLYMGCCLTRDHKMRTLKIDRQVYVEGLVERSKIIREYDMPESKTRNLSEKDSCAKLAPSTPYREAVRSLLWLVTMIRSDIPNTEISLTRFSGNPGQRHWEAVKQIL 717 L+ A+A + L H D QAFVQ+++ E +Y+ P+ G + +L+RS QASR WH L +K LGF+QC D+C++RL+E GV+ +++ HVD + S ++ GR LN+ + +LG+++LY G +RD T+ + +Q Y +V + + R + P + L E D+C P+R V L+WL R DI N ++ R+S P HW+A ++ Sbjct: 699 LLAALACELGLDLCHFDAEQAFVQSELVECVYLRLPQGCGALSGKIVRLRRSLYGLKQASRTWHKHLVRGMKCLGFEQCAADACVMRLIEEGVVAMVVVVHVDDIFSIGKKSRCEQFGRD----LNEYVPITNLGELRLYAGIRFSRDFAQGTITLSQQTYATNMVAKFGVTRNKETPMAVGVKLEEFDACEPDVEE-PFRSLVGHLMWLANQTRPDILNAVRAVARYSYAPKSVHWKAALHMV 937
BLAST of mRNA_C-tenellus_contig9790.1.1 vs. uniprot
Match: A0A6H5JH88_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH88_9PHAE) HSP 1 Score: 130 bits (326), Expect = 1.300e-32 Identity = 81/212 (38.21%), Postives = 113/212 (53.30%), Query Frame = 1 Query: 25 ALSEDMKLRHADVRQAFVQADVKEYIYIEQPEDVTTAPGMVGKLKRS-----QASRNWHLKLAENLKGLGFKQCEPDSCLLRLVEHGVLEVLIATHVDHLLMASHSQEKGRAVAEALNKGFSVKDLGDVKLYMGCCLTRDHKMRTLKIDRQVYVEGLVERSKIIREYDMPESKTRNLSEKDSCAKLAPSTPYREAVRSLLWLVTMIRSDIPN 645 A + LRH D++QAFVQ+D+ E++++ PE GM+ KL +S QASR WH L L LGF QC D+C+ RL+E G + V +A HVD + +E+ LN VK+LGD++ Y GC RD +LKI +Q Y E L + ++P LSE D ++ S P+RE + SL+WL T R DI N Sbjct: 2 ACEQYFSLRHFDIKQAFVQSDLDEFVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLVRCLICLGFIQCLADTCVFRLIEEGRVVVTLAVHVDDIFSIGE-EERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGSLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVV-SWPFRELIGSLMWLATQTRPDIAN 211
BLAST of mRNA_C-tenellus_contig9790.1.1 vs. uniprot
Match: A0A6H5KDF0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDF0_9PHAE) HSP 1 Score: 135 bits (339), Expect = 1.470e-32 Identity = 86/241 (35.68%), Postives = 128/241 (53.11%), Query Frame = 1 Query: 10 LVMAIALSEDMKLRHADVRQAFVQADVKEYIYIEQPEDVTTAPGMVGKLKRS-----QASRNWHLKLAENLKGLGFKQCEPDSCLLRLVEHGVLEVLIATHVDHLLMASHSQEKGRAVAEALNKGFSVKDLGDVKLYMGCCLTRDHKMRTLKIDRQVYVEGLVERSKIIREYDMPESKTRNLSEKDSCAKLAPSTPYREAVRSLLWLVTMIRSDIPNTEISLTRFSGNPGQRHWEAVKQIL 717 L+ A+A +++ LRH D++QAFVQ+++ E I++ PE GM+ KL +S Q SR WH A L LGF QC D+ +LRL+ G + V + HVD + S +E+ + +K+LGD++ Y GC RD RTLKI +Q Y E L + ++P LSE D ++ S +RE + SL+WL T R DI N ++ R+ +P + HW AV I+ Sbjct: 528 LLAAMACEQNLSLRHFDIKQAFVQSELDEDIFMRLPEGCGRLSGMIVKLNKSLYGLKQVSRQWHSHSARCLICLGFIQCLADTIVLRLIAEGRVVVTLVVHVDDIF--SIGEERCDQFGRDRDTMIPLKNLGDLRWYSGCFYERDWDARTLKISQQTYAEELGMEFGVEYGKEIPLPAGLKLSEFDQDEEVV-SWSFRELIGSLMWLATQTRPDIANAVRAVARYFASPKEIHWRAVLGIV 765 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9790.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig9790.1.1 >prot_C-tenellus_contig9790.1.1 ID=prot_C-tenellus_contig9790.1.1|Name=mRNA_C-tenellus_contig9790.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=234bp MAIALSEDMKLRHADVRQAFVQADVKEYIYIEQPEDVTTAPGMVGKLKRSback to top mRNA from alignment at C-tenellus_contig9790:2951..3667- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig9790.1.1 ID=mRNA_C-tenellus_contig9790.1.1|Name=mRNA_C-tenellus_contig9790.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=717bp|location=Sequence derived from alignment at C-tenellus_contig9790:2951..3667- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig9790:2951..3667- >mRNA_C-tenellus_contig9790.1.1 ID=mRNA_C-tenellus_contig9790.1.1|Name=mRNA_C-tenellus_contig9790.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=702bp|location=Sequence derived from alignment at C-tenellus_contig9790:2951..3667- (Choristocarpus tenellus KU2346)back to top |