prot_C-tenellus_contig9788.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig9788.1.1
Unique Nameprot_C-tenellus_contig9788.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length93
Homology
BLAST of mRNA_C-tenellus_contig9788.1.1 vs. uniprot
Match: D8LH29_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH29_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 6.470e-21
Identity = 52/93 (55.91%), Postives = 66/93 (70.97%), Query Frame = 0
Query:    1 MTRPSWPRRRYQLWVKKGTAPLGVRLHQTKNKKGVYINCFTLATSTTDALSTPHQETMRVGDLLVSVDGKDMENSSLPTALLALETARRRVRL 93
            M+ P+WP RRY++ VKKG APLG++LHQTK+++GVY N F              Q  MRVGD+LVSVDGK +E ++LP AL A+ETARRR RL
Sbjct:    7 MSGPNWPVRRYEIIVKKGGAPLGLKLHQTKSRRGVYANGFAEGPYPPPG----PQACMRVGDVLVSVDGKSVEGATLPVALAAIETARRRDRL 95          
BLAST of mRNA_C-tenellus_contig9788.1.1 vs. uniprot
Match: A0A6H5JHW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHW4_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 3.030e-20
Identity = 52/93 (55.91%), Postives = 65/93 (69.89%), Query Frame = 0
Query:    1 MTRPSWPRRRYQLWVKKGTAPLGVRLHQTKNKKGVYINCFTLATSTTDALSTPHQETMRVGDLLVSVDGKDMENSSLPTALLALETARRRVRL 93
            M+ P+WP RRY++ VKKG APLG++LHQTK+ +GVY N F              Q  MRVGD+LVSVDGK +E ++LP AL A+ETARRR RL
Sbjct:    7 MSGPNWPVRRYEIIVKKGGAPLGLKLHQTKSTRGVYANGFAEGPYPPPG----PQACMRVGDVLVSVDGKSVEGATLPVALAAIETARRRDRL 95          
BLAST of mRNA_C-tenellus_contig9788.1.1 vs. uniprot
Match: A0A835ZHK7_9STRA (Coronin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHK7_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 6.540e-11
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 0
Query:    7 PRR-RYQLWVKKGTAPLGVRLHQTKNKKGVYINCFTLATS--TTDALSTPHQE------TMRVGDLLVSVDGKDMENSSLPTALLALETARRRVRL 93
            PRR RY L +KKGT PLG++L +T+ ++GVY+N FT  +S  T   L++P         ++ VGDL+VS++G+++    LP  L  +E ARRR RL
Sbjct:   38 PRRERYSLLLKKGTTPLGLKLLETRCRRGVYVNGFTPTSSPGTNTGLNSPPASAAPPILSIAVGDLIVSIEGQNVSQLPLPGVLALIEQARRRDRL 133          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9788.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LH29_ECTSI6.470e-2155.91PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JHW4_9PHAE3.030e-2055.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZHK7_9STRA6.540e-1143.75Coronin n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036034PDZ superfamilyGENE3D2.30.42.10coord: 5..93
e-value: 7.1E-8
score: 34.3
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 5..93
IPR001478PDZ domainPROSITEPS50106PDZcoord: 16..93
score: 10.536

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9788contigC-tenellus_contig9788:900..1724 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9788.1.1mRNA_C-tenellus_contig9788.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig9788 900..1724 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig9788.1.1 ID=prot_C-tenellus_contig9788.1.1|Name=mRNA_C-tenellus_contig9788.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=93bp
MTRPSWPRRRYQLWVKKGTAPLGVRLHQTKNKKGVYINCFTLATSTTDAL
STPHQETMRVGDLLVSVDGKDMENSSLPTALLALETARRRVRL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036034PDZ_sf
IPR001478PDZ