mRNA_C-tenellus_contig9788.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9788.1.1
Unique NamemRNA_C-tenellus_contig9788.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig9788.1.1 vs. uniprot
Match: D8LH29_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH29_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 6.470e-21
Identity = 52/93 (55.91%), Postives = 66/93 (70.97%), Query Frame = 1 
Query:    1 MTRPSWPRRRYQLWVKKGTAPLGVRLHQTKNKKGVYINCFTLATSTTDALSTPHQETMRVGDLLVSVDGKDMENSSLPTALLALETARRRVRL 279
            M+ P+WP RRY++ VKKG APLG++LHQTK+++GVY N F              Q  MRVGD+LVSVDGK +E ++LP AL A+ETARRR RL
Sbjct:    7 MSGPNWPVRRYEIIVKKGGAPLGLKLHQTKSRRGVYANGFAEGPYPPPG----PQACMRVGDVLVSVDGKSVEGATLPVALAAIETARRRDRL 95
[Close]
BLAST of mRNA_C-tenellus_contig9788.1.1 vs. uniprot
Match: A0A6H5JHW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHW4_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 3.030e-20
Identity = 52/93 (55.91%), Postives = 65/93 (69.89%), Query Frame = 1 
Query:    1 MTRPSWPRRRYQLWVKKGTAPLGVRLHQTKNKKGVYINCFTLATSTTDALSTPHQETMRVGDLLVSVDGKDMENSSLPTALLALETARRRVRL 279
            M+ P+WP RRY++ VKKG APLG++LHQTK+ +GVY N F              Q  MRVGD+LVSVDGK +E ++LP AL A+ETARRR RL
Sbjct:    7 MSGPNWPVRRYEIIVKKGGAPLGLKLHQTKSTRGVYANGFAEGPYPPPG----PQACMRVGDVLVSVDGKSVEGATLPVALAAIETARRRDRL 95
[Close]
BLAST of mRNA_C-tenellus_contig9788.1.1 vs. uniprot
Match: A0A835ZHK7_9STRA (Coronin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHK7_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 6.540e-11
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:   19 PRR-RYQLWVKKGTAPLGVRLHQTKNKKGVYINCFTLATS--TTDALSTPHQE------TMRVGDLLVSVDGKDMENSSLPTALLALETARRRVRL 279
            PRR RY L +KKGT PLG++L +T+ ++GVY+N FT  +S  T   L++P         ++ VGDL+VS++G+++    LP  L  +E ARRR RL
Sbjct:   38 PRRERYSLLLKKGTTPLGLKLLETRCRRGVYVNGFTPTSSPGTNTGLNSPPASAAPPILSIAVGDLIVSIEGQNVSQLPLPGVLALIEQARRRDRL 133
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9788.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LH29_ECTSI6.470e-2155.91PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JHW4_9PHAE3.030e-2055.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZHK7_9STRA6.540e-1143.75Coronin n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9788contigC-tenellus_contig9788:900..1724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size279
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790201.3188887-CDS-C-tenellus_contig9788:899..10781680790201.3188887-CDS-C-tenellus_contig9788:899..1078Choristocarpus tenellus KU2346CDSC-tenellus_contig9788 900..1078 -
1680790201.3316162-CDS-C-tenellus_contig9788:1624..17241680790201.3316162-CDS-C-tenellus_contig9788:1624..1724Choristocarpus tenellus KU2346CDSC-tenellus_contig9788 1625..1724 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9788.1.1prot_C-tenellus_contig9788.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9788 900..1724 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9788.1.1

>prot_C-tenellus_contig9788.1.1 ID=prot_C-tenellus_contig9788.1.1|Name=mRNA_C-tenellus_contig9788.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=93bp
MTRPSWPRRRYQLWVKKGTAPLGVRLHQTKNKKGVYINCFTLATSTTDAL
STPHQETMRVGDLLVSVDGKDMENSSLPTALLALETARRRVRL
back to top

mRNA from alignment at C-tenellus_contig9788:900..1724-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9788.1.1 ID=mRNA_C-tenellus_contig9788.1.1|Name=mRNA_C-tenellus_contig9788.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=825bp|location=Sequence derived from alignment at C-tenellus_contig9788:900..1724- (Choristocarpus tenellus KU2346)
ATGACTAGACCCAGCTGGCCTCGTCGCCGATATCAACTATGGGTTAAGAA
AGGAACCGCCCCTTTGGGTGTAAGACTTCATCAGACAAAGAACAAGAAAG
GTGTGCACCTGAAAGTAGGATGTGGCATTGGTAGTGAGGAAAATCAGGTA
CTCTATACTTCAGACCATACTGTGGAGTGCAGTCTTGGTGTAATAGACGG
CAAGGAGGCTGTTGTCGCAAGTAGCCTTGCTTCGTTGTGTGACTTCCTCC
AATCGACTCATAGTATGCTGAAGTTCGTTTTACAAACACTCAGAATGTGG
GCATGCAAGCGAATTTTGTGGCAAAGGTGTTGGACTTCTCAAGTGGGCTC
CTGGTTTTGTATATGCCGACCAGAGGTGAAAGACTAAATCACAGTACTTG
ACTTTGGAAGCCACTCAATGGAGACACACGACACTTACGAATGCTCTCAG
TCGCGTTAGGGGTGTAAGGATGCAAGGGACACCTCCCCCTAGTCGAGATC
CTCGAGCAGCTGCGGTAGAGGACATATATTACTTTTGCATCGGCAATACC
CGAAGAGAGGGGCAAACCACAGACTACCCATTGGTATGGATGTGTTGGAA
TCCACGACCACAACCCCTAACTATATTAACCCATCCATTGCTACAGGAGT
TTACATCAATTGCTTCACCTTGGCCACCTCGACAACGGACGCATTGTCTA
CCCCTCACCAGGAGACAATGCGCGTCGGTGATCTCCTAGTGTCGGTGGAT
GGGAAAGATATGGAAAACTCGTCCCTTCCCACAGCGCTACTGGCTCTGGA
GACAGCAAGACGGCGGGTGAGGCTC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9788:900..1724-

>mRNA_C-tenellus_contig9788.1.1 ID=mRNA_C-tenellus_contig9788.1.1|Name=mRNA_C-tenellus_contig9788.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=279bp|location=Sequence derived from alignment at C-tenellus_contig9788:900..1724- (Choristocarpus tenellus KU2346)
ATGACTAGACCCAGCTGGCCTCGTCGCCGATATCAACTATGGGTTAAGAA
AGGAACCGCCCCTTTGGGTGTAAGACTTCATCAGACAAAGAACAAGAAAG
GAGTTTACATCAATTGCTTCACCTTGGCCACCTCGACAACGGACGCATTG
TCTACCCCTCACCAGGAGACAATGCGCGTCGGTGATCTCCTAGTGTCGGT
GGATGGGAAAGATATGGAAAACTCGTCCCTTCCCACAGCGCTACTGGCTC
TGGAGACAGCAAGACGGCGGGTGAGGCTC
back to top