mRNA_C-tenellus_contig102.2.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig102.2.2
Unique NamemRNA_C-tenellus_contig102.2.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig102.2.2 vs. uniprot
Match: A0A6H5JA52_9PHAE (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JA52_9PHAE)

HSP 1 Score: 369 bits (946), Expect = 8.420e-128
Identity = 184/228 (80.70%), Postives = 202/228 (88.60%), Query Frame = 1
Query:    1 MIRLKKKQDEEKTAQTA--MDVDEGTPSDAGARPKDEGDSTAGGKLHVLGIGGRRTKK-SAKSAGTRKTPGEIRIQKDIAELDGGSVAEITFPNPNNLTTFQVEVTPDSGFWKGASYIFTFTVPALYPHDPPKASSDLVICNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRTNISQFEHTVKRTLKGCVMHGETFDRLL 675
            MIRLKKKQD+EK A+ A  M++DE TPS+A A+PK + +  A GKLHVLGIGGRR K+ SAK+ GT+KTPGEIRIQKDIA+LDGGSVAEITFPNPNNLT+F+V+V PDSGFWKGASY FTFT+PALYPHDPPK     V+C TKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYR NISQFE TVKRTL GCVMHGETF RL+
Sbjct:    1 MIRLKKKQDDEKAAEAAAAMEIDEETPSNAAAQPKAD-EEKAAGKLHVLGIGGRRAKRGSAKATGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVKVQPDSGFWKGASYHFTFTIPALYPHDPPK-----VLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLAGCVMHGETFQRLI 222          
BLAST of mRNA_C-tenellus_contig102.2.2 vs. uniprot
Match: A0A835YZU8_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZU8_9STRA)

HSP 1 Score: 300 bits (769), Expect = 4.460e-101
Identity = 143/185 (77.30%), Postives = 161/185 (87.03%), Query Frame = 1
Query:  121 GGKLHVLGIGGRRTKKSAKSAGTRKTPGEIRIQKDIAELDGGSVAEITFPNPNNLTTFQVEVTPDSGFWKGASYIFTFTVPALYPHDPPKASSDLVICNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRTNISQFEHTVKRTLKGCVMHGETFDRLL 675
            GG + +LGIGGRRTKK+ K A  +KTPGEIRIQKDIAELDGG+VA ITFP+PNNL  F+V VTPDSG+WKGASY FTFT+P  YPHDPPK     V+CNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYR NI++F+  V+RTL+GC M+G+ F RL+
Sbjct:   29 GGGVKLLGIGGRRTKKTGK-APPKKTPGEIRIQKDIAELDGGTVATITFPDPNNLCKFEVLVTPDSGYWKGASYNFTFTIPGHYPHDPPK-----VLCNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNNIAEFQRIVRRTLQGCNMNGQVFPRLV 207          
BLAST of mRNA_C-tenellus_contig102.2.2 vs. uniprot
Match: A0A7S3M2N2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M2N2_9STRA)

HSP 1 Score: 290 bits (743), Expect = 6.300e-97
Identity = 146/228 (64.04%), Postives = 175/228 (76.75%), Query Frame = 1
Query:    1 MIRLKKKQD---EEKTAQTAMDVDEGTPSDAGARPKDEGDSTAGGKLHVLGIGGRRTKKSAKSAGTRKTPGEIRIQKDIAELDGGSVAEITFPNPNNLTTFQVEVTPDSGFWKGASYIFTFTVPALYPHDPPKASSDLVICNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRTNISQFEHTVKRTLKGCVMHGETFDRLL 675
            MIR++KK      EK A+    V+  +P +    PK+E    AGG L +LGIGG++ K  AK AG ++TPGEIRIQKDIAELDGGSVA++ FPNPN+LT F V V+PDSGFW GA Y+FT  +PALYPH+PPK     V C TKIYHPNINL+GNVCLNILRE+WKPVLDINAVIYG+IYLFYEPNP+DPLN EAA+LYRT+ +QFE  VKRTL+G    GE F+RL+
Sbjct:    1 MIRMQKKPAPVVSEKVAEDESAVNGNSPVNVAGEPKEE--EGAGG-LSLLGIGGKQIKSGAKKAGKKRTPGEIRIQKDIAELDGGSVAQVDFPNPNDLTNFTVTVSPDSGFWSGAKYVFTVAIPALYPHEPPK-----VTCRTKIYHPNINLEGNVCLNILREEWKPVLDINAVIYGMIYLFYEPNPDDPLNREAADLYRTDKNQFERVVKRTLQGYSHAGEAFERLI 220          
BLAST of mRNA_C-tenellus_contig102.2.2 vs. uniprot
Match: A0A6V1TYK4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TYK4_HETAK)

HSP 1 Score: 285 bits (729), Expect = 1.230e-94
Identity = 145/236 (61.44%), Postives = 180/236 (76.27%), Query Frame = 1
Query:    1 MIRLKKKQDEEKTA------QTAMDVDEGTPS--DAGARPKDE---GDSTAGGKLHVLGIGGRRTKKSAKSAGTRKTPGEIRIQKDIAELDGGSVAEITFPNPNNLTTFQVEVTPDSGFWKGASYIFTFTVPALYPHDPPKASSDLVICNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRTNISQFEHTVKRTLKGCVMHGETFDRLL 675
            MIRLKKKQ+E +          AMDV++ + +  DA A  +DE   G+S + G + +LGIGG++++        ++TPGE+RIQKDIAELDGG+VA ITFPNPNNLT+F+V VTPD+G W+GA+Y FTF +PA+YPH+PPK     V C+TKIYHPNINLQG VCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLN EAAELYR +  QFE  V+R+L+G  +  E F+RL+
Sbjct:    1 MIRLKKKQEEAERXXXXXXXSEAMDVEQESTNGGDAKADDQDESKGGESKSSGGVKLLGIGGKKSRTGGAKKTKKRTPGELRIQKDIAELDGGNVAVITFPNPNNLTSFEVRVTPDTGMWRGATYHFTFAIPAMYPHEPPK-----VHCHTKIYHPNINLQGKVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNREAAELYRNDARQFERVVRRSLQGYSVGAEQFERLI 231          
BLAST of mRNA_C-tenellus_contig102.2.2 vs. uniprot
Match: A0A7S3PXZ7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXZ7_9STRA)

HSP 1 Score: 271 bits (694), Expect = 1.780e-89
Identity = 140/227 (61.67%), Postives = 160/227 (70.48%), Query Frame = 1
Query:    1 MIRLKKKQDEEKTAQTAMDVDEGTPSDAGARPKDEGDSTAGGKLHVLGIGGRRTK--KSAKSAGTRKTPGEIRIQKDIAELDGGSVAEITFPNPNNLTTFQVEVTPDSGFWKGASYIFTFTVPALYPHDPPKASSDLVICNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRTNISQFEHTVKRTLKGCVMHGETFDRLL 675
            M+ LKKK+ EEK    A            + P D   S+   K+ +LGIGG++ K  +  K  G R+TPGEIRIQKDIAELD G  A I FPN N+LT F V VTPDSG+W GA+YIF F +P  YPH PPK     V C TKIYHPNINL+GNVCLNILREDWKPVLDINAVIYGLIYLFYEPNP+DPLN EAAEL+R NI QFE  V RTL+G  + GE FD+LL
Sbjct:    1 MLALKKKRAEEKARMEAEXXXXXXXXTPSSEPTDTASSSK--KVSLLGIGGKKKKTTEQGKVNGKRRTPGEIRIQKDIAELDAGKAAVIDFPNANDLTEFTVSVTPDSGYWNGATYIFHFAIPDHYPHTPPK-----VTCRTKIYHPNINLEGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPDDPLNQEAAELFRNNIKQFEKVVMRTLRGAYVDGELFDKLL 220          
BLAST of mRNA_C-tenellus_contig102.2.2 vs. uniprot
Match: A0A448YW25_9STRA (UBC core domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YW25_9STRA)

HSP 1 Score: 270 bits (690), Expect = 6.740e-89
Identity = 125/191 (65.45%), Postives = 149/191 (78.01%), Query Frame = 1
Query:  103 EGDSTAGGKLHVLGIGGRRTKKSAKSAGTRKTPGEIRIQKDIAELDGGSVAEITFPNPNNLTTFQVEVTPDSGFWKGASYIFTFTVPALYPHDPPKASSDLVICNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRTNISQFEHTVKRTLKGCVMHGETFDRLL 675
            E     GG++ + GIGG++  K  +S+ T+KTPGEIRIQKDI ELDGG VAE+TFP PN+LT+F V +TPD+G+WKGA Y F F VPA YPH PPK     V C T IYHPNI+LQG VCLNILREDW+PVLDINAVIYGLIYLFYEPNP+DPLNHEAA+L+R +I  FE  V RTL+G  + G TF+RL+
Sbjct:   33 ESTEEGGGQVSLFGIGGQKKTKKGESSATKKTPGEIRIQKDIGELDGGKVAEVTFPKPNDLTSFNVSITPDTGYWKGARYEFEFKVPAHYPHSPPK-----VECKTSIYHPNIDLQGKVCLNILREDWRPVLDINAVIYGLIYLFYEPNPDDPLNHEAADLFRKDIQSFERLVNRTLRGGTLDGVTFERLV 218          
BLAST of mRNA_C-tenellus_contig102.2.2 vs. uniprot
Match: B7G8G3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8G3_PHATC)

HSP 1 Score: 269 bits (688), Expect = 1.450e-88
Identity = 137/231 (59.31%), Postives = 168/231 (72.73%), Query Frame = 1
Query:    1 MIRLKKKQDEEKTAQ--TAMDVDEGTP---SDAGARPKDEGDSTAGGKLHVLGIGGRRTKKSAKSAGTRK-TPGEIRIQKDIAELDGGSVAEITFPNPNNLTTFQVEVTPDSGFWKGASYIFTFTVPALYPHDPPKASSDLVICNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRTNISQFEHTVKRTLKGCVMHGETFDRLL 675
            M+ LKKK++E K A    A D D  TP   S  G    D        K+ +LG+GG++  K+ +   T+K +PGEIRIQKDIAELDGG+VA I FPN N+LT+F V ++PDSG+WKGA+Y FTFT+P  YPH PPK     V C TKIYHPNI+LQG VCLNILREDWKPVLDIN V+YGLIYLFYEPNP+DPLNHEAAEL+R ++ QFE  V RTL+G ++ G  F+RL+
Sbjct:    1 MLALKKKREEAKAAAEAAAKDADADTPIVDSGVGTHSPDNN------KVSLLGVGGKKQTKNGECKATKKRSPGEIRIQKDIAELDGGNVATIDFPNANDLTSFHVAISPDSGYWKGATYHFTFTIPPHYPHSPPK-----VECQTKIYHPNIDLQGKVCLNILREDWKPVLDINGVVYGLIYLFYEPNPDDPLNHEAAELFRKDVRQFERLVSRTLRGGILDGVQFERLV 220          
BLAST of mRNA_C-tenellus_contig102.2.2 vs. uniprot
Match: A0A7S3KW38_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KW38_9STRA)

HSP 1 Score: 267 bits (682), Expect = 9.680e-88
Identity = 130/195 (66.67%), Postives = 157/195 (80.51%), Query Frame = 1
Query:  100 DEGDSTAGGKLHVLGIGGRRTKKSAKSAGT---RKTPGEIRIQKDIAELDGGSVAEITFPNPNNLTTFQVEVTPDSGFWKGASYIFTFTVPALYPHDPPKASSDLVICNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRTNISQFEHTVKRTLKGCVMHGETFDRLL 675
            DEGDS    K+ +LG+GG++ KK+   +GT   ++TPGEIRIQKDIAELDGG VA I FPNPN+LT F V V PDSG+W+GA+Y F+F VP+ YPH+PPK     V C+TKIYHPNI+LQG VCLNILREDWKPVLDINAVIYGLIYLFYEPNP+DPLNHEAAEL+R ++ QFE  V RTL+G V+ G  F++L+
Sbjct:   29 DEGDSN---KVSLLGVGGKK-KKNENGSGTGGKKRTPGEIRIQKDIAELDGGKVATIEFPNPNDLTAFDVRVCPDSGYWQGATYHFSFNVPSHYPHEPPK-----VECHTKIYHPNIDLQGKVCLNILREDWKPVLDINAVIYGLIYLFYEPNPDDPLNHEAAELFRKDVRQFERLVNRTLRGGVLDGVQFEKLV 214          
BLAST of mRNA_C-tenellus_contig102.2.2 vs. uniprot
Match: A0A7R9W2H1_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W2H1_9STRA)

HSP 1 Score: 268 bits (686), Expect = 1.150e-87
Identity = 126/185 (68.11%), Postives = 148/185 (80.00%), Query Frame = 1
Query:  127 KLHVLGIGGRRTKKSAK--SAGTRKTPGEIRIQKDIAELDGGSVAEITFPNPNNLTTFQVEVTPDSGFWKGASYIFTFTVPALYPHDPPKASSDLVICNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRTNISQFEHTVKRTLKGCVMHGETFDRLL 675
            K+ +LGIGG++ K   +  S+  ++TPGEIRIQKDIAELDGG VA I FPNPN+LTTF V VTPD+GFWKGASY+FTF +P  YPH PPK     V C TKIYHPNINL+G VCLNILREDWKPVLDINAVIYGLIYLFYEPNP+DPLNHEAAEL+R +++QF+  V RTL G ++    F RL+
Sbjct:   82 KVSILGIGGKKKKDKGENSSSSKKRTPGEIRIQKDIAELDGGKVATIDFPNPNDLTTFHVRVTPDTGFWKGASYLFTFQIPDHYPHSPPK-----VHCETKIYHPNINLEGKVCLNILREDWKPVLDINAVIYGLIYLFYEPNPDDPLNHEAAELFRRDVNQFQRLVSRTLSGGILDNVQFQRLV 261          
BLAST of mRNA_C-tenellus_contig102.2.2 vs. uniprot
Match: A0A6T7JLN4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7JLN4_9STRA)

HSP 1 Score: 265 bits (677), Expect = 7.290e-87
Identity = 123/185 (66.49%), Postives = 149/185 (80.54%), Query Frame = 1
Query:  127 KLHVLGIGGRRTKKSAK--SAGTRKTPGEIRIQKDIAELDGGSVAEITFPNPNNLTTFQVEVTPDSGFWKGASYIFTFTVPALYPHDPPKASSDLVICNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRTNISQFEHTVKRTLKGCVMHGETFDRLL 675
            K+ +LGIGG++     +  S G ++TPGEIRIQKDIAELDGG VA I FPNPN+LT F V +TPD+GFWKGA Y FTF +PA YPH+PPK     V C T+IYHPNINL+G VCLNILREDWKPVLDINAVIYGLIYLFYEPNP+DPLNHEAA+L+R +++QF   V+RTL+G ++ G  F+RL+
Sbjct:   43 KVSLLGIGGKKNASKGENGSGGKKRTPGEIRIQKDIAELDGGKVAIIDFPNPNDLTMFHVAITPDTGFWKGAKYDFTFQIPAHYPHNPPK-----VTCGTQIYHPNINLEGKVCLNILREDWKPVLDINAVIYGLIYLFYEPNPDDPLNHEAADLFRKDVNQFNRLVQRTLRGGILDGVPFERLV 222          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig102.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JA52_9PHAE8.420e-12880.70UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YZU8_9STRA4.460e-10177.30Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A7S3M2N2_9STRA6.300e-9764.04Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6V1TYK4_HETAK1.230e-9461.44Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3PXZ7_9STRA1.780e-8961.67Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A448YW25_9STRA6.740e-8965.45UBC core domain-containing protein n=1 Tax=Pseudo-... [more]
B7G8G3_PHATC1.450e-8859.31Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S3KW38_9STRA9.680e-8866.67Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7R9W2H1_9STRA1.150e-8768.11Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6T7JLN4_9STRA7.290e-8766.49Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig102contigC-tenellus_contig102:2797..7370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRS2
Preferred nameUBE2M
PFAMsUQ_con
Model size678
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00726,RC00836,RC00837,RC01726
KEGG koko:K00053,ko:K00573,ko:K00698,ko:K10579
KEGG ReactionR02335,R03051,R04439,R04440,R05068,R05069,R05071
KEGG Pathwayko00290,ko00520,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,ko04120,map00290,map00520,map00770,map01100,map01110,map01130,map01210,map01230,map04120
KEGG ModuleM00019,M00570
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008589,GO:0009719,GO:0009725,GO:0009733,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010646,GO:0010648,GO:0010941,GO:0010942,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019788,GO:0023051,GO:0023057,GO:0031974,GO:0031981,GO:0032446,GO:0036211,GO:0042221,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043523,GO:0043525,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045116,GO:0045879,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0061650,GO:0061654,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0140096,GO:1901214,GO:1901216,GO:1901564
Exons6
Evalue2.51e-122
EggNOG OGsKOG0420@1|root,KOG0420@2759|Eukaryota
Ec32 ortholog descriptionUbiquitin-conjugating enzyme E2
Ec32 orthologEc-08_002220.1
EC1.1.1.86,2.1.1.77,2.4.1.16
DescriptionNEDD8 transferase activity
Cds size678
COG categoryO
CAZyGT2
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig102.2.2prot_C-tenellus_contig102.2.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig102 2797..7370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789119.7657962-CDS-C-tenellus_contig102:2796..28231680789119.7657962-CDS-C-tenellus_contig102:2796..2823Choristocarpus tenellus KU2346CDSC-tenellus_contig102 2797..2823 +
1680789119.7777677-CDS-C-tenellus_contig102:3088..32841680789119.7777677-CDS-C-tenellus_contig102:3088..3284Choristocarpus tenellus KU2346CDSC-tenellus_contig102 3089..3284 +
1680789119.790646-CDS-C-tenellus_contig102:3844..39241680789119.790646-CDS-C-tenellus_contig102:3844..3924Choristocarpus tenellus KU2346CDSC-tenellus_contig102 3845..3924 +
1680789119.8045602-CDS-C-tenellus_contig102:5195..52971680789119.8045602-CDS-C-tenellus_contig102:5195..5297Choristocarpus tenellus KU2346CDSC-tenellus_contig102 5196..5297 +
1680789119.8189182-CDS-C-tenellus_contig102:5785..58721680789119.8189182-CDS-C-tenellus_contig102:5785..5872Choristocarpus tenellus KU2346CDSC-tenellus_contig102 5786..5872 +
1680789119.833643-CDS-C-tenellus_contig102:7184..73701680789119.833643-CDS-C-tenellus_contig102:7184..7370Choristocarpus tenellus KU2346CDSC-tenellus_contig102 7185..7370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig102.2.2

>prot_C-tenellus_contig102.2.2 ID=prot_C-tenellus_contig102.2.2|Name=mRNA_C-tenellus_contig102.2.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=226bp
MIRLKKKQDEEKTAQTAMDVDEGTPSDAGARPKDEGDSTAGGKLHVLGIG
GRRTKKSAKSAGTRKTPGEIRIQKDIAELDGGSVAEITFPNPNNLTTFQV
EVTPDSGFWKGASYIFTFTVPALYPHDPPKASSDLVICNTKIYHPNINLQ
GNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRTNI
SQFEHTVKRTLKGCVMHGETFDRLL*
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mRNA from alignment at C-tenellus_contig102:2797..7370+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig102.2.2 ID=mRNA_C-tenellus_contig102.2.2|Name=mRNA_C-tenellus_contig102.2.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4574bp|location=Sequence derived from alignment at C-tenellus_contig102:2797..7370+ (Choristocarpus tenellus KU2346)
ATGATTCGCCTTAAGAAGAAGCAAGATGTAAGTAAAAGTTTTTGCTACTG GAAAAATCACTTTCATGTCGAGAACTGAATGCCAGGGTGGTTGCTTTGAC CGTCCACTCTTACTAGTCTTCTCTCCATCTCTCACGAGATTTGTAAAACC GTTAGTCGGTTGTCAAAGAAGATTCTGTAATGCACTATATAGTATGCTAG GGAGGAGCCCAGTTGGATTGACCAATATCGCGAGTCGATATGGGAAGTGC TCTCAAACAACAGCAACGCTTTGACTAAGTACTATTGCACAGGAGGAGAA GACGGCTCAGACAGCGATGGATGTAGATGAAGGAACTCCTTCCGATGCAG GTGCACGACCTAAAGATGAAGGAGATAGCACAGCAGGTGGAAAGCTCCAC GTTCTGGGGATTGGGGGACGCAGAACAAAGAAGTCCGCCAAATCTGCTGG CACGAGAAAGACTCCCGGGGAAATCCGTATCCAGAAGGGTGAGTTTTACA GGTGGGCAACAAACGGGAGAGCAGCCCAAGTTGCCTTTACCTGTTTAACA ATAACAATACACTAAAAGAGTGTACAGGTTGCGCAGCTACTGTTCTGAGC CACAAGGAGGTGACTGCGTGTTGATCTTGACGCTGCGTTTGTTGCTTTCT TCACGTAATAGACCTATCTTGCTCGGTACCGCATGCATGTTGATCTTTTG ATAATGTGAAGCCTTCAGTTCAACTCTTGTGAAGGTTTAAATAGTGGTGA ACGAGAAACAGCTTATGGAGGTGCTGTGATGCTATCCCTGCTTGAATGTG TGCCTGTCATCAGGCAGCAACCATTGGGCAGCGATCACATATTTGGATAA TTCTGTACCAAAATCATTTCATTGTTTGGTCATCAATGCAGCACGACATT TCTTGTGGTCCAAAGTGTCCGATCGATATTGTTTCCTCCACATCTGACTT CTCAAGTATAGCTGATCTGTTGACAAGAATGTCCCGTAAGACATAGTACG CATTTCCCATGCATCACAATATGTTTGTTGTCTTGGTTACCCTCCCAGAT ATTGCTGAGCTTGATGGTGGGAGTGTGGCGGAAATTACTTTTCCTAATCC AAATAATCTCACAACTTTCCAGGTTGAGGTAAGTACTTGAACGAATACTG TAGTAGCTCGCCTCATAGGGAGAAAACACATGGATCAGACCCAGCTCATA CCCAACCCATACCTTGATCGCAATTCAGATTCAGTATTGAACCTGGGCTA AAGTGCATGGCCCTATTCCTCCACACATATTCATCAGTCCTGGGGCAAAT TTTTCTCATTCTCTATTCTTGATTCCTGGTTTGAGATCTGACTTGGCTGT AAAACAACTTTCACATTAACTCTATGCTTGACAAATGTAAGGGTTATCAT GCTTCTGTGGGAGCTCTGTCGTTTCAGAAAGGCTAGGCTATAAAAATAAT AGTTCCAACCCATTCAGAACAGGCTTTGTGTGGATAAAATGACAGTTTTG TATTCACTCCATACCAGATGTTGGTGGTTCAGAACACTGTTACTTTAATG AGTATATGTAAGTATCCTCTTACTCAGAAAAATGAAGAATAGGCTGAATT ATGAAAGAGCAGTTCCATACATTGCCTTTTTCAAAGTAGGTGAAGGAATC AACAACAGAATATCGATAGGCTGTGTGGCGAATGGAACTGATATAGACGA ATTGCAGGTCAGGCAGGGTGCCACTGTTTGGGCACATAACCAACCCAACG AAGTGGAACACCTTAAATATCTACGCCTGGGGTGCTCTCATTGAAGGGTT TCACTAAATTAGGGTTGCTTGAGGGCTGCTTGCACTCTCTTCACAAGAGC TGACGCAACCTGCCTGCTACAAAATACCCTGCTGGTCCCATCGGTACATT GGCACCAGCAGCAGTAATGATGGGGCCTCCGTCCTAAATTTGCTAGCATG GGAAAGTTGCAGGGATGGATTGCGACCATTCAATATGCCAAGCAGACCAT GCATTTAACAAGGAATGTGATCGCCACCACATCGGTACCCATTTTTTCAA CCAGCCTTGTGTTTGTTCAGTCAAGTGTACACACGGTTAATGGAAATTTG GGGGAGGTCAACTTGTTTGGCACCATGATAAGCCTGTTTTTATTGGATTG TGGCCGTTGAAAGGTCATTAGGACATAGAGTTCGTAAGGAACCTCATTGT GACCAGTGCACACCCTGATTAATCTTGTTCACAGATGTACCTGTAGTCCC TACTACTATATGGTAGGGTGGCTCTCTTTGGTTGTGTACATGGGTGGAAC ATTCCACTTGGCTGAGACTTGAAATGGGAAGAACATACCATCAAGGATAT GAACACCCATCCTGTTTCCTACTGCTTGCTGCGTGTGCCTCCTTTGCAGG TGACCCCGGATAGTGGCTTCTGGAAAGGGGCTTCCTACATCTTCACATTT ACTGTACCTGCCCTATATCCACATGATCCTCCAAAGGCAAGTTCGGACCT AGTGGATGACTTGTACAAATGTACAGATAGTTACAAGTGTAGAGCTTAAA CAATTTTGTCAAGTACATGTGCAGTAAACATATGGAATGCATTCTACAAC TGCGGCAGTATGCAAAAATGGTACATACAACATCCTTAAATTCTTGGTCA ATATTTCATATCGTTCACAACTTTATATATATATATTTAAAATCTCACTG TAGGGAGAGCAATATACTTGTTTGGAAAGTGTACCCTTGGGCCCTGAACT CTTGATCTCCACCCCAGTATTTTTCTGGAAGAGGTAGACCTTGAGATGCT TCTGTGGGACAACCAAAACTTGTTGTGATGAGTAAGATCAGCGCATTACA CATGAGTATGTTCAAACTCTGCCTTGGATAACTCGACAAGATTGCTACAG TACTATAACTTCGAGACTAGTTTGATATTGCAAATCTGCTGGTGTTTGTT TCCTGAGCCTCTCCCTATGCATTTCTCTTGTTGCCTCAGGTAATCTGCAA CACCAAGATTTACCATCCCAACATCAATTTGCAGGGTAATGTGTGCCTAA ACATCTTGCGAGAGGACTGGAAGCCGGTGAGTGTGCTTGACTCATCCTGT TGTCCACAGGCTATTTCAATTTTGATGACCAATAGTAGTGAACAGTACAT TATTAAGACAGAGACATGTTGCGCCTTAATCCGTAAGAGCTAATTTCCAC ACCAGGACTAGTTTGACTGGATTGTGATACATCAGATGCAGCTTGTTGAA AACACTGGAAACCTTTGAGAGTTTAGATTGGAAACATTTAATAGAATATT ACAATGTATAGTTGGTGTATTTGGCAGCTTCAATATTCAGTACAAGAGTG CCCTCCTATGGTGGTTGTGGTTGATGTTACTGATACTGTTGATAGTGTGC TATTCATATAGTTTTGGAGTGTGTATACAGTTAGAAGGTCAAGGAGCTTG ATACCCACTTATATGGGCTGCTGAGTACTATTGGACTAGGTGATACTTCC TGTCGTATGTCATGGCTTAAGGTGACTCCTTCAGTATGGTAAAGTGTATC TTGGTTGTGTAATTTTGCTATGGTCAATTGTTAATTGATACCGAACTAGC TCTAAGAGTTCAGAACTTGAGAGGTTTGGGAATAAAATTCACTGGTTGTG TGTTGGATCCAGTCAAAATTTCAAATCTATCCATAGTATTTGCTTAGTTA CACATTTTGTTTTGTGTTAGTGTCCAATTGATTAATTACTTCCAGATTTT GAAGAGATATTCACGGTCCAAAAATCGAGGTATCATTGCCATCTCTTGTT TCAATATCCACAAATATATTCTCCCAACCACCTTTCTATTGGAGTGTTGG CATGACTGTTGTGTACCTACTTATTCCTCTATGAAGTCATTTTCATCCTC ACTACAGAGGTGGAATTCTTTTTCCAGTTTGACAAGTGGTATTATCATAG GCAATACTGTCTATGGGGACAGTCAAATTGTGCCTTCTACCACTTTAGTA TAGTAAGAAATTCTCTATGTTAAGATAAGGACGTGCACAAAGCCTAGTTT CGAGAAGAGGGACTTGTTTATGCGATCAGGTTGGCAGATTGTTCTAGGAA AAACAAATTACCCGTCGTACCCAACTAAAAAATAATCTGCTATTTTACTA ACACCTCTAATGAAGTTATGAAGACCATGTTTGAGTTGAAAAACTGTCTT TACGCACCTCTTCTCATGAAATTTTCTCATGCTGTTGCTATAGACATGTG AGACACACTTAGTGCATGGCCAACACAGGTTCGTAACAGAAGGGGAGGAT TCTCTTTAAGAAAAAACAGTTGGTGCCATGATACAAAAAACAATTCCTGC ACTTACAAAATTATTATTCCATCTTGTGTATACCTCAGGTGCTGGACATC AACGCAGTTATTTATGGCCTTATTTACCTTTTCTATGAGCCAAACCCTGA GGATCCACTTAACCATGAGGCAGCAGAGCTTTATCGCACTAACATAAGCC AGTTTGAACATACTGTAAAAAGGACACTCAAAGGTTGTGTTATGCATGGA GAGACATTCGATCGACTTCTATGA
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Coding sequence (CDS) from alignment at C-tenellus_contig102:2797..7370+

>mRNA_C-tenellus_contig102.2.2 ID=mRNA_C-tenellus_contig102.2.2|Name=mRNA_C-tenellus_contig102.2.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=678bp|location=Sequence derived from alignment at C-tenellus_contig102:2797..7370+ (Choristocarpus tenellus KU2346)
ATGATTCGCCTTAAGAAGAAGCAAGATGAGGAGAAGACGGCTCAGACAGC
GATGGATGTAGATGAAGGAACTCCTTCCGATGCAGGTGCACGACCTAAAG
ATGAAGGAGATAGCACAGCAGGTGGAAAGCTCCACGTTCTGGGGATTGGG
GGACGCAGAACAAAGAAGTCCGCCAAATCTGCTGGCACGAGAAAGACTCC
CGGGGAAATCCGTATCCAGAAGGATATTGCTGAGCTTGATGGTGGGAGTG
TGGCGGAAATTACTTTTCCTAATCCAAATAATCTCACAACTTTCCAGGTT
GAGGTGACCCCGGATAGTGGCTTCTGGAAAGGGGCTTCCTACATCTTCAC
ATTTACTGTACCTGCCCTATATCCACATGATCCTCCAAAGGCAAGTTCGG
ACCTAGTAATCTGCAACACCAAGATTTACCATCCCAACATCAATTTGCAG
GGTAATGTGTGCCTAAACATCTTGCGAGAGGACTGGAAGCCGGTGCTGGA
CATCAACGCAGTTATTTATGGCCTTATTTACCTTTTCTATGAGCCAAACC
CTGAGGATCCACTTAACCATGAGGCAGCAGAGCTTTATCGCACTAACATA
AGCCAGTTTGAACATACTGTAAAAAGGACACTCAAAGGTTGTGTTATGCA
TGGAGAGACATTCGATCGACTTCTATGA
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