mRNA_C-tenellus_contig8280.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8280.3.1
Unique NamemRNA_C-tenellus_contig8280.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8280.3.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE)

HSP 1 Score: 266 bits (681), Expect = 1.820e-78
Identity = 143/268 (53.36%), Postives = 188/268 (70.15%), Query Frame = 1
Query:   22 FQVFSSVSTTVFQTFACEHFEEFNARYLRADYSIMCDTQEHGFYKAYAGIMILVYPIGIPLLYFVILWRHRTKLDPK-----AESTILESAAPER-REALGKNMNEREL--WQQRKQLEQMTEWELKERVRRRGYDPELTPTLFLWKDFGPNLYYYEVVECGRRILLTGALIFIEPQSAAQAATACIFAFLSLLGFELLRPHLDEGDSWLYRLGCVIIFFSNFLGLLIKVNVSEEDNISQKIFGVLLIIVNIGLLFAIWGTTYYGAQQ 801
            F VF+S ST VF+TFAC+        YLRADYS+ C+T  H +YK YAG+MI+VYPIGIPLLY  ILW +R  L+P+      +  + E+  P +  +A G ++  R+       + + + T  EL+ER+++R  +P+L P++FLWKDF P++YYYEV+ECGRRILLTGALIFI P +AAQAA AC+FAF SLLGFELLRPHLD  DSWLYRLGCV IF SNFL LL KV+ + E N  + I G +LI VN+ L+ A+  +T++  QQ
Sbjct:  732 FLVFTSTSTVVFKTFACDDEAVEGESYLRADYSLSCNTATHTWYKVYAGVMIVVYPIGIPLLYAFILWINRESLNPRPRPKATDDDVDETTVPAQDADASGWSVASRKAGGXXXGEYVSKETPEELEERLQKRRQNPDLVPSMFLWKDFDPDMYYYEVIECGRRILLTGALIFIAPHTAAQAAMACMFAFASLLGFELLRPHLDPADSWLYRLGCVTIFLSNFLALLTKVDAAGESN--RSILGGILIAVNVLLVVAVLASTWFATQQ 997          
BLAST of mRNA_C-tenellus_contig8280.3.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI)

HSP 1 Score: 267 bits (683), Expect = 3.440e-78
Identity = 144/263 (54.75%), Postives = 183/263 (69.58%), Query Frame = 1
Query:   22 FQVFSSVSTTVFQTFACEHFEEFNARYLRADYSIMCDTQEHGFYKAYAGIMILVYPIGIPLLYFVILWRHRTKLDPKAE-STILESAAPERREALGKNMNE--RELWQQRKQLEQMTEWELKERVRRRGYDPELTPTLFLWKDFGPNLYYYEVVECGRRILLTGALIFIEPQSAAQAATACIFAFLSLLGFELLRPHLDEGDSWLYRLGCVIIFFSNFLGLLIKVNVSEEDNISQKIFGVLLIIVNIGLLFAIWGTTYYGAQQ 801
            F VF+S ST VF+TFAC+        +LRADY I C T +H +Y+ YAG+MI VYPIGIPLLY  ILWR+R  L+P+A  ST LE         L   M+E  RE           TE EL++R+ +R  +P+L P++FLWKDFGP++YYYEV+ECGRRILLTGALIFI P + AQAA AC+FAF SLLGFELLRPHLD  DSWLYRLGCV+IF SNFL LLIK + + E   S+ + G +++ +NI L+ A+  +T++  QQ
Sbjct: 1303 FLVFTSSSTIVFKTFACDDEAVEGESFLRADYGISCKTNKHAWYEVYAGVMIAVYPIGIPLLYAFILWRNRDSLNPRAYYSTGLE---------LDGEMSEGPRE-----------TEEELQDRLEKRRQNPDLVPSMFLWKDFGPDMYYYEVIECGRRILLTGALIFIAPHTVAQAAIACMFAFASLLGFELLRPHLDPADSWLYRLGCVVIFLSNFLALLIKADTAGEG--SRSVLGGIMVAINIFLILAVLFSTWFATQQ 1543          
BLAST of mRNA_C-tenellus_contig8280.3.1 vs. uniprot
Match: D7FRH1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH1_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 1.240e-74
Identity = 139/261 (53.26%), Postives = 177/261 (67.82%), Query Frame = 1
Query:   22 FQVFSSVSTTVFQTFACEHFEEFNARYLRADYSIMCDTQEHGFYKAYAGIMILVYPIGIPLLYFVILWRHRTKLDPKAESTILESAAPERREALGKNMNERELWQQRKQLEQMTEWE-LKERVRRRGYDPELTPTLFLWKDFGPNLYYYEVVECGRRILLTGALIFIEPQSAAQAATACIFAFLSLLGFELLRPHLDEGDSWLYRLGCVIIFFSNFLGLLIKVNVSEEDNISQKIFGVLLIIVNIGLLFAIWGTTYYGAQQ 801
            F VF+S ST  F+TF C+        YLRADYS+ C T +H +Y+ YAGIMI+VYPIGIPLLY  ILW +R  L+P+  S     A P+   A+ K ++          L      + L+ER+ +R  +P+L P++FLWKDFGP++YYYEV+ECGRRILLTG LIF    +AAQAA ACIFAF+SLLGFELLRPHLD  D WLYRLGCVIIF SNFL LLIKV+ + E N  +   G +LI VN+ L+ A+  T+++  QQ
Sbjct:  906 FLVFTSASTMAFKTFPCDDEAVEGESYLRADYSLSCKTDKHMYYRIYAGIMIVVYPIGIPLLYAFILWINRDSLNPRVRS----EAIPQPTGAVEKKVS----------LVPANYGDGLQERLDQRRRNPDLVPSMFLWKDFGPDMYYYEVIECGRRILLTGVLIFFAAGTAAQAAMACIFAFVSLLGFELLRPHLDPADMWLYRLGCVIIFLSNFLALLIKVDAAGEGN--RAALGGILIAVNVFLILAVLSTSWFATQQ 1150          
BLAST of mRNA_C-tenellus_contig8280.3.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 1.990e-74
Identity = 139/263 (52.85%), Postives = 178/263 (67.68%), Query Frame = 1
Query:   22 FQVFSSVSTTVFQTFACEHFEEFNARYLRADYSIMCDTQEHGFYKAYAGIMILVYPIGIPLLYFVILWRHRTKLDPK--AESTILESAAPERREAL-GKNMNERELWQQRKQLEQMTEWELKERVRRRGYDPELTPTLFLWKDFGPNLYYYEVVECGRRILLTGALIFIEPQSAAQAATACIFAFLSLLGFELLRPHLDEGDSWLYRLGCVIIFFSNFLGLLIKVNVSEEDNISQKIFGVLLIIVNIGLLFAIWGTTYYGAQQ 801
            F VF+S ST  F+TF C+        YLRADYS+ C T +H +++ YAGIMILVYPIGIPLLY  ILW +R  L+P+  +E+T   +   E   AL   N  +                +L+ER+ +R  +P+L P++FLWKDFGP++YYYEV+ECGRRILLTG LIF    +AAQAA ACIFAF+SLLGFELLRPHLD  D+WLYRLGCVIIF SNFL LLIKV+ + E N  +   G +LI VN+ L+ A+  T+++  QQ
Sbjct: 1248 FLVFTSTSTMAFKTFPCDDEAVEGESYLRADYSLSCKTDKHMYFRIYAGIMILVYPIGIPLLYAFILWINRESLNPRVRSEATPQPTGGVEMDVALVPANYGD----------------DLEERLEQRRNNPDLVPSMFLWKDFGPDMYYYEVIECGRRILLTGVLIFFAAGTAAQAAMACIFAFVSLLGFELLRPHLDPADAWLYRLGCVIIFLSNFLALLIKVDAAGEGN--RAALGGILIAVNVFLILAVLSTSWFATQQ 1492          
BLAST of mRNA_C-tenellus_contig8280.3.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 4.960e-74
Identity = 130/261 (49.81%), Postives = 175/261 (67.05%), Query Frame = 1
Query:   22 FQVFSSVSTTVFQTFACEHFEEFNARYLRADYSIMCDTQEHGFYKAYAGIMILVYPIGIPLLYFVILWRHRTKLDPKAES-TILESAAPERREALGKNMNERELWQQRKQLEQMTEWELKERVRRRGYDPELTPTLFLWKDFGPNLYYYEVVECGRRILLTGALIFIEPQSAAQAATACIFAFLSLLGFELLRPHLDEGDSWLYRLGCVIIFFSNFLGLLIKVNVSEEDNISQKIFGVLLIIVNIGLLFAIWGTTYYGAQQ 801
            F VF + ST  F+TFAC+        YLRADYSI C T +H +YK YAG+MI+VYP+GIPLLY  ILW++R  L+P+ ++  ++   A    + +    N  +L               +E++ +R  +P+L P++FLWKDFGP +YYYEVVECGRRILLTG L+FI P +AAQ A AC+FAF+SLLGFELLRPHLD  DSWLYRLGC+ IF SNFL LLIKV+   + N    +FG ++I +N+ L+ A+   +++  QQ
Sbjct: 1220 FLVFIATSTMAFKTFACDDEAVEGKSYLRADYSIQCHTDKHEWYKVYAGVMIMVYPVGIPLLYAFILWQNRESLNPRVKTGAVVNPRADGSTDRITYKANSEDL---------------EEKLEKRRRNPDLIPSMFLWKDFGPEIYYYEVVECGRRILLTGVLVFISPNTAAQVAAACMFAFVSLLGFELLRPHLDPVDSWLYRLGCLCIFLSNFLALLIKVDSGVDGN--HDVFGAIMIGINMFLIMAVLLASWFSMQQ 1463          
BLAST of mRNA_C-tenellus_contig8280.3.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 3.100e-64
Identity = 127/264 (48.11%), Postives = 169/264 (64.02%), Query Frame = 1
Query:   22 FQVFSSVSTTVFQTFACEHFEEFNARYLRADYSIMCDTQEHGFYKAYAGIMILVYPIGIPLLYFVILWRHRTKLDPKAE-STILESAAPERREALG---KNMNERELWQQRKQLEQMTEWELKERVRRRGYDPELTPTLFLWKDFGPNLYYYEVVECGRRILLTGALIFIEPQSAAQAATACIFAFLSLLGFELLRPHLDEGDSWLYRLGCVIIFFSNFLGLLIKVNVSEEDNISQKIFGVLLIIVNIGLLFAIWGTTYYGAQQ 801
            F VF + ST  F+TFAC+        YL ADY I C T +H +YK YAGIMIL                    L+P AE ST+++S+A ER+       K M+E                +L+E++ +R  +P+L P++FLWKDFGP++YYYEVVECGRRILLTG LIFI P +AAQ A AC+FAF+SLLGFELLRPHLD  DSWLYRLGC+ IF SNFL LLIKV+ + + N  + +FG ++I++N+ L+ A+   +++  QQ
Sbjct: 1227 FLVFIATSTMAFKTFACDDEAVEGESYLGADYGIQCHTDKHTWYKVYAGIMIL-------------------SLNPPAEASTLVDSSADERKTNKAYKPKFMSE----------------DLEEKLEKRRRNPDLVPSMFLWKDFGPDMYYYEVVECGRRILLTGVLIFISPNTAAQVAAACMFAFVSLLGFELLRPHLDPVDSWLYRLGCMCIFLSNFLALLIKVDSAGDSN--RDVFGWIMIVINLLLIMAVLLASWFSMQQ 1453          
BLAST of mRNA_C-tenellus_contig8280.3.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 2.480e-60
Identity = 111/257 (43.19%), Postives = 152/257 (59.14%), Query Frame = 1
Query:   28 VFSSVSTTVFQTFACEHFEEFNARYLRADYSIMCDTQEHGFYKAYAGIMILVYPIGIPLLYFVILWRHRTKLDPKAESTILESAAPERREALGKNMNERELWQQRKQLEQMTEWELKERVRRRGYDPELTPTLFLWKDFGPNLYYYEVVECGRRILLTGALIFIEPQSAAQAATACIFAFLSLLGFELLRPHLDEGDSWLYRLGCVIIFFSNFLGLLIKVNVSEEDNISQKIFGVLLIIVNIGLLFAIWGTTYYGAQ 798
            V+S VST VFQ FACE F E    +LRAD+ I CDT +H  YK YA +MI +YP+GIP  ++  L R R++++P  +  + +     R+  + + MN+R                          D  + PT FLW  + PN YYYEV EC RR+LLTG L+F+ P +  Q A  C+FAFLSLL FELLRPH D  D  LYR GC++IFF+NFL L+IK NV+  D+    ++ V+LIIVN+    +I+  T+  A+
Sbjct: 1632 VYSQVSTVVFQAFACEDFPEIGKSFLRADFRIECDTPKHDNYKIYAAVMICIYPLGIPAAFWYFLRRQRSRINPPTDKGLKDQRG--RKHVVEEKMNQRRT------------------------DRAIAPTSFLWNAYYPNRYYYEVFECMRRLLLTGLLVFVVPDTPGQVAFGCVFAFLSLLAFELLRPHTDHLDMQLYRTGCLVIFFTNFLALMIKANVANPDSRGSAVYSVVLIIVNVLFFLSIFWNTWAAAK 1862          
BLAST of mRNA_C-tenellus_contig8280.3.1 vs. uniprot
Match: A0A6H5K4A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A5_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 1.550e-59
Identity = 109/249 (43.78%), Postives = 150/249 (60.24%), Query Frame = 1
Query:   28 VFSSVSTTVFQTFACEHFEEFNARYLRADYSIMCDTQEHGFYKAYAGIMILVYPIGIPLLYFVILWRHRTKLDPKAESTILESAAPERREALGKNMNERELWQQRKQLEQMTEWELKERVRRRGYDPELTPTLFLWKDFGPNLYYYEVVECGRRILLTGALIFIEPQSAAQAATACIFAFLSLLGFELLRPHLDEGDSWLYRLGCVIIFFSNFLGLLIKVNVSEEDNISQKIFGVLLIIVNIGLLFAIW 774
            V++ +ST VFQTFACEH  E   RYLRAD+ I CDTQ H  YKAYAG+M+ +YP+GIP ++   L R R++++P  +            EAL K    R + +++  +              R  D  + PT FLW  + P  YYYEV EC RR+LLTG L+F+ P +  Q A +CIFA LSL+ FELLRPH++  D  LYR GC++I F+NFL L+IK   +++D+     + V L+IVNI    +IW
Sbjct: 1437 VYTQISTVVFQTFACEHLPEIGKRYLRADFGIECDTQRHTLYKAYAGVMMCIYPLGIPAVFLYFLLRQRSRINPPTD------------EALKKRRGGRHVVERKMTV--------------RDKDQSIAPTSFLWNAYFPKCYYYEVFECIRRLLLTGILVFLVPDTPGQVAFSCIFAILSLMVFELLRPHVNHIDRQLYRTGCLVILFTNFLALVIKSGAADKDSSGSAAYSVALVIVNIMFFLSIW 1659          
BLAST of mRNA_C-tenellus_contig8280.3.1 vs. uniprot
Match: D8LTT7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT7_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 2.920e-59
Identity = 130/348 (37.36%), Postives = 182/348 (52.30%), Query Frame = 1
Query:   22 FQVFSSVSTTVFQTFACEHFEEFNARYLRADYSIMCDTQEHGFYKAYAGIMILVYPIGIPLLYFVILWRHRTKLDPKAESTILESAA-----------PERRE-------------------ALGKNMNERELWQ--------------------------------QRKQLEQMTEW--------------------------ELKERVRRRGYDPELTPTLFLWKDFGPNLYYYEVVECGRRILLTGALIFIEPQSAAQAATACIFAFLSLLGFELLRPHLDEGDSWLYRLGCVIIFFSNFLGLLIKVNVSEEDNISQKIFGVLLIIVNIGLLFAIWGTTYYGAQQ 801
            F VFSSVST VF T++C++ E+     LRADYSI CD  +H FY+AYA +MIL+YPIG+P+L+ V+L + R K++P  ++  L +A              R E                   A G++  + EL                                  +R+ L   +                            + +E +  R  DP+L  T FLW+ + P+ YYYE VECGRR LLTGAL+F+ P +A QAA A +FAF+ LLGFELLRPHL   D+W+YR+GC+ IFFSNFLGL+ K +VS+E+  SQ+ +G+LLI V++ ++ AI    Y   QQ
Sbjct: 1323 FLVFSSVSTAVFSTYSCDYLEDLGVSLLRADYSISCDHPDHTFYEAYAALMILLYPIGVPMLFAVLLLKRREKINPPTQTLDLAAATGPVLMERVSSDTARMENEGSGHPGAAAATPRATPTARGRDSGDIELAGMKDTSRGARRGSAVSVASEGDSQYHRRCSGEGERRPLSNGSSGXXXXXXXXXXXXXXXXXXXXXXGLVQDREEVLENRAQDPDLQSTRFLWEPYEPDNYYYETVECGRRCLLTGALVFVLPNTAGQAAGASVFAFVGLLGFELLRPHLSHTDAWMYRIGCITIFFSNFLGLMAKADVSDEEAQSQEAYGLLLIAVHVLMVLAILAQAYVSMQQ 1670          
BLAST of mRNA_C-tenellus_contig8280.3.1 vs. uniprot
Match: D7G119_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G119_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 1.810e-58
Identity = 108/249 (43.37%), Postives = 149/249 (59.84%), Query Frame = 1
Query:   28 VFSSVSTTVFQTFACEHFEEFNARYLRADYSIMCDTQEHGFYKAYAGIMILVYPIGIPLLYFVILWRHRTKLDPKAESTILESAAPERREALGKNMNERELWQQRKQLEQMTEWELKERVRRRGYDPELTPTLFLWKDFGPNLYYYEVVECGRRILLTGALIFIEPQSAAQAATACIFAFLSLLGFELLRPHLDEGDSWLYRLGCVIIFFSNFLGLLIKVNVSEEDNISQKIFGVLLIIVNIGLLFAIW 774
            V++ +ST VFQTF+CE   E    YLRAD+ I CDTQ H  YKAYAG+MI +YP+GIP ++F  L R R++++P  +            EAL K    R + +Q+  +              R  D  + PT FLW  + P  YYYEV EC RR+LLTG L+F+ P +  Q A +CIFA +SL+ FELLRPH++  D  LYR GC++I F+NFL L+IK   +++D+     + V L+IVNI    +IW
Sbjct: 1204 VYTQISTVVFQTFSCEDLPEIGKSYLRADFRIECDTQRHTLYKAYAGVMICIYPLGIPAIFFYFLVRQRSRINPPTD------------EALKKRRGGRHVAEQKMTV--------------RDQDQSIAPTSFLWSAYFPTCYYYEVFECIRRLLLTGILVFLVPDTPGQVAFSCIFAIVSLMVFELLRPHVNNLDRQLYRTGCLVILFTNFLALVIKSGAADKDSSGSAAYSVALVIVNIMFFLSIW 1426          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8280.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCK8_9PHAE1.820e-7853.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRH0_ECTSI3.440e-7854.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FRH1_ECTSI1.240e-7453.26Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JS31_9PHAE1.990e-7452.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRH4_ECTSI4.960e-7449.81Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FRH3_ECTSI3.100e-6448.11Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JRA9_9PHAE2.480e-6043.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4A5_9PHAE1.550e-5943.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTT7_ECTSI2.920e-5937.36Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7G119_ECTSI1.810e-5843.37Asn/thr-rich large protein family protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8280contigC-tenellus_contig8280:1982..4993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LRF6
Model size801
Max annot lvl2880.D8LRF6|-
Hectar predicted targeting categorysignal peptide
Exons4
Evalue2.41e-55
EggNOG OGs2D43J@1|root,2STRI@2759|Eukaryota
Cds size801
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790093.685222-CDS-C-tenellus_contig8280:1981..21461680790093.685222-CDS-C-tenellus_contig8280:1981..2146Choristocarpus tenellus KU2346CDSC-tenellus_contig8280 1982..2146 -
1680790093.700491-CDS-C-tenellus_contig8280:2554..27451680790093.700491-CDS-C-tenellus_contig8280:2554..2745Choristocarpus tenellus KU2346CDSC-tenellus_contig8280 2555..2745 -
1680790093.7189028-CDS-C-tenellus_contig8280:3505..37701680790093.7189028-CDS-C-tenellus_contig8280:3505..3770Choristocarpus tenellus KU2346CDSC-tenellus_contig8280 3506..3770 -
1680790093.7304568-CDS-C-tenellus_contig8280:4813..49931680790093.7304568-CDS-C-tenellus_contig8280:4813..4993Choristocarpus tenellus KU2346CDSC-tenellus_contig8280 4814..4993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8280.3.1prot_C-tenellus_contig8280.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8280 1982..4993 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8280.3.1

>prot_C-tenellus_contig8280.3.1 ID=prot_C-tenellus_contig8280.3.1|Name=mRNA_C-tenellus_contig8280.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=267bp
MVVCSFFFQVFSSVSTTVFQTFACEHFEEFNARYLRADYSIMCDTQEHGF
YKAYAGIMILVYPIGIPLLYFVILWRHRTKLDPKAESTILESAAPERREA
LGKNMNERELWQQRKQLEQMTEWELKERVRRRGYDPELTPTLFLWKDFGP
NLYYYEVVECGRRILLTGALIFIEPQSAAQAATACIFAFLSLLGFELLRP
HLDEGDSWLYRLGCVIIFFSNFLGLLIKVNVSEEDNISQKIFGVLLIIVN
IGLLFAIWGTTYYGAQQ
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mRNA from alignment at C-tenellus_contig8280:1982..4993-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8280.3.1 ID=mRNA_C-tenellus_contig8280.3.1|Name=mRNA_C-tenellus_contig8280.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3012bp|location=Sequence derived from alignment at C-tenellus_contig8280:1982..4993- (Choristocarpus tenellus KU2346)
ATGGTGGTTTGCTCCTTTTTTTTTCAGGTGTTCAGTTCCGTCTCCACCAC CGTGTTCCAGACTTTTGCCTGTGAGCACTTTGAAGAGTTCAATGCAAGGT ACCTGAGGGCTGATTATAGCATCATGTGTGACACTCAGGAGCATGGCTTC TACAAGGCCTATGCTGGCATCATGATCCTGGTGAGATTGCTGCTGTCAGA CGACCATGATTTCTCAGCCCTAACCCTACCCCACCACCATCCCTGCTAAC TTTCATTGTTTTCTTTGAGAGGCCTTATCAATCAGCATTGAGTAGATTCC ATGGAGTACAGAGAATCCACCTATGGGGGGAGGATTGTCTTGCAGGGTAA AGCAATGAACAGTATTGTGTTGAGCAATGTGGTGTAATGTGGTCTGGTAT GGTACAACACCATTACCGCATAGTGTGCTGTGGTGGGTGTTATATAATAG AGGTAGGGATTTGTCTAAATGAGTTGCGGTGATGTGTGTAAGGGAAATCG ACCCCTATCCTTTCTGTGAATGTACCCATGTCTGACTGACTCTTCCAAAC TCCAACCCCAATCATACCTCTAACCCTAACCCTAACCCTAACCCTAACCC TTTGCGTGCATGAGGTTTGTGGCAACTGAGAGAATGTTAGGAGGCATAGT GTGCAGCAGATTTAATTTTTTTGTGCCCTGCGCCACATTGTAGGTTAGGG TTAGGGTTAGGGGTCAGGGTTAACCCCAGGCTGACACTTGAGACTGAAAT AGTGAAAGGATAGATTATCCCTAACCCTATAATAGTCAATACGCAAGATT TACTTTGAAATTTGATGCTGTTGCAAGTATTACTTTGAAATTTCAGAGAA GAGTTTTCTGACTCTGCTGGTCTCCACCCAGGGCTCATTTTTTTTTTTTG CTGTCAGTTCTATCTGGGCTAGGGTTAGGGTGGTGAAGTGGATAGCATTT TTTGTTCTTTTTATTTTATTTTTTTTAGTGGTAATCACAACTACCATCTA CCATACAGGTTTACAGTTGTTTGTGCACGTTCTTTTTCTTTTCTTTTTTT TTTTTGAATGCAATTCTCGGCAGTTAAGAATTCGTCTATAATTAAGTTTT AATAGGGTTTTATCTCCTATGGTTTTAGCTAAATTTTGACTAGTTTTGAC TAGTTTTGAACCCCTTTCCGCCCCCCCCTTCTTTCCCTTGGAAATTTTCA CATTTTGTCATGACAAATTACAGGTATACCCGATAGGTATTCCACTCCTG TACTTTGTGATCCTATGGAGACATCGGACAAAGCTAGATCCCAAGGCGGA GAGCACTATCCTTGAGAGCGCTGCTCCTGAGAGACGTGAAGCGCTGGGGA AGAATATGAATGAGAGGGAGCTGTGGCAACAAAGGAAACAGCTAGAGCAG ATGACAGAATGGGAGTTGAAGGAGAGGGTGCGGAGGCGGGGATATGACCC AGAATTGACCCCCACGTTGTTCCTGTGGAAAGACTTTGGTAGGTGGATGA TGAACTTTTGGGTTTTTATGTATGAGTGCAATGTTGTTTAGTACTTAGAG TTTGGCCGGGGGGGTTTTTCTCCACTAATGGTCAGAGGGTTTATGTGTAC ACAAGAGTCAGGGAGCATGTTGTAGAGAAGTGAAATAGAGGTGGCGTGGA TACATGGGAAGGGATTTCTCGAGGTGTGTTGGAAACTCTTGCTTAGGGTT AGGGTTAGGGTTAGGGTTAACCACACTTGTCCTTTTTTCGTTTCACTGTA GCTCTAGCTTGTAGCTCTAGTTTGTAGCCCTGTTTAGGAATTGCTTGTGT GACATGACACAATACAGATTTGAAACAAATGTTCATGGGGGGATCTCCAT GACGTCTAGCACCTGAGGGTGGATGTGTATCTCCTTTGTGTATGAATTAG CATTTTGTCATGGTTTAGGGTTAGGGTTAGGGTTAGGTATCTATGTGCGG TTGTTGAGAAAAAGGAGATCATGTTGGTGCAGTTCTTGCATGCCTTGTCT CCCTGCTCTCAGTATGGACGATTTGTTGTCACTTCTTAAGCTGTTTCGCT GACATTTAGTTGAGGGTATTGTGGAGGGGTATTTTGTTCCCCACGCCGAG GTATAGATAAATGTCCTGGTAGCGCAGGTCGGAGTGGGCAAGGGCAAATA GAATATCATCTTTCATTACTGCTGTTATACTTACACTAGTTTGATTCATT ACCCTCCAATACTCCATCACCCCCTAACCCTAACCCCATCCGCTCTAGGT CCCAACCTCTATTACTATGAGGTGGTTGAGTGTGGAAGGAGGATTCTTCT CACTGGAGCACTGATCTTTATTGAGCCACAGTCAGCTGCTCAGGCTGCCA CAGCCTGCATATTTGCTTTTCTGAGCCTGCTTGGCTTTGAGTTGCTCCGT CCACACCTGGACGAGGGGGACTCGTGGTTGTACCGTTTGGTGAGTTTGTT GCTTTTGTCCTCCAGCAGACAGCAGACTTTGGTTGGAATTGGGAAGGTAT TTGTTGTACAACTGCTTTTTGCACAGGAAGTTGTCCTTTATTGAAACCGG GGATATTTTATATATGTTTTCATATATTTTATATGGAGTATCAATTTTTT TTTTATGGTAGTACATGGCAGAATATTGCTGTGTACAAGAATGAGTGCGA GAGCTGTGCATACTGTAGTCAAATATGACATGTGTTTGTATATATTGGTT TTTCTGGGATGGGCTACTGTTTGTTGAAAGCGTCGGGTTGGTCTCCTCTG CAAGACTTTTAAAATTTTTGTATGCTCTGTACATCCTGCTCAAACTTGGG TGCCTATAACACTGACCTCGTGGGGTATGATTGTCTTGTTGTTTCAGGGG TGCGTTATCATATTCTTCAGTAACTTCCTGGGCTTGCTTATCAAGGTTAA TGTATCAGAGGAGGACAATATTTCGCAGAAGATCTTTGGTGTCCTCCTTA TCATTGTCAACATAGGATTGCTATTCGCCATCTGGGGAACTACATATTAT GGTGCACAGCAG
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Coding sequence (CDS) from alignment at C-tenellus_contig8280:1982..4993-

>mRNA_C-tenellus_contig8280.3.1 ID=mRNA_C-tenellus_contig8280.3.1|Name=mRNA_C-tenellus_contig8280.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=801bp|location=Sequence derived from alignment at C-tenellus_contig8280:1982..4993- (Choristocarpus tenellus KU2346)
ATGGTGGTTTGCTCCTTTTTTTTTCAGGTGTTCAGTTCCGTCTCCACCAC
CGTGTTCCAGACTTTTGCCTGTGAGCACTTTGAAGAGTTCAATGCAAGGT
ACCTGAGGGCTGATTATAGCATCATGTGTGACACTCAGGAGCATGGCTTC
TACAAGGCCTATGCTGGCATCATGATCCTGGTATACCCGATAGGTATTCC
ACTCCTGTACTTTGTGATCCTATGGAGACATCGGACAAAGCTAGATCCCA
AGGCGGAGAGCACTATCCTTGAGAGCGCTGCTCCTGAGAGACGTGAAGCG
CTGGGGAAGAATATGAATGAGAGGGAGCTGTGGCAACAAAGGAAACAGCT
AGAGCAGATGACAGAATGGGAGTTGAAGGAGAGGGTGCGGAGGCGGGGAT
ATGACCCAGAATTGACCCCCACGTTGTTCCTGTGGAAAGACTTTGGTCCC
AACCTCTATTACTATGAGGTGGTTGAGTGTGGAAGGAGGATTCTTCTCAC
TGGAGCACTGATCTTTATTGAGCCACAGTCAGCTGCTCAGGCTGCCACAG
CCTGCATATTTGCTTTTCTGAGCCTGCTTGGCTTTGAGTTGCTCCGTCCA
CACCTGGACGAGGGGGACTCGTGGTTGTACCGTTTGGGGTGCGTTATCAT
ATTCTTCAGTAACTTCCTGGGCTTGCTTATCAAGGTTAATGTATCAGAGG
AGGACAATATTTCGCAGAAGATCTTTGGTGTCCTCCTTATCATTGTCAAC
ATAGGATTGCTATTCGCCATCTGGGGAACTACATATTATGGTGCACAGCA
G
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