mRNA_C-tenellus_contig8280.3.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig8280.3.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE) HSP 1 Score: 266 bits (681), Expect = 1.820e-78 Identity = 143/268 (53.36%), Postives = 188/268 (70.15%), Query Frame = 1 Query: 22 FQVFSSVSTTVFQTFACEHFEEFNARYLRADYSIMCDTQEHGFYKAYAGIMILVYPIGIPLLYFVILWRHRTKLDPK-----AESTILESAAPER-REALGKNMNEREL--WQQRKQLEQMTEWELKERVRRRGYDPELTPTLFLWKDFGPNLYYYEVVECGRRILLTGALIFIEPQSAAQAATACIFAFLSLLGFELLRPHLDEGDSWLYRLGCVIIFFSNFLGLLIKVNVSEEDNISQKIFGVLLIIVNIGLLFAIWGTTYYGAQQ 801 F VF+S ST VF+TFAC+ YLRADYS+ C+T H +YK YAG+MI+VYPIGIPLLY ILW +R L+P+ + + E+ P + +A G ++ R+ + + + T EL+ER+++R +P+L P++FLWKDF P++YYYEV+ECGRRILLTGALIFI P +AAQAA AC+FAF SLLGFELLRPHLD DSWLYRLGCV IF SNFL LL KV+ + E N + I G +LI VN+ L+ A+ +T++ QQ Sbjct: 732 FLVFTSTSTVVFKTFACDDEAVEGESYLRADYSLSCNTATHTWYKVYAGVMIVVYPIGIPLLYAFILWINRESLNPRPRPKATDDDVDETTVPAQDADASGWSVASRKAGGXXXGEYVSKETPEELEERLQKRRQNPDLVPSMFLWKDFDPDMYYYEVIECGRRILLTGALIFIAPHTAAQAAMACMFAFASLLGFELLRPHLDPADSWLYRLGCVTIFLSNFLALLTKVDAAGESN--RSILGGILIAVNVLLVVAVLASTWFATQQ 997
BLAST of mRNA_C-tenellus_contig8280.3.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI) HSP 1 Score: 267 bits (683), Expect = 3.440e-78 Identity = 144/263 (54.75%), Postives = 183/263 (69.58%), Query Frame = 1 Query: 22 FQVFSSVSTTVFQTFACEHFEEFNARYLRADYSIMCDTQEHGFYKAYAGIMILVYPIGIPLLYFVILWRHRTKLDPKAE-STILESAAPERREALGKNMNE--RELWQQRKQLEQMTEWELKERVRRRGYDPELTPTLFLWKDFGPNLYYYEVVECGRRILLTGALIFIEPQSAAQAATACIFAFLSLLGFELLRPHLDEGDSWLYRLGCVIIFFSNFLGLLIKVNVSEEDNISQKIFGVLLIIVNIGLLFAIWGTTYYGAQQ 801 F VF+S ST VF+TFAC+ +LRADY I C T +H +Y+ YAG+MI VYPIGIPLLY ILWR+R L+P+A ST LE L M+E RE TE EL++R+ +R +P+L P++FLWKDFGP++YYYEV+ECGRRILLTGALIFI P + AQAA AC+FAF SLLGFELLRPHLD DSWLYRLGCV+IF SNFL LLIK + + E S+ + G +++ +NI L+ A+ +T++ QQ Sbjct: 1303 FLVFTSSSTIVFKTFACDDEAVEGESFLRADYGISCKTNKHAWYEVYAGVMIAVYPIGIPLLYAFILWRNRDSLNPRAYYSTGLE---------LDGEMSEGPRE-----------TEEELQDRLEKRRQNPDLVPSMFLWKDFGPDMYYYEVIECGRRILLTGALIFIAPHTVAQAAIACMFAFASLLGFELLRPHLDPADSWLYRLGCVVIFLSNFLALLIKADTAGEG--SRSVLGGIMVAINIFLILAVLFSTWFATQQ 1543
BLAST of mRNA_C-tenellus_contig8280.3.1 vs. uniprot
Match: D7FRH1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH1_ECTSI) HSP 1 Score: 256 bits (655), Expect = 1.240e-74 Identity = 139/261 (53.26%), Postives = 177/261 (67.82%), Query Frame = 1 Query: 22 FQVFSSVSTTVFQTFACEHFEEFNARYLRADYSIMCDTQEHGFYKAYAGIMILVYPIGIPLLYFVILWRHRTKLDPKAESTILESAAPERREALGKNMNERELWQQRKQLEQMTEWE-LKERVRRRGYDPELTPTLFLWKDFGPNLYYYEVVECGRRILLTGALIFIEPQSAAQAATACIFAFLSLLGFELLRPHLDEGDSWLYRLGCVIIFFSNFLGLLIKVNVSEEDNISQKIFGVLLIIVNIGLLFAIWGTTYYGAQQ 801 F VF+S ST F+TF C+ YLRADYS+ C T +H +Y+ YAGIMI+VYPIGIPLLY ILW +R L+P+ S A P+ A+ K ++ L + L+ER+ +R +P+L P++FLWKDFGP++YYYEV+ECGRRILLTG LIF +AAQAA ACIFAF+SLLGFELLRPHLD D WLYRLGCVIIF SNFL LLIKV+ + E N + G +LI VN+ L+ A+ T+++ QQ Sbjct: 906 FLVFTSASTMAFKTFPCDDEAVEGESYLRADYSLSCKTDKHMYYRIYAGIMIVVYPIGIPLLYAFILWINRDSLNPRVRS----EAIPQPTGAVEKKVS----------LVPANYGDGLQERLDQRRRNPDLVPSMFLWKDFGPDMYYYEVIECGRRILLTGVLIFFAAGTAAQAAMACIFAFVSLLGFELLRPHLDPADMWLYRLGCVIIFLSNFLALLIKVDAAGEGN--RAALGGILIAVNVFLILAVLSTSWFATQQ 1150
BLAST of mRNA_C-tenellus_contig8280.3.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE) HSP 1 Score: 256 bits (655), Expect = 1.990e-74 Identity = 139/263 (52.85%), Postives = 178/263 (67.68%), Query Frame = 1 Query: 22 FQVFSSVSTTVFQTFACEHFEEFNARYLRADYSIMCDTQEHGFYKAYAGIMILVYPIGIPLLYFVILWRHRTKLDPK--AESTILESAAPERREAL-GKNMNERELWQQRKQLEQMTEWELKERVRRRGYDPELTPTLFLWKDFGPNLYYYEVVECGRRILLTGALIFIEPQSAAQAATACIFAFLSLLGFELLRPHLDEGDSWLYRLGCVIIFFSNFLGLLIKVNVSEEDNISQKIFGVLLIIVNIGLLFAIWGTTYYGAQQ 801 F VF+S ST F+TF C+ YLRADYS+ C T +H +++ YAGIMILVYPIGIPLLY ILW +R L+P+ +E+T + E AL N + +L+ER+ +R +P+L P++FLWKDFGP++YYYEV+ECGRRILLTG LIF +AAQAA ACIFAF+SLLGFELLRPHLD D+WLYRLGCVIIF SNFL LLIKV+ + E N + G +LI VN+ L+ A+ T+++ QQ Sbjct: 1248 FLVFTSTSTMAFKTFPCDDEAVEGESYLRADYSLSCKTDKHMYFRIYAGIMILVYPIGIPLLYAFILWINRESLNPRVRSEATPQPTGGVEMDVALVPANYGD----------------DLEERLEQRRNNPDLVPSMFLWKDFGPDMYYYEVIECGRRILLTGVLIFFAAGTAAQAAMACIFAFVSLLGFELLRPHLDPADAWLYRLGCVIIFLSNFLALLIKVDAAGEGN--RAALGGILIAVNVFLILAVLSTSWFATQQ 1492
BLAST of mRNA_C-tenellus_contig8280.3.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI) HSP 1 Score: 255 bits (652), Expect = 4.960e-74 Identity = 130/261 (49.81%), Postives = 175/261 (67.05%), Query Frame = 1 Query: 22 FQVFSSVSTTVFQTFACEHFEEFNARYLRADYSIMCDTQEHGFYKAYAGIMILVYPIGIPLLYFVILWRHRTKLDPKAES-TILESAAPERREALGKNMNERELWQQRKQLEQMTEWELKERVRRRGYDPELTPTLFLWKDFGPNLYYYEVVECGRRILLTGALIFIEPQSAAQAATACIFAFLSLLGFELLRPHLDEGDSWLYRLGCVIIFFSNFLGLLIKVNVSEEDNISQKIFGVLLIIVNIGLLFAIWGTTYYGAQQ 801 F VF + ST F+TFAC+ YLRADYSI C T +H +YK YAG+MI+VYP+GIPLLY ILW++R L+P+ ++ ++ A + + N +L +E++ +R +P+L P++FLWKDFGP +YYYEVVECGRRILLTG L+FI P +AAQ A AC+FAF+SLLGFELLRPHLD DSWLYRLGC+ IF SNFL LLIKV+ + N +FG ++I +N+ L+ A+ +++ QQ Sbjct: 1220 FLVFIATSTMAFKTFACDDEAVEGKSYLRADYSIQCHTDKHEWYKVYAGVMIMVYPVGIPLLYAFILWQNRESLNPRVKTGAVVNPRADGSTDRITYKANSEDL---------------EEKLEKRRRNPDLIPSMFLWKDFGPEIYYYEVVECGRRILLTGVLVFISPNTAAQVAAACMFAFVSLLGFELLRPHLDPVDSWLYRLGCLCIFLSNFLALLIKVDSGVDGN--HDVFGAIMIGINMFLIMAVLLASWFSMQQ 1463
BLAST of mRNA_C-tenellus_contig8280.3.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI) HSP 1 Score: 227 bits (579), Expect = 3.100e-64 Identity = 127/264 (48.11%), Postives = 169/264 (64.02%), Query Frame = 1 Query: 22 FQVFSSVSTTVFQTFACEHFEEFNARYLRADYSIMCDTQEHGFYKAYAGIMILVYPIGIPLLYFVILWRHRTKLDPKAE-STILESAAPERREALG---KNMNERELWQQRKQLEQMTEWELKERVRRRGYDPELTPTLFLWKDFGPNLYYYEVVECGRRILLTGALIFIEPQSAAQAATACIFAFLSLLGFELLRPHLDEGDSWLYRLGCVIIFFSNFLGLLIKVNVSEEDNISQKIFGVLLIIVNIGLLFAIWGTTYYGAQQ 801 F VF + ST F+TFAC+ YL ADY I C T +H +YK YAGIMIL L+P AE ST+++S+A ER+ K M+E +L+E++ +R +P+L P++FLWKDFGP++YYYEVVECGRRILLTG LIFI P +AAQ A AC+FAF+SLLGFELLRPHLD DSWLYRLGC+ IF SNFL LLIKV+ + + N + +FG ++I++N+ L+ A+ +++ QQ Sbjct: 1227 FLVFIATSTMAFKTFACDDEAVEGESYLGADYGIQCHTDKHTWYKVYAGIMIL-------------------SLNPPAEASTLVDSSADERKTNKAYKPKFMSE----------------DLEEKLEKRRRNPDLVPSMFLWKDFGPDMYYYEVVECGRRILLTGVLIFISPNTAAQVAAACMFAFVSLLGFELLRPHLDPVDSWLYRLGCMCIFLSNFLALLIKVDSAGDSN--RDVFGWIMIVINLLLIMAVLLASWFSMQQ 1453
BLAST of mRNA_C-tenellus_contig8280.3.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE) HSP 1 Score: 216 bits (550), Expect = 2.480e-60 Identity = 111/257 (43.19%), Postives = 152/257 (59.14%), Query Frame = 1 Query: 28 VFSSVSTTVFQTFACEHFEEFNARYLRADYSIMCDTQEHGFYKAYAGIMILVYPIGIPLLYFVILWRHRTKLDPKAESTILESAAPERREALGKNMNERELWQQRKQLEQMTEWELKERVRRRGYDPELTPTLFLWKDFGPNLYYYEVVECGRRILLTGALIFIEPQSAAQAATACIFAFLSLLGFELLRPHLDEGDSWLYRLGCVIIFFSNFLGLLIKVNVSEEDNISQKIFGVLLIIVNIGLLFAIWGTTYYGAQ 798 V+S VST VFQ FACE F E +LRAD+ I CDT +H YK YA +MI +YP+GIP ++ L R R++++P + + + R+ + + MN+R D + PT FLW + PN YYYEV EC RR+LLTG L+F+ P + Q A C+FAFLSLL FELLRPH D D LYR GC++IFF+NFL L+IK NV+ D+ ++ V+LIIVN+ +I+ T+ A+ Sbjct: 1632 VYSQVSTVVFQAFACEDFPEIGKSFLRADFRIECDTPKHDNYKIYAAVMICIYPLGIPAAFWYFLRRQRSRINPPTDKGLKDQRG--RKHVVEEKMNQRRT------------------------DRAIAPTSFLWNAYYPNRYYYEVFECMRRLLLTGLLVFVVPDTPGQVAFGCVFAFLSLLAFELLRPHTDHLDMQLYRTGCLVIFFTNFLALMIKANVANPDSRGSAVYSVVLIIVNVLFFLSIFWNTWAAAK 1862
BLAST of mRNA_C-tenellus_contig8280.3.1 vs. uniprot
Match: A0A6H5K4A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A5_9PHAE) HSP 1 Score: 214 bits (544), Expect = 1.550e-59 Identity = 109/249 (43.78%), Postives = 150/249 (60.24%), Query Frame = 1 Query: 28 VFSSVSTTVFQTFACEHFEEFNARYLRADYSIMCDTQEHGFYKAYAGIMILVYPIGIPLLYFVILWRHRTKLDPKAESTILESAAPERREALGKNMNERELWQQRKQLEQMTEWELKERVRRRGYDPELTPTLFLWKDFGPNLYYYEVVECGRRILLTGALIFIEPQSAAQAATACIFAFLSLLGFELLRPHLDEGDSWLYRLGCVIIFFSNFLGLLIKVNVSEEDNISQKIFGVLLIIVNIGLLFAIW 774 V++ +ST VFQTFACEH E RYLRAD+ I CDTQ H YKAYAG+M+ +YP+GIP ++ L R R++++P + EAL K R + +++ + R D + PT FLW + P YYYEV EC RR+LLTG L+F+ P + Q A +CIFA LSL+ FELLRPH++ D LYR GC++I F+NFL L+IK +++D+ + V L+IVNI +IW Sbjct: 1437 VYTQISTVVFQTFACEHLPEIGKRYLRADFGIECDTQRHTLYKAYAGVMMCIYPLGIPAVFLYFLLRQRSRINPPTD------------EALKKRRGGRHVVERKMTV--------------RDKDQSIAPTSFLWNAYFPKCYYYEVFECIRRLLLTGILVFLVPDTPGQVAFSCIFAILSLMVFELLRPHVNHIDRQLYRTGCLVILFTNFLALVIKSGAADKDSSGSAAYSVALVIVNIMFFLSIW 1659
BLAST of mRNA_C-tenellus_contig8280.3.1 vs. uniprot
Match: D8LTT7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT7_ECTSI) HSP 1 Score: 213 bits (542), Expect = 2.920e-59 Identity = 130/348 (37.36%), Postives = 182/348 (52.30%), Query Frame = 1 Query: 22 FQVFSSVSTTVFQTFACEHFEEFNARYLRADYSIMCDTQEHGFYKAYAGIMILVYPIGIPLLYFVILWRHRTKLDPKAESTILESAA-----------PERRE-------------------ALGKNMNERELWQ--------------------------------QRKQLEQMTEW--------------------------ELKERVRRRGYDPELTPTLFLWKDFGPNLYYYEVVECGRRILLTGALIFIEPQSAAQAATACIFAFLSLLGFELLRPHLDEGDSWLYRLGCVIIFFSNFLGLLIKVNVSEEDNISQKIFGVLLIIVNIGLLFAIWGTTYYGAQQ 801 F VFSSVST VF T++C++ E+ LRADYSI CD +H FY+AYA +MIL+YPIG+P+L+ V+L + R K++P ++ L +A R E A G++ + EL +R+ L + + +E + R DP+L T FLW+ + P+ YYYE VECGRR LLTGAL+F+ P +A QAA A +FAF+ LLGFELLRPHL D+W+YR+GC+ IFFSNFLGL+ K +VS+E+ SQ+ +G+LLI V++ ++ AI Y QQ Sbjct: 1323 FLVFSSVSTAVFSTYSCDYLEDLGVSLLRADYSISCDHPDHTFYEAYAALMILLYPIGVPMLFAVLLLKRREKINPPTQTLDLAAATGPVLMERVSSDTARMENEGSGHPGAAAATPRATPTARGRDSGDIELAGMKDTSRGARRGSAVSVASEGDSQYHRRCSGEGERRPLSNGSSGXXXXXXXXXXXXXXXXXXXXXXGLVQDREEVLENRAQDPDLQSTRFLWEPYEPDNYYYETVECGRRCLLTGALVFVLPNTAGQAAGASVFAFVGLLGFELLRPHLSHTDAWMYRIGCITIFFSNFLGLMAKADVSDEEAQSQEAYGLLLIAVHVLMVLAILAQAYVSMQQ 1670
BLAST of mRNA_C-tenellus_contig8280.3.1 vs. uniprot
Match: D7G119_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G119_ECTSI) HSP 1 Score: 211 bits (536), Expect = 1.810e-58 Identity = 108/249 (43.37%), Postives = 149/249 (59.84%), Query Frame = 1 Query: 28 VFSSVSTTVFQTFACEHFEEFNARYLRADYSIMCDTQEHGFYKAYAGIMILVYPIGIPLLYFVILWRHRTKLDPKAESTILESAAPERREALGKNMNERELWQQRKQLEQMTEWELKERVRRRGYDPELTPTLFLWKDFGPNLYYYEVVECGRRILLTGALIFIEPQSAAQAATACIFAFLSLLGFELLRPHLDEGDSWLYRLGCVIIFFSNFLGLLIKVNVSEEDNISQKIFGVLLIIVNIGLLFAIW 774 V++ +ST VFQTF+CE E YLRAD+ I CDTQ H YKAYAG+MI +YP+GIP ++F L R R++++P + EAL K R + +Q+ + R D + PT FLW + P YYYEV EC RR+LLTG L+F+ P + Q A +CIFA +SL+ FELLRPH++ D LYR GC++I F+NFL L+IK +++D+ + V L+IVNI +IW Sbjct: 1204 VYTQISTVVFQTFSCEDLPEIGKSYLRADFRIECDTQRHTLYKAYAGVMICIYPLGIPAIFFYFLVRQRSRINPPTD------------EALKKRRGGRHVAEQKMTV--------------RDQDQSIAPTSFLWSAYFPTCYYYEVFECIRRLLLTGILVFLVPDTPGQVAFSCIFAIVSLMVFELLRPHVNNLDRQLYRTGCLVILFTNFLALVIKSGAADKDSSGSAAYSVALVIVNIMFFLSIW 1426 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8280.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig8280.3.1 >prot_C-tenellus_contig8280.3.1 ID=prot_C-tenellus_contig8280.3.1|Name=mRNA_C-tenellus_contig8280.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=267bp MVVCSFFFQVFSSVSTTVFQTFACEHFEEFNARYLRADYSIMCDTQEHGFback to top mRNA from alignment at C-tenellus_contig8280:1982..4993- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig8280.3.1 ID=mRNA_C-tenellus_contig8280.3.1|Name=mRNA_C-tenellus_contig8280.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3012bp|location=Sequence derived from alignment at C-tenellus_contig8280:1982..4993- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig8280:1982..4993- >mRNA_C-tenellus_contig8280.3.1 ID=mRNA_C-tenellus_contig8280.3.1|Name=mRNA_C-tenellus_contig8280.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=801bp|location=Sequence derived from alignment at C-tenellus_contig8280:1982..4993- (Choristocarpus tenellus KU2346)back to top |