mRNA_C-tenellus_contig8270.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8270.1.1
Unique NamemRNA_C-tenellus_contig8270.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8270.1.1 vs. uniprot
Match: D7FS81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS81_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 5.470e-40
Identity = 135/401 (33.67%), Postives = 185/401 (46.13%), Query Frame = 1 
Query:  466 RVFAHYVLGRLAFLFFVCHPGTLATFSDSQTYLKNRYPNRDLVTTEGQVEQ-RRHITPRSSEDFAMRTGVPDSVLN---GDMTSWVPDWAPSLETRFHNRVKAWLMGYRSSPDHISQLPGLAFISPASTVRTIHACACTASDRQSHRWNTLSH--LEAIPKAARGQHHPAFVYSSGRQSSALHMLLGLDSVGARFR----------GRQASSKMSG-----SGLTGSAATQLPVVTD----GTP--------AQEPD---------------------------PASSIYSQLQQ----QGSISSSSTSLGG----NLFSSLMGSAADMYDMTMNYVGCAIVTSSFGKRYLNSVED--ETYKTVPASAIRSGAVMGADPYDLVGFSNIDPFEASRRRSSGN 1458
            RVF HYVLG++  LFF+CHPGTLAT  D Q YL+NRY NRDLV TE ++E  RRH   R   +FAMR GVP+ +L    G   ++ PDWAP+LE RFH+ V AWL    S+ D            PA+T    H  A + ++  S          + A+  A RG       ++ GR +          ++ AR R            +  S+ SG     S   GSA     +++     G P        A E D                            A++ Y+  +     +  ++ +  S GG    ++ S+ +G AAD YD  +++VGCA+VTS  GKRYL+   D   T  T+  +      +     YDLVGFSNIDPFEAS R   GN
Sbjct:    8 RVFIHYVLGKMLMLFFLCHPGTLAT-CDGQAYLRNRYANRDLVKTESELEDHRRHYKRRDVSEFAMRVGVPEEILQSKAGVDDNYTPDWAPTLEQRFHSTVVAWLRKGGSTADQDK---------PATTTGATHTNAGSTANTASXXXXXXXXXXMAAVRVATRGMAFVPTPHTRGRVTGVHRRASTSGALTARQRWVSPLAEVGSNPRRCSECSGCRRLRSARRGSAGNPQMLLSRFRGRGFPLRRGIFGGASEADGXXXXXXXXXXXXXXXEDCVQDEIRDQAAATTYNSAETLEGPERPLTGNGDSGGGGSRSSVLSTFLGGAADAYDSALDFVGCALVTSPLGKRYLSGASDGYNTVSTIRRTGGGPADMNSGSAYDLVGFSNIDPFEASGRGGGGN 398
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BLAST of mRNA_C-tenellus_contig8270.1.1 vs. uniprot
Match: A0A836CPJ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPJ6_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 7.360e-10
Identity = 96/360 (26.67%), Postives = 137/360 (38.06%), Query Frame = 1 
Query:  466 RVFAHYVLGRLAFL---FFVCHPGTLATFSDSQTYLKNRYPNRDLVTTEGQVEQRRHITPRSSEDFAMRTGVPDSVLNGD----MTSWVPDWAPSLETRFHNRVKAWLMGYRSSP-----DHISQLPGLAFIS---PASTVRTI----HACACTASDRQSHRWNTLSHLEAIPKAARGQHHPAFVYSSGRQSSALHMLLGLDSVGARFRGRQASSKMSGSGLTGSAATQ-LPVVTDGTPAQEPDPASSIYSQLQQQGSISSSSTSLGGNLFSSLMGSAADMYDMTMNYVGCAIVTSSFGKRYLNSVEDE-TYK-----------------TVPASAI---RSGAVMGADPYDLVGFSNID 1422
            R+FAHYVLGRL FL   FF+CHPGT+ATF+  + YL +RYPNR+L     +                         LNGD    +      W      R  +R  A      SSP      H  ++  LAF++   P   +R      HA     S R    W        +  + R     +F  ++G   S        D+ G       +SS+    G+TG+ +   L  +T G    +                +S +   LGG     + G A D +D   + +GCA+VT    K  L   +    Y                  T+PASA+   R+ A      YDLVGF ++D
Sbjct:   19 RIFAHYVLGRLGFLALLFFLCHPGTMATFN-GKDYLTHRYPNRELAVAASEAR-----------------------LNGDTRRALRKCAVPWNIEQAARAASRAGA---ASSSSPAASKAKHQIEIASLAFVAAPRPTGFMRRARSFSHAQPFAQSSRSHRAWPANGPTMLLKWSPRPS--DSFSATNGAPGSQTQSTAPFDTTG------DSSSRR---GMTGAMSVPALSAITAGNAGGDDR--------------VSRARRLLGG-----IAGGAQDAFDTAASAIGCALVTHPLAKHLLTDDDGAGAYGGFQRSSRRRGRGTPGNLTLPASAVAHRRTPASTRVTSYDLVGFMDVD 321
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BLAST of mRNA_C-tenellus_contig8270.1.1 vs. uniprot
Match: A0A836CID3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CID3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.170e-6
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:  445 RKRGNHLRVFAHYVLGRLAFL---FFVCHPGTLATFSDSQTYLKNRYPNRDLVTT 600
            R+ G   R+FAHYVLG+L FL   FF+CHPG+ ATF  S+ YL  RYPN  L+ T
Sbjct:    2 RQHGGFKRIFAHYVLGKLGFLGILFFLCHPGSQATFC-SKDYLSQRYPNLKLLAT 55
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8270.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FS81_ECTSI5.470e-4033.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CPJ6_9STRA7.360e-1026.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CID3_9STRA3.170e-656.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8270contigC-tenellus_contig8270:1895..5156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2691
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_000890.1
Cds size1050
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790092.402511-UTR-C-tenellus_contig8270:1894..23201680790092.402511-UTR-C-tenellus_contig8270:1894..2320Choristocarpus tenellus KU2346UTRC-tenellus_contig8270 1895..2320 +
1680790092.466546-UTR-C-tenellus_contig8270:3941..51561680790092.466546-UTR-C-tenellus_contig8270:3941..5156Choristocarpus tenellus KU2346UTRC-tenellus_contig8270 3942..5156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790092.4138944-CDS-C-tenellus_contig8270:2320..23441680790092.4138944-CDS-C-tenellus_contig8270:2320..2344Choristocarpus tenellus KU2346CDSC-tenellus_contig8270 2321..2344 +
1680790092.4301007-CDS-C-tenellus_contig8270:2754..29161680790092.4301007-CDS-C-tenellus_contig8270:2754..2916Choristocarpus tenellus KU2346CDSC-tenellus_contig8270 2755..2916 +
1680790092.4514322-CDS-C-tenellus_contig8270:3077..39411680790092.4514322-CDS-C-tenellus_contig8270:3077..3941Choristocarpus tenellus KU2346CDSC-tenellus_contig8270 3078..3941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8270.1.1prot_C-tenellus_contig8270.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8270 2321..3941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8270.1.1

>prot_C-tenellus_contig8270.1.1 ID=prot_C-tenellus_contig8270.1.1|Name=mRNA_C-tenellus_contig8270.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=350bp
MGGQYGRKRGNHLRVFAHYVLGRLAFLFFVCHPGTLATFSDSQTYLKNRY
PNRDLVTTEGQVEQRRHITPRSSEDFAMRTGVPDSVLNGDMTSWVPDWAP
SLETRFHNRVKAWLMGYRSSPDHISQLPGLAFISPASTVRTIHACACTAS
DRQSHRWNTLSHLEAIPKAARGQHHPAFVYSSGRQSSALHMLLGLDSVGA
RFRGRQASSKMSGSGLTGSAATQLPVVTDGTPAQEPDPASSIYSQLQQQG
SISSSSTSLGGNLFSSLMGSAADMYDMTMNYVGCAIVTSSFGKRYLNSVE
DETYKTVPASAIRSGAVMGADPYDLVGFSNIDPFEASRRRSSGNSGMRM*
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mRNA from alignment at C-tenellus_contig8270:1895..5156+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8270.1.1 ID=mRNA_C-tenellus_contig8270.1.1|Name=mRNA_C-tenellus_contig8270.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3262bp|location=Sequence derived from alignment at C-tenellus_contig8270:1895..5156+ (Choristocarpus tenellus KU2346)
CTTTAGTCATCTTTGTGATTTGGTTCTGTATTTTCATGCATACATACTCG
TAGTGCGTCACTCTCGCGAGTTGGAATCAGGCGCGCGCACTCACATCTTC
AAGGTTGTCGACAGCTGAGAGGACAGACTACACACAATACATCAAAAAGA
CCATTGGCAGAAGGTCAAGACTTGAAGACGGACAAAGAACAATCAGCGGC
AAGTTACTGCGCACTTTTCCACTCATTGCTCCAACCCCCTCTACATCACA
CACACAGAGGTCGTGCAAGTTATTACAGCCTGGACGAATTTTAGGATAAG
TGATATCTGGGTGGTCGACGTTCAAGTTCCATATTTCCTGGTCAGAACGT
GCACCGTTAGCATTGCGCTTTTGCGAGGCGGAGACCGAGAGACTGGGTGC
AGGCTACGTCGCGTAGGAAGGAGTTAATGGGTGGACAATATGGACGGAAG
GCAAGTGAGCTCAGAGAAGGGAGATGAAGGAGACAATTTTTAAAGGTATC
TTATTCTTCGAGCGTGTCAACATTTTGTGAGCGGTGCGGGTAGTGTGGTA
GTAATCAACAAATGACTTAACCATAAATTTCACGTTAATGTCCCGGCAAA
CTGTCAAGGGTATTGCTTTAGGTGGTACTTTCGGTGGGATTTCGTGGTGT
GGGGGGGATTAGTGTAGGTATTGATTTTGTCATTCGTCTTGGTTGATCTC
CCTTGTACCATGAAACCCCTTTTGTAGAAGGTTGTGGCCTCTAATATCTT
TCTGCGATGTAACAGATGGCAGTAGCGGTACCCTAAACAAAACTGAAAGG
TAATCTTTTGTCCTGGTTATAACCATTCACCACTCTACACCACCCTCCTT
GCAAATACAGAGAGGGAATCACCTTAGGGTGTTTGCTCATTACGTTCTGG
GGAGGCTGGCCTTTCTCTTCTTTGTGTGCCATCCAGGGACGCTCGCCACT
TTCTCAGACAGTCAAACTTACCTGAAGAACCGCTATCCGAATCGGGATCT
TGTCACAACGGAGGGGCAGGTGGTGCGTACGATCGTTACCATCTACTGCA
TTAATCGTCTTTTGCTGTTCACTTCTCCAAATTCGACCGGGATACATTTA
TTTATCCTTCTTTCCTCATTCCCCTCCCTTCCTCCTAACCCCTTTCGTGT
GAAAATCCTACGTTACATCCCTGTTGGTTATAGGAACAGCGTCGTCACAT
CACTCCACGCTCCTCAGAGGACTTCGCCATGCGCACGGGTGTACCCGATA
GCGTACTGAACGGTGACATGACCAGCTGGGTACCAGATTGGGCCCCATCT
CTCGAGACACGCTTCCATAACAGGGTGAAGGCTTGGTTGATGGGGTATAG
GAGCTCCCCAGATCATATTAGCCAGCTCCCAGGTCTTGCCTTCATCTCGC
CCGCCTCCACAGTACGCACGATACATGCTTGCGCTTGCACGGCCAGCGAC
CGTCAGAGTCATCGTTGGAACACTTTGTCCCATCTGGAGGCCATTCCCAA
GGCAGCACGTGGCCAACATCATCCAGCCTTTGTCTACTCCAGTGGCCGAC
AGTCCAGTGCCCTGCATATGTTGCTTGGCCTGGACAGTGTAGGTGCACGT
TTTCGTGGAAGGCAGGCCAGCTCAAAAATGTCTGGGAGTGGTTTGACAGG
CTCGGCGGCGACCCAGTTGCCAGTGGTAACTGATGGCACTCCGGCCCAAG
AGCCGGACCCCGCCTCCTCTATCTACTCTCAGCTTCAGCAGCAGGGTAGT
ATTTCCAGTAGCAGTACCAGCCTTGGTGGCAACCTGTTTTCTTCCCTGAT
GGGTAGCGCAGCGGACATGTATGATATGACGATGAATTACGTGGGGTGCG
CAATTGTGACCTCCTCCTTTGGCAAGCGGTACCTCAACTCCGTGGAGGAT
GAGACGTACAAGACTGTGCCTGCGTCAGCAATTCGTAGTGGAGCTGTGAT
GGGTGCTGACCCTTACGACCTAGTTGGTTTTTCCAACATAGATCCTTTTG
AGGCCAGCCGCCGTCGCTCCAGTGGGAACAGTGGAATGCGCATGTAGCTA
AAGAAAAATGTGGAAAGTGTGAAGTGTTTTGATAGTCGTTAAGTGGTTAT
GTCATGCTCTTCGTACACTTCCAATATTGTAAATAGGTTGTGATGGTGTT
TGTGAGGGGTGAACTTAAAAAAGACGGGTTGGTTGCTTTAAAGGGGTTGC
TAGGTATGGAGTTATGATGCTATGTGGTGTCCAGGTGTTGTGGGTGAGGA
ATGAAAGATGGAGGGGGGTGGATTAGTTGATAATGGCTTGCTTTATGTAC
ATCATAGGGCTGTCAGTGGTCTCTCACCTTTCTTTCATACCTTGGTCACA
GTAGGTATGCCCATTCATATGGCATTGCAAGTAGATAAGAAAAGGTGTGC
CTGTGTCTGTTGAGAAATCTTGATCTCAGGCATGTTTTGAAAAGGAGATT
GTAGCTCTCCCATGACACAGCTCACCCATGCTTGCTCTGGAAAGGGGAGA
GAAGTGTAGAGTTGAGAATATTTTATTTTGTGGTTGATGGTGTAACCTCA
CTTTCAAGGATCCTGCTGAATTCCGCATCCTTGTTACATATGTATCTCAG
GAGTGAAGCAGCCCTTCAATGTCGACAGTTCACTAGAATGTGGATGTTGA
TGTGGAGGGTGAAGGTAAAGAGTGATTAAGAACAAGGGTGTTATTTTGTT
GTTTAGCATGGTGTGGGTCTTTTGCTGTAGTGCATGCATTGTACATAGTC
CCATTATGAGACTATGTGAGAGTGACAAATGATAAGGTGTGAGGGATTTA
GGAGAGGTCAGTGAGGTATGTGCAGACTCTACAAGTCCCGTATTGAATTT
CTTGTGATAGAGCAGGTCAAAGTGGAATAGAAGTTGAATTAGGGAGTGGG
GAGGAGTTCTGGACAACTGGGTTTGGCTTTGGGGGTACAATAAGCCATTT
CTCCTTAACCTCAGTTTCCTACCCTTGGTTCCCATGATACGTAAGGGTGA
AAGCACAGATTGTGATTGTTGTAGTATTATAATTTTCTTAGCATATTGAT
TGCAAGGTGCTTAAGTGTTCAGTTGTACTTGTTTATGTGCAGCAGCAGAG
TTGTAGTCATTGTGCATGGGTTACCATTCCAATCTTGACTTATCCCCTGC
TGCTCCCCTCCCCACTCTTTGACCCCCTACACACAGTTGTGCAAAATGGT
TGAGGGAAATTAGTAAAGGGGTTCAAAACACAGTAGTTGTGTGGGGGCAT
GAGAGTGGTTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig8270:1895..5156+

>mRNA_C-tenellus_contig8270.1.1 ID=mRNA_C-tenellus_contig8270.1.1|Name=mRNA_C-tenellus_contig8270.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1050bp|location=Sequence derived from alignment at C-tenellus_contig8270:1895..5156+ (Choristocarpus tenellus KU2346)
ATGGGTGGACAATATGGACGGAAGAGAGGGAATCACCTTAGGGTGTTTGC
TCATTACGTTCTGGGGAGGCTGGCCTTTCTCTTCTTTGTGTGCCATCCAG
GGACGCTCGCCACTTTCTCAGACAGTCAAACTTACCTGAAGAACCGCTAT
CCGAATCGGGATCTTGTCACAACGGAGGGGCAGGTGGAACAGCGTCGTCA
CATCACTCCACGCTCCTCAGAGGACTTCGCCATGCGCACGGGTGTACCCG
ATAGCGTACTGAACGGTGACATGACCAGCTGGGTACCAGATTGGGCCCCA
TCTCTCGAGACACGCTTCCATAACAGGGTGAAGGCTTGGTTGATGGGGTA
TAGGAGCTCCCCAGATCATATTAGCCAGCTCCCAGGTCTTGCCTTCATCT
CGCCCGCCTCCACAGTACGCACGATACATGCTTGCGCTTGCACGGCCAGC
GACCGTCAGAGTCATCGTTGGAACACTTTGTCCCATCTGGAGGCCATTCC
CAAGGCAGCACGTGGCCAACATCATCCAGCCTTTGTCTACTCCAGTGGCC
GACAGTCCAGTGCCCTGCATATGTTGCTTGGCCTGGACAGTGTAGGTGCA
CGTTTTCGTGGAAGGCAGGCCAGCTCAAAAATGTCTGGGAGTGGTTTGAC
AGGCTCGGCGGCGACCCAGTTGCCAGTGGTAACTGATGGCACTCCGGCCC
AAGAGCCGGACCCCGCCTCCTCTATCTACTCTCAGCTTCAGCAGCAGGGT
AGTATTTCCAGTAGCAGTACCAGCCTTGGTGGCAACCTGTTTTCTTCCCT
GATGGGTAGCGCAGCGGACATGTATGATATGACGATGAATTACGTGGGGT
GCGCAATTGTGACCTCCTCCTTTGGCAAGCGGTACCTCAACTCCGTGGAG
GATGAGACGTACAAGACTGTGCCTGCGTCAGCAATTCGTAGTGGAGCTGT
GATGGGTGCTGACCCTTACGACCTAGTTGGTTTTTCCAACATAGATCCTT
TTGAGGCCAGCCGCCGTCGCTCCAGTGGGAACAGTGGAATGCGCATGTAG
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