prot_C-tenellus_contig8270.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig8270.1.1
Unique Nameprot_C-tenellus_contig8270.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length350
Homology
BLAST of mRNA_C-tenellus_contig8270.1.1 vs. uniprot
Match: D7FS81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS81_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 5.640e-43
Identity = 135/401 (33.67%), Postives = 185/401 (46.13%), Query Frame = 0
Query:   14 RVFAHYVLGRLAFLFFVCHPGTLATFSDSQTYLKNRYPNRDLVTTEGQVEQ-RRHITPRSSEDFAMRTGVPDSVLN---GDMTSWVPDWAPSLETRFHNRVKAWLMGYRSSPDHISQLPGLAFISPASTVRTIHACACTASDRQSHRWNTLSH--LEAIPKAARGQHHPAFVYSSGRQSSALHMLLGLDSVGARFR----------GRQASSKMSG-----SGLTGSAATQLPVVTD----GTP--------AQEPD---------------------------PASSIYSQLQQ----QGSISSSSTSLGG----NLFSSLMGSAADMYDMTMNYVGCAIVTSSFGKRYLNSVED--ETYKTVPASAIRSGAVMGADPYDLVGFSNIDPFEASRRRSSGN 344
            RVF HYVLG++  LFF+CHPGTLAT  D Q YL+NRY NRDLV TE ++E  RRH   R   +FAMR GVP+ +L    G   ++ PDWAP+LE RFH+ V AWL    S+ D            PA+T    H  A + ++  S          + A+  A RG       ++ GR +          ++ AR R            +  S+ SG     S   GSA     +++     G P        A E D                            A++ Y+  +     +  ++ +  S GG    ++ S+ +G AAD YD  +++VGCA+VTS  GKRYL+   D   T  T+  +      +     YDLVGFSNIDPFEAS R   GN
Sbjct:    8 RVFIHYVLGKMLMLFFLCHPGTLAT-CDGQAYLRNRYANRDLVKTESELEDHRRHYKRRDVSEFAMRVGVPEEILQSKAGVDDNYTPDWAPTLEQRFHSTVVAWLRKGGSTADQDK---------PATTTGATHTNAGSTANTASXXXXXXXXXXMAAVRVATRGMAFVPTPHTRGRVTGVHRRASTSGALTARQRWVSPLAEVGSNPRRCSECSGCRRLRSARRGSAGNPQMLLSRFRGRGFPLRRGIFGGASEADGXXXXXXXXXXXXXXXEDCVQDEIRDQAAATTYNSAETLEGPERPLTGNGDSGGGGSRSSVLSTFLGGAADAYDSALDFVGCALVTSPLGKRYLSGASDGYNTVSTIRRTGGGPADMNSGSAYDLVGFSNIDPFEASGRGGGGN 398          
BLAST of mRNA_C-tenellus_contig8270.1.1 vs. uniprot
Match: A0A836CPJ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPJ6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.790e-10
Identity = 96/360 (26.67%), Postives = 137/360 (38.06%), Query Frame = 0
Query:   14 RVFAHYVLGRLAFL---FFVCHPGTLATFSDSQTYLKNRYPNRDLVTTEGQVEQRRHITPRSSEDFAMRTGVPDSVLNGD----MTSWVPDWAPSLETRFHNRVKAWLMGYRSSP-----DHISQLPGLAFIS---PASTVRTI----HACACTASDRQSHRWNTLSHLEAIPKAARGQHHPAFVYSSGRQSSALHMLLGLDSVGARFRGRQASSKMSGSGLTGSAATQ-LPVVTDGTPAQEPDPASSIYSQLQQQGSISSSSTSLGGNLFSSLMGSAADMYDMTMNYVGCAIVTSSFGKRYLNSVEDE-TYK-----------------TVPASAI---RSGAVMGADPYDLVGFSNID 332
            R+FAHYVLGRL FL   FF+CHPGT+ATF+  + YL +RYPNR+L     +                         LNGD    +      W      R  +R  A      SSP      H  ++  LAF++   P   +R      HA     S R    W        +  + R     +F  ++G   S        D+ G       +SS+    G+TG+ +   L  +T G    +                +S +   LGG     + G A D +D   + +GCA+VT    K  L   +    Y                  T+PASA+   R+ A      YDLVGF ++D
Sbjct:   19 RIFAHYVLGRLGFLALLFFLCHPGTMATFN-GKDYLTHRYPNRELAVAASEAR-----------------------LNGDTRRALRKCAVPWNIEQAARAASRAGA---ASSSSPAASKAKHQIEIASLAFVAAPRPTGFMRRARSFSHAQPFAQSSRSHRAWPANGPTMLLKWSPRPS--DSFSATNGAPGSQTQSTAPFDTTG------DSSSRR---GMTGAMSVPALSAITAGNAGGDDR--------------VSRARRLLGG-----IAGGAQDAFDTAASAIGCALVTHPLAKHLLTDDDGAGAYGGFQRSSRRRGRGTPGNLTLPASAVAHRRTPASTRVTSYDLVGFMDVD 321          
BLAST of mRNA_C-tenellus_contig8270.1.1 vs. uniprot
Match: A0A836CID3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CID3_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.190e-7
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 0
Query:    7 RKRGNHLRVFAHYVLGRLAFL---FFVCHPGTLATFSDSQTYLKNRYPNRDLVTT 58
            R+ G   R+FAHYVLG+L FL   FF+CHPG+ ATF  S+ YL  RYPN  L+ T
Sbjct:    2 RQHGGFKRIFAHYVLGKLGFLGILFFLCHPGSQATFC-SKDYLSQRYPNLKLLAT 55          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8270.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FS81_ECTSI5.640e-4333.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CPJ6_9STRA1.790e-1026.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CID3_9STRA5.190e-756.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 220..247
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..39
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 40..349
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..19

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8270contigC-tenellus_contig8270:2321..3941 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8270.1.1mRNA_C-tenellus_contig8270.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig8270 1895..5156 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig8270.1.1 ID=prot_C-tenellus_contig8270.1.1|Name=mRNA_C-tenellus_contig8270.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=350bp
MGGQYGRKRGNHLRVFAHYVLGRLAFLFFVCHPGTLATFSDSQTYLKNRY
PNRDLVTTEGQVEQRRHITPRSSEDFAMRTGVPDSVLNGDMTSWVPDWAP
SLETRFHNRVKAWLMGYRSSPDHISQLPGLAFISPASTVRTIHACACTAS
DRQSHRWNTLSHLEAIPKAARGQHHPAFVYSSGRQSSALHMLLGLDSVGA
RFRGRQASSKMSGSGLTGSAATQLPVVTDGTPAQEPDPASSIYSQLQQQG
SISSSSTSLGGNLFSSLMGSAADMYDMTMNYVGCAIVTSSFGKRYLNSVE
DETYKTVPASAIRSGAVMGADPYDLVGFSNIDPFEASRRRSSGNSGMRM*
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