mRNA_C-tenellus_contig8269.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8269.1.1
Unique NamemRNA_C-tenellus_contig8269.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig8269.1.1 vs. uniprot
Match: A0A6H5K2V5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V5_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.600e-24
Identity = 184/446 (41.26%), Postives = 219/446 (49.10%), Query Frame = 1 
Query:   13 ISASNGGGGLGPPPGLPQSSSTAELVALGLIGSDTADETATVGSSD--YNSDXXXXXXXXXXXXXXXXXXXXXGIGVGTAGGLSVSTSXXXXXXXXXXXXVSKVLGTGSAGGMGLGLKTPSLTNLANMVRSQSVSSFHSETSLFTDP-----ATTTESPAWGS--RNHDVVGG---------------VGGNSSAAVMSSSLGSL-----SGVGGS---GSTGNGLGGVDLSV--FGGRTGLASSSRRVSDEDHGIPSWATAAAAAVAQRRSVGSSALANGAV--PRTAVPPTSGSR------RSLVYNHSDTDLVASFGRLGFGSVGGTPWSPLTSPNSSPMFGASAPLLE-DSLHLGPGQSLDQGASSSGGGLGGGISIPQGSAGGGFDHFTSNTDSPVHRMASGHVHMGIRSGIGGSNNGDSAS-RLPRHASYPSLSRVGGGG 1218
            +SAS   G L PPPGLP+SSSTAELVALG   S   +    + SSD      XXXXXXXXXXXXXXXXXX X G   G  GG +  T   XXXXXX               GMGLGL+  SLTNLANMVRSQSVSSFHSE  +F        +   ESPAWGS   N D +G                +  + S     +  G+L     +G G S   G TG G G  DLS   F GR G A+    V   D G+ +                   +  G+   PR  VP   G        R++V+N SDTDLVASF R GFG  G + WSPL SP +SP+ GA  PLLE D L L   ++  +GA +SGG            AGG      ++T  P     + H   G+  G G +    S   RLPRHASYPSL+   GGG
Sbjct:    8 LSASASSGSLAPPPGLPRSSSTAELVALGFDPSGGMEGGNDLNSSDGGXXXXXXXXXXXXXXXXXXXXXXVXGGHDAGDIGGKNDGTGGTXXXXXX---------------GMGLGLRNHSLTNLANMVRSQSVSSFHSE--IFASGGKPVGSAAVESPAWGSYPANLDKMGSGXXXXXXXXXEDIFTLSPSPSVGPRGAGRGALPMRPPTGGGDSDVVGGTGAGAG-ADLSPQQFAGR-GTAARREVV---DRGMSAXXXXXXXXXXXXXXXXXXXMGGGSSFDPRGIVPSGPGRSGALPGGRAMVHNRSDTDLVASFSRFGFGQGGVSRWSPLMSPTASPLVGA--PLLEEDPLDLELEENASRGAGASGG------------AGGA----AADTFGPPSSFLTSHGRRGLMDGQGAAGEAPSMEVRLPRHASYPSLTVSRGGG 413
[Close]
BLAST of mRNA_C-tenellus_contig8269.1.1 vs. uniprot
Match: D8LNL2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL2_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 4.480e-22
Identity = 160/368 (43.48%), Postives = 190/368 (51.63%), Query Frame = 1 
Query:    1 EMSGISASNGGGGLGPPPGLPQSSSTAELVALGLIGSDTADETATVGSSD-------YNSDXXXXXXXXXXXXXXXXXXXXXGIGVGTAGGLSVSTSXXXXXXXXXXXXVSKVLGTGSAGGMGLGLKTPSLTNLANMVRSQSVSSFHSETSLFTDP-----ATTTESPAWGS--RNHDVVGGVGGNSSAAVMSSSLGSLS---GVGGSGS--------TGNG--------------------LGGVDLSV--FGGRTGLASSSRRVSDEDHGIPSWATAAAAAVAQRRSVG--SSALANGAVP----RTAVPPTSGSRRSLVYNHSDTDLVASFGRLGFGSVGGTPWSPLTSPNSSPMFGASAPLLED 945
            + + +SAS   G L PPPGLP+SSSTAELVALG   S   D    + SSD           XXXXXXXXXXXXXXXXXX   G+  G  GG    T XXXXXXXXX               MGLGL+  SLTNLANMVRSQSVSSFHSE  +F        +T  +SPAWGS   N D +G              + ++S   G  G+G         TG G                      G DLS   F GR G A+    V   D G+ + + A +   +QRR +G  SS    G VP    R+  PP   S R++V+N SDTDLVASF RLGFG  G + WSPL SP +SP+ GA  PLLE+
Sbjct:    2 QAASLSASASSGSLAPPPGLPRSSSTAELVALGFDPSGVMDGGNDLNSSDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGGLDAGDMGGKDDGTXXXXXXXXXX---------------MGLGLRNHSLTNLANMVRSQSVSSFHSE--IFASGGKPVRSTAIDSPAWGSYPANLDKMGSGXXXXXXXXXXEDMFTVSPSMGPRGAGRGTLPMRPPTGGGDRGGVXXXXXXXXXDVXXXXXXGADLSPQQFAGR-GTAARREVV---DRGMSAGSAAGSTRTSQRRPMGGGSSFDPRGMVPSGPGRSGAPP---SGRAMVHNRSDTDLVASFSRLGFGQGGVSRWSPLMSPTASPLVGA--PLLEE 343
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8269.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2V5_9PHAE1.600e-2441.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LNL2_ECTSI4.480e-2243.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8269contigC-tenellus_contig8269:104..2263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1230
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_006710.2
Cds size1227
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790091.9811578-CDS-C-tenellus_contig8269:103..1281680790091.9811578-CDS-C-tenellus_contig8269:103..128Choristocarpus tenellus KU2346CDSC-tenellus_contig8269 104..128 -
1680790091.9934788-CDS-C-tenellus_contig8269:950..12811680790091.9934788-CDS-C-tenellus_contig8269:950..1281Choristocarpus tenellus KU2346CDSC-tenellus_contig8269 951..1281 -
1680790092.003256-CDS-C-tenellus_contig8269:1389..22601680790092.003256-CDS-C-tenellus_contig8269:1389..2260Choristocarpus tenellus KU2346CDSC-tenellus_contig8269 1390..2260 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790092.0132134-UTR-C-tenellus_contig8269:2260..22631680790092.0132134-UTR-C-tenellus_contig8269:2260..2263Choristocarpus tenellus KU2346UTRC-tenellus_contig8269 2261..2263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8269.1.1prot_C-tenellus_contig8269.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8269 104..2260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8269.1.1

>prot_C-tenellus_contig8269.1.1 ID=prot_C-tenellus_contig8269.1.1|Name=mRNA_C-tenellus_contig8269.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=409bp
MSGISASNGGGGLGPPPGLPQSSSTAELVALGLIGSDTADETATVGSSDY
NSDGGGYDPRSPGLPVSSSSGGVVGIGVGTAGGLSVSTSAGLGPATNGGG
GVSKVLGTGSAGGMGLGLKTPSLTNLANMVRSQSVSSFHSETSLFTDPAT
TTESPAWGSRNHDVVGGVGGNSSAAVMSSSLGSLSGVGGSGSTGNGLGGV
DLSVFGGRTGLASSSRRVSDEDHGIPSWATAAAAAVAQRRSVGSSALANG
AVPRTAVPPTSGSRRSLVYNHSDTDLVASFGRLGFGSVGGTPWSPLTSPN
SSPMFGASAPLLEDSLHLGPGQSLDQGASSSGGGLGGGISIPQGSAGGGF
DHFTSNTDSPVHRMASGHVHMGIRSGIGGSNNGDSASRLPRHASYPSLSR
VGGGGGGGY
back to top

mRNA from alignment at C-tenellus_contig8269:104..2263-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8269.1.1 ID=mRNA_C-tenellus_contig8269.1.1|Name=mRNA_C-tenellus_contig8269.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2160bp|location=Sequence derived from alignment at C-tenellus_contig8269:104..2263- (Choristocarpus tenellus KU2346)
GAAATGAGCGGAATTTCGGCATCAAATGGAGGCGGTGGCCTTGGCCCTCC
ACCCGGTTTACCCCAAAGCAGTTCTACCGCGGAGCTTGTGGCGCTTGGTC
TTATTGGTTCGGACACAGCCGATGAAACAGCTACTGTTGGAAGCTCTGAC
TACAATAGCGATGGGGGTGGATATGATCCACGCTCTCCCGGGCTTCCAGT
GAGTTCTAGCAGTGGTGGCGTTGTTGGAATTGGGGTGGGGACGGCGGGAG
GGCTCAGTGTCAGTACAAGTGCTGGGTTGGGTCCAGCTACTAACGGGGGT
GGTGGTGTGTCGAAAGTGTTGGGCACCGGATCTGCGGGAGGAATGGGTCT
TGGACTTAAGACGCCGTCTCTGACAAACCTGGCAAACATGGTTCGCTCCC
AGTCCGTCTCGAGTTTTCATTCGGAGACAAGCCTTTTCACAGACCCTGCA
ACCACCACCGAATCCCCAGCCTGGGGATCCCGCAACCATGACGTGGTGGG
TGGCGTTGGAGGTAATAGCTCTGCAGCGGTCATGTCGTCCTCTCTGGGAA
GCTTATCGGGAGTGGGTGGTAGTGGCAGTACTGGTAATGGGCTCGGTGGA
GTTGACTTATCTGTGTTCGGAGGTAGAACCGGTCTTGCCTCGTCTTCTCG
CAGAGTGAGTGATGAGGATCATGGGATACCCTCCTGGGCGACTGCAGCCG
CAGCAGCGGTTGCGCAACGTCGCTCAGTGGGTTCATCAGCACTTGCCAAT
GGTGCCGTACCCAGAACTGCGGTCCCACCAACAAGCGGAAGCAGGCGGTC
ACTGGTGTACAACCACTCGGATACAGACCTTGTAGCATCATTTGGTCGAC
TGGGCTTTGGTTCAGTGGGTGGTAGTAATGGCGATTCCAGTGGTAGTGGC
ATGGGGGTGGGCAGCCTGGGACGGGCAAGTGGAGGACTTGAGACAGATAA
TACCCTGAGGGGAAATGGTGGACATCCTTCAGCACCTTGGAGCCCCCTCA
CATCTCCAAACTCCAGTCCCATGTTTGGTGCCAGCGCTCCTCTCCTTGAG
GACTCGCTTCATTTAGGGCCGGGACAATCCTTGGACCAAGGGGCTAGCAG
TAGTGGTGGCGGTCTCGGTGGGGGTATTTCAATTCCTCAGGGTTCTGCAG
GTGGGGGTTTCGACCATTTTACTTCCAATACGGACTCACCTGTGCACAGG
ATGGCTTCTGGCCATGTTCACATGGGGATTAGGAGTGGTATTGGTGGCAG
CAACAATGGTGATAGTGCCTCACGTTTGCCACGGCATGCCTCATACCCTT
CTCTTTCGCGCGTGTTTATGAATGAGGAAAGTGTACATGATAATAGAGGT
GTTGATGTTGCAGGAAATGCCAGTGGTAGTGTTAGCGGTGTTGGAGGCAT
GTCGAGGTTTAGAGGAGCAGTAGTTGGAAGCTATGGCGACAGCCCCCTCA
GGGGACCCCTGCAGCACCATGGGCACAGTCCTGTTCAGGAAGGGGGTATG
CGCCACATTAGCCCCACCAAGAGTCAAGGCCAAACCTTGCGAGGCACTGG
TAGTGGAAATGCTGGTAGTAGTGGGGGCAGTGGGTCGGATGGCCAGTCAC
GAGGCATAGGCATCCATGGGACAAGATCTGGTTCATCCCATGCCATCAGC
CACTCAGGTGCAGCTTCTGGGCATGGCCGGGGGCAGCCCACACAGTATCC
CCAGAGTAACAGTGGGGGTGTTGATGGGGTGCTCCTTAATGATGGGCGTT
TTGTCCCTTCGTCAATGATGAGTTCTAATAGCTCCACTGGTGGTGGAAGC
AGTGGTGGGTACAGTGAGGGTGGGTACGGGGGTGACCATGGGGGACAAAA
TGGTCCTAGTGGTGCTGCTGCTGCCTCTGGCTCTGTTGTAGATGTGCCCT
GGGGGTCGTCACAGGATCCAGTGTCATTGTATAATGCGTTGGTCATGAAG
CAGACCATGGCAGCAGCAGCGGTTTCTGGCATGCGTTTCCCTGCAATGAT
CCCTGTGGCTAATGGCATGGGGGTGAGCATGGTTGACATGGCAAGCCTTG
CAGCAGCTGCTCAGGCTGCATCATCAGGGGGTGGAGGTGGTGCAGGTAAC
AGCCACAGTAGCCACCCTAGGGGCTCCTCCTACAGTGGGGGAGGAGGTGG
AGGTGGATAC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig8269:104..2263-

>mRNA_C-tenellus_contig8269.1.1 ID=mRNA_C-tenellus_contig8269.1.1|Name=mRNA_C-tenellus_contig8269.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1227bp|location=Sequence derived from alignment at C-tenellus_contig8269:104..2263- (Choristocarpus tenellus KU2346)
ATGAGCGGAATTTCGGCATCAAATGGAGGCGGTGGCCTTGGCCCTCCACC
CGGTTTACCCCAAAGCAGTTCTACCGCGGAGCTTGTGGCGCTTGGTCTTA
TTGGTTCGGACACAGCCGATGAAACAGCTACTGTTGGAAGCTCTGACTAC
AATAGCGATGGGGGTGGATATGATCCACGCTCTCCCGGGCTTCCAGTGAG
TTCTAGCAGTGGTGGCGTTGTTGGAATTGGGGTGGGGACGGCGGGAGGGC
TCAGTGTCAGTACAAGTGCTGGGTTGGGTCCAGCTACTAACGGGGGTGGT
GGTGTGTCGAAAGTGTTGGGCACCGGATCTGCGGGAGGAATGGGTCTTGG
ACTTAAGACGCCGTCTCTGACAAACCTGGCAAACATGGTTCGCTCCCAGT
CCGTCTCGAGTTTTCATTCGGAGACAAGCCTTTTCACAGACCCTGCAACC
ACCACCGAATCCCCAGCCTGGGGATCCCGCAACCATGACGTGGTGGGTGG
CGTTGGAGGTAATAGCTCTGCAGCGGTCATGTCGTCCTCTCTGGGAAGCT
TATCGGGAGTGGGTGGTAGTGGCAGTACTGGTAATGGGCTCGGTGGAGTT
GACTTATCTGTGTTCGGAGGTAGAACCGGTCTTGCCTCGTCTTCTCGCAG
AGTGAGTGATGAGGATCATGGGATACCCTCCTGGGCGACTGCAGCCGCAG
CAGCGGTTGCGCAACGTCGCTCAGTGGGTTCATCAGCACTTGCCAATGGT
GCCGTACCCAGAACTGCGGTCCCACCAACAAGCGGAAGCAGGCGGTCACT
GGTGTACAACCACTCGGATACAGACCTTGTAGCATCATTTGGTCGACTGG
GCTTTGGTTCAGTGGGTGGTACACCTTGGAGCCCCCTCACATCTCCAAAC
TCCAGTCCCATGTTTGGTGCCAGCGCTCCTCTCCTTGAGGACTCGCTTCA
TTTAGGGCCGGGACAATCCTTGGACCAAGGGGCTAGCAGTAGTGGTGGCG
GTCTCGGTGGGGGTATTTCAATTCCTCAGGGTTCTGCAGGTGGGGGTTTC
GACCATTTTACTTCCAATACGGACTCACCTGTGCACAGGATGGCTTCTGG
CCATGTTCACATGGGGATTAGGAGTGGTATTGGTGGCAGCAACAATGGTG
ATAGTGCCTCACGTTTGCCACGGCATGCCTCATACCCTTCTCTTTCGCGC
GTTGGGGGAGGAGGTGGAGGTGGATAC
back to top