mRNA_C-tenellus_contig8257.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8257.2.1
Unique NamemRNA_C-tenellus_contig8257.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8257.2.1 vs. uniprot
Match: A0A6H5KWD5_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWD5_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.310e-19
Identity = 50/79 (63.29%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:    1 LVGLQNLGNTCFMNACLQCLMNTEVLANFFLVE-SHQTVRL---SRKSPTQGALATAFAELVRCVNCSPIHSSVSPAQV 225
            LVGLQNLGNTCFMNACLQCL++T+ L + F     H+  RL   S  SPT GALA AF ELV  V  SP HS+VSPAQV
Sbjct:  533 LVGLQNLGNTCFMNACLQCLLHTDALVDLFRGRHGHREQRLRSHSTTSPTHGALAQAFGELVAMVEASPAHSNVSPAQV 611
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BLAST of mRNA_C-tenellus_contig8257.2.1 vs. uniprot
Match: D8LJ64_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ64_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.780e-19
Identity = 50/79 (63.29%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:    1 LVGLQNLGNTCFMNACLQCLMNTEVLANFFLVE-SHQTVRL---SRKSPTQGALATAFAELVRCVNCSPIHSSVSPAQV 225
            LVGLQNLGNTCFMNACLQCL++T+ L + F     H   RL   S  SPT GALA AF ELV  V  SP HS+VSPAQV
Sbjct:  320 LVGLQNLGNTCFMNACLQCLLHTDALVDLFRGRYGHSEQRLGSHSSASPTHGALAQAFGELVAIVEASPAHSNVSPAQV 398
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BLAST of mRNA_C-tenellus_contig8257.2.1 vs. uniprot
Match: A0A7S2V666_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V666_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.930e-14
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:    1 LVGLQNLGNTCFMNACLQCLMNTEVLANFFLVESHQTVRLSRKSPTQGALATAFAELVRCVNCSPIHSSVSPAQV 225
            +VGL NLGNTCFMN+CLQCL+NT  LA +FL  ++ +  L R SP +G LA AFA+LV  V+     +SV+P+ +
Sbjct:    1 MVGLTNLGNTCFMNSCLQCLLNTGHLAEWFLQGAYDSA-LCRTSPMRGQLAKAFADLVNQVHSQANRTSVNPSNL 74
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BLAST of mRNA_C-tenellus_contig8257.2.1 vs. uniprot
Match: F0XZK7_AURAN (USP domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZK7_AURAN)

HSP 1 Score: 72.4 bits (176), Expect = 3.330e-13
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:    1 LVGLQNLGNTCFMNACLQCLMNTEVLANFFLVESHQTVRLSRKSPTQGALATAFAELVRCVNCSPIHSSVSPAQV 225
            LVGL NLGNTCF+NA LQCL+    L   FL  S+  + ++  SP++GA+A AFAELVR V  +  HS+VSPA++
Sbjct:    1 LVGLTNLGNTCFLNAPLQCLLGVAPLVEVFLDGSYAAM-VNGASPSKGAIAHAFAELVRDVYAAEPHSAVSPAKL 74
[Close]
BLAST of mRNA_C-tenellus_contig8257.2.1 vs. uniprot
Match: A0A5D6Y508_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y508_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 7.680e-13
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:    1 LVGLQNLGNTCFMNACLQCLMNTEVLANFFLVESHQTVRLSRKSPTQGALATAFAELVRCVNCSPIHSSVSPAQV 225
            LVGLQNLGNTCFMN+CLQC+ N   +A +F    H    ++  SPT+GALA AF +L++ +  S   SSV P+++
Sbjct:  564 LVGLQNLGNTCFMNSCLQCVSNIPSVAQYFASNVHAK-EVNEASPTKGALAFAFGDLMKALWGSDKFSSVRPSEL 637
[Close]
BLAST of mRNA_C-tenellus_contig8257.2.1 vs. uniprot
Match: A0A0L0HQC4_SPIPD (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HQC4_SPIPD)

HSP 1 Score: 71.2 bits (173), Expect = 1.040e-12
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 LVGLQNLGNTCFMNACLQCLMNTEVLANFFLVESHQTVRLSRKSPTQGALATAFAELVRCVNCSPIHSSVSPAQ 222
            LVGLQNLGNTCFMN+ LQC  +TE+L  +FL   ++   ++  SP +G LATAFA LV+ V  S  + S+SP+Q
Sbjct:  440 LVGLQNLGNTCFMNSILQCAFSTELLMGYFLSGDYKG-DINPGSPMKGQLATAFAALVKEVMKSNAYRSISPSQ 512
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BLAST of mRNA_C-tenellus_contig8257.2.1 vs. uniprot
Match: A0A2D4BKC3_PYTIN (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKC3_PYTIN)

HSP 1 Score: 70.1 bits (170), Expect = 2.630e-12
Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:    1 LVGLQNLGNTCFMNACLQCLMNTEVLANFFLVESHQTVRLSRKSPTQGALATAFAELVRCVNCSPIHSSVSPAQV 225
            LVGLQNLGNTCFMN+CLQC+ N   + ++F   ++    ++  SPT+GALA AF +L++ +  SP  ++  P ++
Sbjct:  181 LVGLQNLGNTCFMNSCLQCVSNVPAVVHYFQSGAYLK-EINETSPTKGALAIAFGDLIKALWSSPEFTATRPVEL 254
[Close]
BLAST of mRNA_C-tenellus_contig8257.2.1 vs. uniprot
Match: A0A7S1C8E4_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C8E4_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.470e-11
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    7 GLQNLGNTCFMNACLQCLMNTEVLANFFLVESHQTVRLSRKSPTQGALATAFAELV 174
            GL NLGNTCFMN+CLQC+ NT  L  +FL ++H    ++R+SPT+G LA A+A+LV
Sbjct:    2 GLYNLGNTCFMNSCLQCVSNTPDLTAYFLADAHAR-DVNRRSPTKGRLAAAYADLV 56
[Close]
BLAST of mRNA_C-tenellus_contig8257.2.1 vs. uniprot
Match: A0A067CI15_SAPPC (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CI15_SAPPC)

HSP 1 Score: 67.8 bits (164), Expect = 1.700e-11
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:    1 LVGLQNLGNTCFMNACLQCLMNTEVLANFFLVESHQTVRLSRKSPTQGALATAFAELVRCVNCSPIHSSVSPAQV 225
            LVGLQNLGNTCFMN+CLQCL N  ++  +F +  H    L+  SPTQG LA  F +L + +      SS  P ++
Sbjct:  146 LVGLQNLGNTCFMNSCLQCLSNVPLVMRYFRMGQHLQ-ELNEASPTQGKLACVFGDLTQVLWQQAEFSSTRPVEL 219
[Close]
BLAST of mRNA_C-tenellus_contig8257.2.1 vs. uniprot
Match: D0NHJ1_PHYIT (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NHJ1_PHYIT)

HSP 1 Score: 67.8 bits (164), Expect = 1.710e-11
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:    1 LVGLQNLGNTCFMNACLQCLMNTEVLANFFLVESHQTVRLSRKSPTQGALATAFAELVRCVNCSPIHSSVSPAQV 225
            LVGLQNLGNTCFMN+CLQC+ N   L  +F    +    ++  SPT+GALATAF +L++ +      ++  P ++
Sbjct:  194 LVGLQNLGNTCFMNSCLQCVSNLPALVKYFHPGLYAR-EINDTSPTKGALATAFGDLIKALRTGDKFTATRPVEL 267
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8257.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWD5_9PHAE1.310e-1963.29USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJ64_ECTSI1.780e-1963.29Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ecto... [more]
A0A7S2V666_9STRA4.930e-1452.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
F0XZK7_AURAN3.330e-1353.33USP domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A5D6Y508_9STRA7.680e-1349.33Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pyth... [more]
A0A0L0HQC4_SPIPD1.040e-1252.70Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Spiz... [more]
A0A2D4BKC3_PYTIN2.630e-1244.00Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pyth... [more]
A0A7S1C8E4_9STRA1.470e-1157.14Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A067CI15_SAPPC1.700e-1146.67Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Sapr... [more]
D0NHJ1_PHYIT1.710e-1144.00Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Phyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8257contigC-tenellus_contig8257:5877..6104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LJ64
PFAMsUCH
Model size228
Max annot lvl2759|Eukaryota
KEGG koko:K11833
Hectar predicted targeting categoryother localisation
GOsGO:0002682,GO:0002683,GO:0002697,GO:0002698,GO:0002700,GO:0002701,GO:0002759,GO:0002784,GO:0002785,GO:0002831,GO:0002832,GO:0002920,GO:0002921,GO:0003674,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0006464,GO:0006508,GO:0006807,GO:0007563,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008348,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0010959,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0032101,GO:0032102,GO:0032268,GO:0032270,GO:0032879,GO:0036211,GO:0036459,GO:0042176,GO:0043170,GO:0043269,GO:0043271,GO:0043412,GO:0043900,GO:0043901,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044877,GO:0045088,GO:0045732,GO:0045805,GO:0045824,GO:0045862,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048585,GO:0050776,GO:0050777,GO:0050789,GO:0050793,GO:0050794,GO:0051049,GO:0051051,GO:0051094,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051924,GO:0051926,GO:0060255,GO:0061136,GO:0065007,GO:0070011,GO:0070628,GO:0070646,GO:0070647,GO:0071108,GO:0071704,GO:0080090,GO:0080134,GO:0101005,GO:0140096,GO:1900424,GO:1900425,GO:1901564,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1990380,GO:2000026
Exons1
Evalue2.92e-20
EggNOG OGsKOG1868@1|root,KOG1868@2759|Eukaryota
Ec32 ortholog descriptionPeptidase C19, ubiquitin carboxyl-terminal hydrolase
Ec32 orthologEc-02_004920.1
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
Cds size228
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790091.021645-CDS-C-tenellus_contig8257:5876..61041680790091.021645-CDS-C-tenellus_contig8257:5876..6104Choristocarpus tenellus KU2346CDSC-tenellus_contig8257 5877..6104 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8257.2.1prot_C-tenellus_contig8257.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8257 5877..6104 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8257.2.1

>prot_C-tenellus_contig8257.2.1 ID=prot_C-tenellus_contig8257.2.1|Name=mRNA_C-tenellus_contig8257.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=76bp
LVGLQNLGNTCFMNACLQCLMNTEVLANFFLVESHQTVRLSRKSPTQGAL
ATAFAELVRCVNCSPIHSSVSPAQV*
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mRNA from alignment at C-tenellus_contig8257:5877..6104+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8257.2.1 ID=mRNA_C-tenellus_contig8257.2.1|Name=mRNA_C-tenellus_contig8257.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=228bp|location=Sequence derived from alignment at C-tenellus_contig8257:5877..6104+ (Choristocarpus tenellus KU2346)
TTGGTGGGGCTGCAGAACCTGGGAAATACGTGTTTCATGAATGCCTGCCT
CCAGTGTTTGATGAACACAGAGGTGTTGGCCAATTTTTTCCTTGTTGAAT
CACACCAAACAGTGCGGTTGAGTCGCAAGAGTCCCACCCAGGGTGCTCTC
GCAACTGCGTTTGCAGAGTTGGTCCGGTGTGTGAATTGTTCTCCAATACA
TTCAAGCGTATCTCCAGCACAGGTATGA
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Coding sequence (CDS) from alignment at C-tenellus_contig8257:5877..6104+

>mRNA_C-tenellus_contig8257.2.1 ID=mRNA_C-tenellus_contig8257.2.1|Name=mRNA_C-tenellus_contig8257.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=228bp|location=Sequence derived from alignment at C-tenellus_contig8257:5877..6104+ (Choristocarpus tenellus KU2346)
TTGGTGGGGCTGCAGAACCTGGGAAATACGTGTTTCATGAATGCCTGCCT
CCAGTGTTTGATGAACACAGAGGTGTTGGCCAATTTTTTCCTTGTTGAAT
CACACCAAACAGTGCGGTTGAGTCGCAAGAGTCCCACCCAGGGTGCTCTC
GCAACTGCGTTTGCAGAGTTGGTCCGGTGTGTGAATTGTTCTCCAATACA
TTCAAGCGTATCTCCAGCACAGGTATGA
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