mRNA_C-tenellus_contig8208.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8208.1.1
Unique NamemRNA_C-tenellus_contig8208.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8208.1.1 vs. uniprot
Match: D0MUD0_PHYIT (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=D0MUD0_PHYIT)

HSP 1 Score: 70.5 bits (171), Expect = 9.960e-11
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:  949 VVYI*M*MS*SDISMAVPVCNSLTFFFTAVTAWAMGESFQRPARTLAGMGLVLVGIGVCILSK 1137
            VVY+ + +  +DIS AVP+CNSLTF FTA+T+  +GE  QRPA T  GM L+L+G+ +C  SK
Sbjct:   70 VVYVYL-LGSADISNAVPICNSLTFVFTAITSRLLGEKPQRPASTYTGMVLILLGVAICFNSK 131
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BLAST of mRNA_C-tenellus_contig8208.1.1 vs. uniprot
Match: D7G2X6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2X6_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.250e-10
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:  970 MS*SDISMAVPVCNSLTFFFTAVTAWAMGESFQRPARTLAGMGLVLVGIGVCILSKAS--TTVP 1155
            +S  D+S AVPVCN+L+  FTA TA A+GE   RP RT++G+ L L+G+ VC+ SKA   T VP
Sbjct:   80 LSSQDVSTAVPVCNALSLVFTAATAMALGEKVDRPLRTVSGIVLALMGLAVCVASKAQLLTLVP 143
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BLAST of mRNA_C-tenellus_contig8208.1.1 vs. uniprot
Match: A0A225WLS3_9STRA (Putative membrane protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WLS3_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.430e-10
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:  949 VVYI*M*MS*SDISMAVPVCNSLTFFFTAVTAWAMGESFQRPARTLAGMGLVLVGIGVCILSKASTTV 1152
            VVY+ + +  +DIS AVP+CNSLTF FTA+T+  +GE  QRP  T  GM L+L+G+ +C  SK   +V
Sbjct:   70 VVYVYL-LGSADISNAVPICNSLTFVFTAITSRLLGEKPQRPVSTYTGMFLILLGVAICFDSKQQVSV 136
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BLAST of mRNA_C-tenellus_contig8208.1.1 vs. uniprot
Match: A0A3R7KFJ3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KFJ3_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 5.180e-10
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:  949 VVYI*M*MS*SDISMAVPVCNSLTFFFTAVTAWAMGESFQRPARTLAGMGLVLVGIGVCILSK 1137
            VVY+ + +  +DIS AVP+CNSLTF FTA+T+  +GE  QRP  T  GM L+L+G+ +C  SK
Sbjct:   72 VVYVYL-LGSADISNAVPICNSLTFVFTAITSRLLGEKPQRPISTYTGMVLILLGVAICFNSK 133
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BLAST of mRNA_C-tenellus_contig8208.1.1 vs. uniprot
Match: H3HB45_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB45_PHYRM)

HSP 1 Score: 70.5 bits (171), Expect = 8.910e-10
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:  949 VVYI*M*MS*SDISMAVPVCNSLTFFFTAVTAWAMGESFQRPARTLAGMGLVLVGIGVCILSK 1137
            VVY+ + +  +DIS AVP+CNSLTF FTA+T+  +GE  QRPA T  GM L+L+G+ +C  SK
Sbjct:   17 VVYVYL-LGSADISNAVPICNSLTFVFTAITSRLLGEKPQRPASTYTGMVLILLGVAICFNSK 78
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BLAST of mRNA_C-tenellus_contig8208.1.1 vs. uniprot
Match: A0A7S2CTM5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CTM5_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.060e-9
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:  931 VDYLPIVVYI*M*MS*SDISMAVPVCNSLTFFFTAVTAWAMGESFQRPARTLAGMGLVLVGIGVCILSK 1137
            ++ L  VVY  + +  +DISMAVP+CNSLTF FTA+T W +GE    P   + G+  VLVG+ +C+L  
Sbjct:   75 INQLGSVVYYIL-LGSADISMAVPICNSLTFVFTAITGWLLGERLGSPMCAVFGITCVLVGVTICVLDS 142
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BLAST of mRNA_C-tenellus_contig8208.1.1 vs. uniprot
Match: M4C2Y1_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C2Y1_HYAAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.700e-9
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:  949 VVYI*M*MS*SDISMAVPVCNSLTFFFTAVTAWAMGESFQRPARTLAGMGLVLVGIGVCILSK 1137
            VVY+ + +  +DIS AVP+CNSLTF FTA+T+  +GE  QRP  T  GM LVL+G+ +C  S+
Sbjct:   70 VVYVYL-LGSADISHAVPICNSLTFVFTAITSRLLGEKPQRPICTYMGMALVLLGVAICFDSQ 131
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BLAST of mRNA_C-tenellus_contig8208.1.1 vs. uniprot
Match: T0S5W7_SAPDV (Uncharacterized protein n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0S5W7_SAPDV)

HSP 1 Score: 66.2 bits (160), Expect = 2.650e-9
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:  979 SDISMAVPVCNSLTFFFTAVTAWAMGESFQRPARTLAGMGLVLVGIGVCILSK 1137
            SDISMAVP+CNS TF FTA+T+  +GE+ + P  T AGM  VL+G+ +C  SK
Sbjct:   75 SDISMAVPICNSFTFVFTALTSRLLGETPKNPLYTYAGMTCVLLGVAICFHSK 127
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BLAST of mRNA_C-tenellus_contig8208.1.1 vs. uniprot
Match: W2P4A6_PHYPR (BCNT-C domain-containing protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2P4A6_PHYPR)

HSP 1 Score: 70.5 bits (171), Expect = 3.470e-9
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:  949 VVYI*M*MS*SDISMAVPVCNSLTFFFTAVTAWAMGESFQRPARTLAGMGLVLVGIGVCILSK 1137
            VVY+ + +  +DIS AVP+CNSLTF FTA+T+  +GE  QRPA T  GM L+L+G+ +C  SK
Sbjct:   70 VVYVYL-LGSADISNAVPICNSLTFVFTAITSRLLGEKPQRPASTYTGMVLILLGVAICFNSK 131
[Close]
BLAST of mRNA_C-tenellus_contig8208.1.1 vs. uniprot
Match: A0A2P4WX60_9STRA (BCNT-C domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WX60_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.490e-9
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:  949 VVYI*M*MS*SDISMAVPVCNSLTFFFTAVTAWAMGESFQRPARTLAGMGLVLVGIGVCILSKASTT 1149
            VVY+ + +  +DIS AVP+CNSLTF FTA+T+  +GE  QRPA T  GM L+L+G+ +C  SK  ++
Sbjct:   77 VVYVYL-LGSADISNAVPICNSLTFVFTAITSRLLGEKPQRPASTYTGMILILLGVAICFNSKQDSS 142
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8208.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D0MUD0_PHYIT9.960e-1153.97Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
D7G2X6_ECTSI1.250e-1053.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A225WLS3_9STRA1.430e-1050.00Putative membrane protein n=1 Tax=Phytophthora meg... [more]
A0A3R7KFJ3_9STRA5.180e-1052.38Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
H3HB45_PHYRM8.910e-1053.97Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A7S2CTM5_9STRA1.060e-946.38Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
M4C2Y1_HYAAE1.700e-952.38Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
T0S5W7_SAPDV2.650e-956.60Uncharacterized protein n=2 Tax=Saprolegniaceae Ta... [more]
W2P4A6_PHYPR3.470e-953.97BCNT-C domain-containing protein n=1 Tax=Phytophth... [more]
A0A2P4WX60_9STRA3.490e-950.75BCNT-C domain-containing protein n=1 Tax=Phytophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8208contigC-tenellus_contig8208:2..2632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4792.ETI56167
PFAMsTMEM234
Model size2431
Max annot lvl4776|Peronosporales
Hectar predicted targeting categorysignal peptide
Exons2
Evalue6.69e-13
EggNOG OGsKOG4831@1|root,KOG4831@2759|Eukaryota,3QG2K@4776|Peronosporales
DescriptionPutative transmembrane family 234
Cds size171
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790086.6811807-UTR-C-tenellus_contig8208:1..12711680790086.6811807-UTR-C-tenellus_contig8208:1..1271Choristocarpus tenellus KU2346UTRC-tenellus_contig8208 2..1271 -
1680790086.7172391-UTR-C-tenellus_contig8208:1442..21481680790086.7172391-UTR-C-tenellus_contig8208:1442..2148Choristocarpus tenellus KU2346UTRC-tenellus_contig8208 1443..2148 -
1680790086.729384-UTR-C-tenellus_contig8208:2348..26321680790086.729384-UTR-C-tenellus_contig8208:2348..2632Choristocarpus tenellus KU2346UTRC-tenellus_contig8208 2349..2632 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790086.6933694-CDS-C-tenellus_contig8208:1271..14421680790086.6933694-CDS-C-tenellus_contig8208:1271..1442Choristocarpus tenellus KU2346CDSC-tenellus_contig8208 1272..1442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8208.1.1prot_C-tenellus_contig8208.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8208 1272..1442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8208.1.1

>prot_C-tenellus_contig8208.1.1 ID=prot_C-tenellus_contig8208.1.1|Name=mRNA_C-tenellus_contig8208.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=57bp
MAVPVCNSLTFFFTAVTAWAMGESFQRPARTLAGMGLVLVGIGVCILSKA
STTVPQ*
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mRNA from alignment at C-tenellus_contig8208:2..2632-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8208.1.1 ID=mRNA_C-tenellus_contig8208.1.1|Name=mRNA_C-tenellus_contig8208.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2631bp|location=Sequence derived from alignment at C-tenellus_contig8208:2..2632- (Choristocarpus tenellus KU2346)
CCTGCTGGTGGGAGCGTGCTGGGGCTGTACGACTCCTTTCATCAAGAAGG
GCGAGTTTTTTTGGCACTGATGGACATGTTTACGTGAGGCTTTATTCGGT
TGGAAACAGGGAATGAAACTGAGATCTGTTGGTTTGAGAGGGTAGATATT
GTATTGCTCATACTTTTCTCCGCTTTGCAGGGACAAGTTTACCTGATGAA
GCACCTGATGCAAGGCAAGAATCGGAAAAGAGTGGAGTCTTGCCACGACT
CCTACGTCCTCTTTCAAGTCTCGCAAACCCAAAGGTGACAGTATTTTTTT
CCTGAAGCGTGGTCGCTAACCTTGGGTATTGCTTTGTACACGTGAAGGTA
TCTCACTGCCTCTCTATTAGTAGGCAAAGCACTATCTCCGCCACGTTGAC
GTGACGGTCCCACAAATATTTTATCTCGAACAACTCTGGTTCAACCTCCA
CGTCCCATACCTCTGCATTTATCTCTGTCGGCAGGCGGCGTTACCATATC
TCTTGAATCAGTCAGGATCCGGACTTTACTACTACCTTCTCGGATCACAA
GGTATATATATTCATCGCATGTGGTTTGGCATGGAATGGAATATTAATTT
TCCCGCAAGACTCGCATGCGATTGACAATAAAAAACATTGTTTCGCGTGA
ACTAGTCGATAAGAGCAGTCTGTGAGATCACCGTGCTTAACGTCGCGCTT
CTGGTGCATTAGTTATTGTTACAATATACATACGGAAAATCTCTTCAATG
CTGTGGGTTAGTGCTGTGTTTAGCCTAGATGCTAAAGCGATACTACGGGC
ACTTGTTTCATACACACCAATCAGAAGGTCGCTACAATATTATTCCCCCC
CCCTCCTTTGATGAACCTATCTGAATGTAAACATGCCCTAGTGAGTCTCC
CAATGAACACTGTAGAACACCCTTTGATGCAATGACCTCCTGGCTAAATC
AAACCCAGGACAATTCTTGAGAGTATCACCTGCCGTGATAACTTACTTGG
TAATAATAATTTTGTGCATCACATAGCTTCTCACATGTGATATTCATTTG
TTCACCCTATCCTTCCATTACCCATAGCATTCCGTACAGAGCAATGGCAC
CCTCTCTCAGTGAAAGCCCAAGACTTATGAGTTGATTATCTGCCTATTGT
TGTGTATATTTGAATGTGAATGTCATGATCAGATATCTCTATGGCAGTGC
CAGTGTGTAATTCACTGACTTTCTTCTTCACAGCTGTGACGGCATGGGCA
ATGGGAGAAAGTTTTCAGCGTCCTGCGCGAACATTGGCAGGCATGGGACT
AGTGCTAGTTGGGATAGGTGTGTGCATTCTCAGTAAGGCAAGTACTACTG
TGCCTCAGTGATACATTGCCCTCTGCAGACGTTCAACTAGCTGTGTACAG
TATATATGTAAGTTAGATAAATGAGTGATGTTATGGAATATTTGGGATAT
AGACCTACAACCCCTTTGGTTTTGAAAGGACCATACTTTTTTCAACTTAA
AAAAAAACAATAATTACGAAATTAGCCTACAGCACCTGTTGCCTCTCTCA
GTACTGTGGCCATCGTTTTTCTGGTAGGGTCCTAAAGTAGTTCCAACACA
TTATGAACGGTTGAAGATTGTGCCTCCGGTGTTTGCTCTTGCGATTATCT
ACACGGCGATGGTCTGTTATGACCCATTACTCTCATCTTGCCTTTCCATG
ACAATCCAAGAACACCCTGCAGCACTTTGTTTTTCCTCAATACCCTCTGC
CAGCTTTGTTACACATTTTGTATTTGGACCTTACCGTGTGATGGAGTTGG
CTCCACGTCCTTCCCAGGGTTGGATGTAAGACCTTGACGGTACTCATGCC
ACATTCCTCAGCGAATAGATGATAGGCTGCAACCTCTTACTGCAATCATG
TCACCTTTAGTCAGGGATTGATAGCAAGCTGGAACTTATCTCTGCAACCA
GCGCTTCAAATTTATTTTGACTACGTAATACCCCCATCCCAGTCAAACCC
TTCGTGTCTGTATTTGATGTAAATTGTGTTGAGCGAGCTTTGTCTTCTCA
GCACAGCTCAATGGGAGACAGGACCAGCCAGTAGTGAGCTTTTTCTCATG
GTTAGTGAGAATAACATCACCACAACAGTATCAGATCTTCTTTTGCAGGG
CAGAAGTACTGATCACCATACTGAACTGGGAGTTCTATACTGCCATAGTG
CAGGATGAGTGTGAGCATTAGCTTGAAAATGAGCACATGGGGCATGTTGG
GTGGGATTGCCGGTGGGGTTTCTTGTCGTTGAGTGAACTAAGAGGCATTT
TCCTCGATCTTGTACTCTTGTCTTGGTTTGGATAACCATCCAAAGTATTG
ATGTCGATAGTGATACCTTCATGCAAATTTGTGGATGTGCAGTTACATGT
CTTTTGATACAGTGATTGTGTTCACCGGAAAAGCATGGTAGACACACCCA
GAATATCAAGCAACCATTGCGATTGACTCAAAGTATCTGGGGGGAGGGGG
GTGGTGGCTGTGCATTTGGGGTCAATTTTTTCATGTCGCGATTTTTTTGT
GATTTGATTGCATACATCAGATGGATAATGTAGATGAACTTTTCCTTATT
TTTGTCCAAATGGACACCCTGGTGTAGACCC
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Coding sequence (CDS) from alignment at C-tenellus_contig8208:2..2632-

>mRNA_C-tenellus_contig8208.1.1 ID=mRNA_C-tenellus_contig8208.1.1|Name=mRNA_C-tenellus_contig8208.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=171bp|location=Sequence derived from alignment at C-tenellus_contig8208:2..2632- (Choristocarpus tenellus KU2346)
ATGGCAGTGCCAGTGTGTAATTCACTGACTTTCTTCTTCACAGCTGTGAC
GGCATGGGCAATGGGAGAAAGTTTTCAGCGTCCTGCGCGAACATTGGCAG
GCATGGGACTAGTGCTAGTTGGGATAGGTGTGTGCATTCTCAGTAAGGCA
AGTACTACTGTGCCTCAGTGA
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