mRNA_C-tenellus_contig8129.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8129.1.1
Unique NamemRNA_C-tenellus_contig8129.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8129.1.1 vs. uniprot
Match: D7G9B5_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B5_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 5.170e-21
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 VAALHNLAKEMARANVVTYSAALSSCARHAKWEEALGLLKEMKEEGIDPNDYSYSAAMWACVNAKQPKR 207
            VA LH  A+   +ANVVTYSAA+S+CA+  +W +AL LL EM+ +GI+PNDYS+SAAMWACVNA + KR
Sbjct: 1363 VAKLHEEARRRGKANVVTYSAAISACAKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVNADEGKR 1431
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BLAST of mRNA_C-tenellus_contig8129.1.1 vs. uniprot
Match: A0A6H5KZI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.320e-20
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 VAALHNLAKEMARANVVTYSAALSSCARHAKWEEALGLLKEMKEEGIDPNDYSYSAAMWACVNAKQPKR 207
            VA LH  A+   +ANVVTYSAA+S+CA+  +W +AL LL EM+ +GI+PNDYS+SAAMWACVNA + KR
Sbjct: 1498 VAKLHAEARRRGKANVVTYSAAISACAKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVNAGEGKR 1566
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BLAST of mRNA_C-tenellus_contig8129.1.1 vs. uniprot
Match: A0A1S2YJ85_CICAR (pentatricopeptide repeat-containing protein At4g18520, chloroplastic-like n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2YJ85_CICAR)

HSP 1 Score: 58.2 bits (139), Expect = 3.780e-8
Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:   16 NLAKEMARANVVTYSAALSSCARHAKWEEALGLLKEMKEEGIDPNDYSYSAAMWACVNAKQP 201
            N+ K M   +VV+++A +S CAR     EAL  L+EM EEG+ PN Y+YS+A+ AC   + P
Sbjct:  609 NVLKHMPFRDVVSWTAIISGCARLGLEAEALEFLREMMEEGVSPNSYTYSSALKACAKLEAP 670
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BLAST of mRNA_C-tenellus_contig8129.1.1 vs. uniprot
Match: A0A7N2N612_QUELO (Uncharacterized protein n=3 Tax=Fagaceae TaxID=3503 RepID=A0A7N2N612_QUELO)

HSP 1 Score: 57.8 bits (138), Expect = 5.130e-8
Identity = 26/55 (47.27%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   25 KEMARANVVTYSAALSSCARHAKWEEALGLLKEMKEEGIDPNDYSYSAAMWACVN 189
            ++M   +VV+++A +S CAR  +  EAL  LKEM EEG+DPN +++S+A+ AC N
Sbjct:  456 QQMPLRDVVSWTAIISGCARLGQESEALEFLKEMMEEGVDPNSFTFSSALKACAN 510
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BLAST of mRNA_C-tenellus_contig8129.1.1 vs. uniprot
Match: A0A6A1UYM6_9ROSI (Uncharacterized protein n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1UYM6_9ROSI)

HSP 1 Score: 57.4 bits (137), Expect = 7.010e-8
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:   16 NLAKEMARANVVTYSAALSSCARHAKWEEALGLLKEMKEEGIDPNDYSYSAAMWACVN 189
            N+ ++M   +VV+++A +S  AR     EAL  LKEM EEG+DPN ++YS+A+ AC N
Sbjct:  446 NVLQQMPLRDVVSWTAIISGSARFGHESEALEFLKEMMEEGVDPNSFTYSSALKACAN 503
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BLAST of mRNA_C-tenellus_contig8129.1.1 vs. uniprot
Match: UPI001E693A1E (pentatricopeptide repeat-containing protein At4g18520, chloroplastic isoform X1 n=2 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E693A1E)

HSP 1 Score: 55.8 bits (133), Expect = 2.480e-7
Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:   16 NLAKEMARANVVTYSAALSSCARHAKWEEALGLLKEMKEEGIDPNDYSYSAAMWACVNAKQP 201
            N+ K M   +VV+++A +S CAR     EAL  L+EM EEG+ PN Y+YS+A+ AC   + P
Sbjct:  689 NVLKHMPFRDVVSWTAIISGCARLGLETEALEFLREMIEEGVLPNSYTYSSALKACAKLEAP 750
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BLAST of mRNA_C-tenellus_contig8129.1.1 vs. uniprot
Match: A0A2I4FKB4_JUGRE (pentatricopeptide repeat-containing protein At4g18520, chloroplastic-like n=7 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4FKB4_JUGRE)

HSP 1 Score: 55.5 bits (132), Expect = 3.350e-7
Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   25 KEMARANVVTYSAALSSCARHAKWEEALGLLKEMKEEGIDPNDYSYSAAMWACVN 189
            ++M R +VV+++A +S  AR     EAL LL EM EEG+DPN ++YS+A+ AC N
Sbjct:  463 QQMPRRDVVSWTAIISGGARLGHESEALELLGEMMEEGVDPNSFTYSSALKACAN 517
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BLAST of mRNA_C-tenellus_contig8129.1.1 vs. uniprot
Match: UPI000B8CDF7E (pentatricopeptide repeat-containing protein At4g18520, chloroplastic isoform X1 n=3 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CDF7E)

HSP 1 Score: 54.7 bits (130), Expect = 6.260e-7
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:   25 KEMARANVVTYSAALSSCARHAKWEEALGLLKEMKEEGIDPNDYSYSAAMWACVN 189
            ++MA  +VV+++A +S CA      EAL  LKEM +EG+ PN ++YS+A+ AC N
Sbjct:  450 QQMALRDVVSWTAMISGCANLGHESEALEFLKEMMDEGVKPNSFTYSSALKACAN 504
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BLAST of mRNA_C-tenellus_contig8129.1.1 vs. uniprot
Match: G7JIR5_MEDTR (PPR containing plant-like protein n=2 Tax=Medicago truncatula TaxID=3880 RepID=G7JIR5_MEDTR)

HSP 1 Score: 54.7 bits (130), Expect = 6.290e-7
Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:   16 NLAKEMARANVVTYSAALSSCARHAKWEEALGLLKEMKEEGIDPNDYSYSAAMWACVNAKQP 201
            N+ K +   +VV+++A +S CAR     EAL  L+EM EEG+ PN Y+YS+A+ AC   + P
Sbjct:  508 NVLKYIPLRDVVSWTAIISGCARLGLETEALEFLREMMEEGVLPNSYTYSSALKACAKLETP 569
[Close]
BLAST of mRNA_C-tenellus_contig8129.1.1 vs. uniprot
Match: A0A1J3ISP2_NOCCA (Pentatricopeptide repeat-containing protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3ISP2_NOCCA)

HSP 1 Score: 53.5 bits (127), Expect = 6.700e-7
Identity = 23/60 (38.33%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   16 NLAKEMARANVVTYSAALSSCARHAKWEEALGLLKEMKEEGIDPNDYSYSAAMWACVNAK 195
            N+ +++   +VV+++A +S C+      EAL  LKEM +EG++PN ++YS+A+ AC N++
Sbjct:   80 NVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKEMIQEGVEPNPFTYSSALKACANSE 139
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8129.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9B5_ECTSI5.170e-2162.32PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZI4_9PHAE1.320e-2062.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1S2YJ85_CICAR3.780e-845.16pentatricopeptide repeat-containing protein At4g18... [more]
A0A7N2N612_QUELO5.130e-847.27Uncharacterized protein n=3 Tax=Fagaceae TaxID=350... [more]
A0A6A1UYM6_9ROSI7.010e-846.55Uncharacterized protein n=1 Tax=Morella rubra TaxI... [more]
UPI001E693A1E2.480e-745.16pentatricopeptide repeat-containing protein At4g18... [more]
A0A2I4FKB4_JUGRE3.350e-749.09pentatricopeptide repeat-containing protein At4g18... [more]
UPI000B8CDF7E6.260e-745.45pentatricopeptide repeat-containing protein At4g18... [more]
G7JIR5_MEDTR6.290e-743.55PPR containing plant-like protein n=2 Tax=Medicago... [more]
A0A1J3ISP2_NOCCA6.700e-738.33Pentatricopeptide repeat-containing protein (Fragm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8129contigC-tenellus_contig8129:767..2132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G9B5
PFAMsPPR,PPR_2,PPR_3
Model size219
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.1e-19
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Descriptionendonuclease activity
Cds size189
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790082.0271752-UTR-C-tenellus_contig8129:766..7961680790082.0271752-UTR-C-tenellus_contig8129:766..796Choristocarpus tenellus KU2346UTRC-tenellus_contig8129 767..796 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790082.037522-CDS-C-tenellus_contig8129:796..9011680790082.037522-CDS-C-tenellus_contig8129:796..901Choristocarpus tenellus KU2346CDSC-tenellus_contig8129 797..901 +
1680790082.0469592-CDS-C-tenellus_contig8129:2048..21321680790082.0469592-CDS-C-tenellus_contig8129:2048..2132Choristocarpus tenellus KU2346CDSC-tenellus_contig8129 2049..2132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8129.1.1prot_C-tenellus_contig8129.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8129 797..2132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8129.1.1

>prot_C-tenellus_contig8129.1.1 ID=prot_C-tenellus_contig8129.1.1|Name=mRNA_C-tenellus_contig8129.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=63bp
MARANVVTYSAALSSCARHAKWEEALGLLKEMKEEGIDPNDYSYSAAMWA
CVNAKQPKRCGA*
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mRNA from alignment at C-tenellus_contig8129:767..2132+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8129.1.1 ID=mRNA_C-tenellus_contig8129.1.1|Name=mRNA_C-tenellus_contig8129.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1366bp|location=Sequence derived from alignment at C-tenellus_contig8129:767..2132+ (Choristocarpus tenellus KU2346)
GTTGCGGCCCTGCACAACCTGGCCAAAGAGATGGCACGTGCAAATGTGGT
GACCTACTCTGCAGCCCTCTCATCCTGTGCCAGACATGCCAAGTGGGAAG
AGGCCCTGGGTCTGCTGAAGGAAATGAAGGAGGAGGTGAGCCAGGAGGGG
GGGGGAGGGTTGTTTAATTTTTATTTTTCCGCCTGTTGTGTTCCAACCAT
GGATCAATGGAATATATTTTTTTAAATGACACCCTCAAACAAAAAAAGGC
GGTAGGATGATAATAAGCGTGTGGGCCCTGAGTCTGCCTCTGTGAGTCCA
AGTGGGAGTTGCCAAAACACAGCGTTAAATGTTTTGGACGAATGCCTTCG
GCGTATTTATTTTTTTGTGTGTTTATTTATTATACTTATTATACTGTTCA
GTACGGAACGGAAATATTTATTTTTATTTGGGGGGGGTTTGCGGTACGTG
TTTGAATATATGTCAGGAAATTTCCTCCCCTCCCAAAAAAAAACAAAAAA
ACATACATATATATTTGTGGAAGGGTATGAAAATTGTAGGTGAGGTTGGG
CAGAGGTGTACAAAATGGTGAAAATAATAAAAAGGATGTTGATATTAACT
GTTGATATTAACTACTACTCCTACTGTGGTCAGGTTTTTGTACATAGTTC
TATACTCGGTTGACCTCTAAAAAAAAACATATCTAGATATAGTAGCACAA
TGTGAGATGCTCTGGAGTACTTGATAACGTGCCATTTAAATAGTAGCACA
ATCATGAGATAACACAGTTGTAGGACCTGAGAAACTCGGTAGAAGGACAG
ACAGACAACAACTTAATTCAGTATGAGATTACAAGATTACACAGTTGGAT
GATGACCTGGTATGGCATAGCAGAATAGCAAATAATAACACAGCTCGATG
TGAAGTAACACAACATCTTGTATGTAAGGGTGAAAGAATCTTAGAGGGTA
TGTATATTAATCTTTTTCCCTGTTTGCCTATTCGGGGCTTGGCTTCCCAC
GGGTTTTTATAATATTTTCCTACTCCAAAATGTTTATAAATTAAAAAAAA
AGGTGTATCTGGAACAAAGATATTGACATCTCCTAACAAACACGATAGTA
GCCAAAATTACATCAAAATCGCAACATTGGTGGATTTTGGCCCCCCAAAT
GGACACAGCTCTACCCTCTGGGATGCTTTGACTGTAGTTAACACACTGCT
AAGTTTATGTAATGCAAGACCCGAACCATTGTTCCGTTATTTTGTTATAT
TATTTTCCCACTCTGTCGCCGCATCCCCTCAGGGGATAGATCCGAATGAC
TACAGCTACAGTGCCGCTATGTGGGCATGTGTCAACGCAAAGCAGCCAAA
GAGGTGCGGAGCTTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig8129:767..2132+

>mRNA_C-tenellus_contig8129.1.1 ID=mRNA_C-tenellus_contig8129.1.1|Name=mRNA_C-tenellus_contig8129.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=189bp|location=Sequence derived from alignment at C-tenellus_contig8129:767..2132+ (Choristocarpus tenellus KU2346)
ATGGCACGTGCAAATGTGGTGACCTACTCTGCAGCCCTCTCATCCTGTGC
CAGACATGCCAAGTGGGAAGAGGCCCTGGGTCTGCTGAAGGAAATGAAGG
AGGAGGGGATAGATCCGAATGACTACAGCTACAGTGCCGCTATGTGGGCA
TGTGTCAACGCAAAGCAGCCAAAGAGGTGCGGAGCTTAA
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