prot_C-tenellus_contig8129.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig8129.1.1
Unique Nameprot_C-tenellus_contig8129.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length63
Homology
BLAST of mRNA_C-tenellus_contig8129.1.1 vs. uniprot
Match: D7G9B5_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B5_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 6.720e-19
Identity = 38/57 (66.67%), Postives = 49/57 (85.96%), Query Frame = 0
Query:    3 RANVVTYSAALSSCARHAKWEEALGLLKEMKEEGIDPNDYSYSAAMWACVNAKQPKR 59
            +ANVVTYSAA+S+CA+  +W +AL LL EM+ +GI+PNDYS+SAAMWACVNA + KR
Sbjct: 1375 KANVVTYSAAISACAKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVNADEGKR 1431          
BLAST of mRNA_C-tenellus_contig8129.1.1 vs. uniprot
Match: A0A6H5KZI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 9.200e-19
Identity = 38/57 (66.67%), Postives = 49/57 (85.96%), Query Frame = 0
Query:    3 RANVVTYSAALSSCARHAKWEEALGLLKEMKEEGIDPNDYSYSAAMWACVNAKQPKR 59
            +ANVVTYSAA+S+CA+  +W +AL LL EM+ +GI+PNDYS+SAAMWACVNA + KR
Sbjct: 1510 KANVVTYSAAISACAKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVNAGEGKR 1566          
BLAST of mRNA_C-tenellus_contig8129.1.1 vs. uniprot
Match: A0A7N2N612_QUELO (Uncharacterized protein n=3 Tax=Fagaceae TaxID=3503 RepID=A0A7N2N612_QUELO)

HSP 1 Score: 57.0 bits (136), Expect = 6.360e-8
Identity = 25/49 (51.02%), Postives = 37/49 (75.51%), Query Frame = 0
Query:    5 NVVTYSAALSSCARHAKWEEALGLLKEMKEEGIDPNDYSYSAAMWACVN 53
            +VV+++A +S CAR  +  EAL  LKEM EEG+DPN +++S+A+ AC N
Sbjct:  462 DVVSWTAIISGCARLGQESEALEFLKEMMEEGVDPNSFTFSSALKACAN 510          
BLAST of mRNA_C-tenellus_contig8129.1.1 vs. uniprot
Match: A0A1S2YJ85_CICAR (pentatricopeptide repeat-containing protein At4g18520, chloroplastic-like n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2YJ85_CICAR)

HSP 1 Score: 55.1 bits (131), Expect = 3.060e-7
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 0
Query:    5 NVVTYSAALSSCARHAKWEEALGLLKEMKEEGIDPNDYSYSAAMWACVNAKQP 57
            +VV+++A +S CAR     EAL  L+EM EEG+ PN Y+YS+A+ AC   + P
Sbjct:  618 DVVSWTAIISGCARLGLEAEALEFLREMMEEGVSPNSYTYSSALKACAKLEAP 670          
BLAST of mRNA_C-tenellus_contig8129.1.1 vs. uniprot
Match: A0A6A1UYM6_9ROSI (Uncharacterized protein n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1UYM6_9ROSI)

HSP 1 Score: 54.7 bits (130), Expect = 4.160e-7
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    5 NVVTYSAALSSCARHAKWEEALGLLKEMKEEGIDPNDYSYSAAMWACVN 53
            +VV+++A +S  AR     EAL  LKEM EEG+DPN ++YS+A+ AC N
Sbjct:  455 DVVSWTAIISGSARFGHESEALEFLKEMMEEGVDPNSFTYSSALKACAN 503          
BLAST of mRNA_C-tenellus_contig8129.1.1 vs. uniprot
Match: A0A2I4FKB4_JUGRE (pentatricopeptide repeat-containing protein At4g18520, chloroplastic-like n=7 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4FKB4_JUGRE)

HSP 1 Score: 54.3 bits (129), Expect = 5.690e-7
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 0
Query:    1 MARANVVTYSAALSSCARHAKWEEALGLLKEMKEEGIDPNDYSYSAAMWACVN 53
            M R +VV+++A +S  AR     EAL LL EM EEG+DPN ++YS+A+ AC N
Sbjct:  465 MPRRDVVSWTAIISGGARLGHESEALELLGEMMEEGVDPNSFTYSSALKACAN 517          
BLAST of mRNA_C-tenellus_contig8129.1.1 vs. uniprot
Match: UPI000B8CDF7E (pentatricopeptide repeat-containing protein At4g18520, chloroplastic isoform X1 n=3 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CDF7E)

HSP 1 Score: 53.5 bits (127), Expect = 1.060e-6
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 0
Query:    1 MARANVVTYSAALSSCARHAKWEEALGLLKEMKEEGIDPNDYSYSAAMWACVN 53
            MA  +VV+++A +S CA      EAL  LKEM +EG+ PN ++YS+A+ AC N
Sbjct:  452 MALRDVVSWTAMISGCANLGHESEALEFLKEMMDEGVKPNSFTYSSALKACAN 504          
BLAST of mRNA_C-tenellus_contig8129.1.1 vs. uniprot
Match: G7JIR5_MEDTR (PPR containing plant-like protein n=2 Tax=Medicago truncatula TaxID=3880 RepID=G7JIR5_MEDTR)

HSP 1 Score: 53.5 bits (127), Expect = 1.070e-6
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 0
Query:    5 NVVTYSAALSSCARHAKWEEALGLLKEMKEEGIDPNDYSYSAAMWACVNAKQP 57
            +VV+++A +S CAR     EAL  L+EM EEG+ PN Y+YS+A+ AC   + P
Sbjct:  517 DVVSWTAIISGCARLGLETEALEFLREMMEEGVLPNSYTYSSALKACAKLETP 569          
BLAST of mRNA_C-tenellus_contig8129.1.1 vs. uniprot
Match: UPI001262DDEE (pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI001262DDEE)

HSP 1 Score: 53.5 bits (127), Expect = 1.070e-6
Identity = 20/51 (39.22%), Postives = 38/51 (74.51%), Query Frame = 0
Query:    5 NVVTYSAALSSCARHAKWEEALGLLKEMKEEGIDPNDYSYSAAMWACVNAK 55
            NV++++A ++ C +H  +E+AL L   M+E+G+DPN+Y+Y+ A+ +C + K
Sbjct:  280 NVISWTAIINGCRQHGDFEKALRLFCLMREDGVDPNEYTYTIALASCASMK 330          
BLAST of mRNA_C-tenellus_contig8129.1.1 vs. uniprot
Match: A0A2P6PHY0_ROSCH (Putative tetratricopeptide-like helical domain-containing protein n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6PHY0_ROSCH)

HSP 1 Score: 53.1 bits (126), Expect = 1.460e-6
Identity = 23/49 (46.94%), Postives = 36/49 (73.47%), Query Frame = 0
Query:    5 NVVTYSAALSSCARHAKWEEALGLLKEMKEEGIDPNDYSYSAAMWACVN 53
            +VV+++A +S CA      EA+ LLKEM E+G++PN ++YS+A+ AC N
Sbjct:  451 DVVSWTAIISGCAHLGHESEAIELLKEMMEDGVEPNAFTYSSALKACAN 499          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8129.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9B5_ECTSI6.720e-1966.67PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZI4_9PHAE9.200e-1966.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7N2N612_QUELO6.360e-851.02Uncharacterized protein n=3 Tax=Fagaceae TaxID=350... [more]
A0A1S2YJ85_CICAR3.060e-747.17pentatricopeptide repeat-containing protein At4g18... [more]
A0A6A1UYM6_9ROSI4.160e-751.02Uncharacterized protein n=1 Tax=Morella rubra TaxI... [more]
A0A2I4FKB4_JUGRE5.690e-750.94pentatricopeptide repeat-containing protein At4g18... [more]
UPI000B8CDF7E1.060e-647.17pentatricopeptide repeat-containing protein At4g18... [more]
G7JIR5_MEDTR1.070e-647.17PPR containing plant-like protein n=2 Tax=Medicago... [more]
UPI001262DDEE1.070e-639.22pentatricopeptide repeat-containing protein At2g03... [more]
A0A2P6PHY0_ROSCH1.460e-646.94Putative tetratricopeptide-like helical domain-con... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 7..40
e-value: 8.4E-10
score: 36.2
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 5..51
e-value: 5.9E-13
score: 48.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 5..39
score: 12.945
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..61
e-value: 8.4E-15
score: 57.0
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..16
score: 5.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8129contigC-tenellus_contig8129:797..2132 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8129.1.1mRNA_C-tenellus_contig8129.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig8129 767..2132 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig8129.1.1 ID=prot_C-tenellus_contig8129.1.1|Name=mRNA_C-tenellus_contig8129.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=63bp
MARANVVTYSAALSSCARHAKWEEALGLLKEMKEEGIDPNDYSYSAAMWA
CVNAKQPKRCGA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf