mRNA_C-tenellus_contig8087.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8087.1.1
Unique NamemRNA_C-tenellus_contig8087.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8087.1.1 vs. uniprot
Match: A0A7S3ZVE2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZVE2_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.630e-8
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:    4 CLLRYCQCFAGQAPCSTACNCLNCHNTLAHSRERQRAMTGLLVRNPNAFATKFK 165
            CL  YC CFA    C   CNC++CHN LAH++ER  A+   L +NP AF  K K
Sbjct:  399 CLKLYCDCFAAGRWCK-GCNCVDCHNDLAHAKERDEAIRATLEKNPKAFRAKVK 451
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BLAST of mRNA_C-tenellus_contig8087.1.1 vs. uniprot
Match: A0A6G1SKJ5_9ACAR (Protein lin-54 n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1SKJ5_9ACAR)

HSP 1 Score: 53.5 bits (127), Expect = 8.140e-7
Identity = 27/53 (50.94%), Postives = 32/53 (60.38%), Query Frame = 1 
Query:    4 CLLRYCQCFAGQAPCSTACNCLNCHNTLAHSRERQRAMTGLLVRNPNAFATKF 162
            CL  YC CFA    CS  CNC NC N+L   +ERQ+A++  L RNP AF  K 
Sbjct:  177 CLKLYCDCFANGEFCS-GCNCTNCSNSLDKEKERQKAISQCLERNPEAFRPKI 228
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BLAST of mRNA_C-tenellus_contig8087.1.1 vs. uniprot
Match: A0A1R2B5P7_9CILI (CRC domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2B5P7_9CILI)

HSP 1 Score: 47.0 bits (110), Expect = 8.060e-5
Identity = 27/57 (47.37%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:    4 CLLRYCQCFAGQAPCSTACNCLNCHNTLAHSRERQRAMTGLLVRNPNAFAT-KFKTE 171
            CL  YC+CF+    C   CNC+NC N   +   R +A+T LL RN  AFAT K KT+
Sbjct:   61 CLKLYCECFSKGRYC-IGCNCINCFNVPEYESIRNKAVTHLLHRNSEAFATEKNKTK 116
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8087.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S3ZVE2_9STRA2.630e-850.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6G1SKJ5_9ACAR8.140e-750.94Protein lin-54 n=1 Tax=Aceria tosichella TaxID=561... [more]
A0A1R2B5P7_9CILI8.060e-547.37CRC domain-containing protein n=1 Tax=Stentor coer... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8087contigC-tenellus_contig8087:4348..4518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FZ03
PFAMsTCR
Model size171
Max annot lvl2759|Eukaryota
KEGG koko:K21776
KEGG Pathwayko04218,map04218
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0001067,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007275,GO:0008150,GO:0009653,GO:0009791,GO:0009889,GO:0009908,GO:0009934,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0022414,GO:0022603,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044212,GO:0044424,GO:0044464,GO:0048367,GO:0048437,GO:0048444,GO:0048509,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051252,GO:0051302,GO:0060255,GO:0061458,GO:0065007,GO:0080090,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0097159,GO:0099402,GO:0140110,GO:1901363,GO:1903506,GO:1905392,GO:2000112,GO:2001141
Exons1
Evalue2.95e-16
EggNOG OGsKOG1171@1|root,KOG1171@2759|Eukaryota
Ec32 ortholog descriptionCRC domain
Ec32 orthologEc-06_002100.1
DescriptionDNA-binding transcription factor activity
Cds size171
COG categoryS
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790079.0171473-CDS-C-tenellus_contig8087:4347..45181680790079.0171473-CDS-C-tenellus_contig8087:4347..4518Choristocarpus tenellus KU2346CDSC-tenellus_contig8087 4348..4518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8087.1.1prot_C-tenellus_contig8087.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8087 4348..4518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8087.1.1

>prot_C-tenellus_contig8087.1.1 ID=prot_C-tenellus_contig8087.1.1|Name=mRNA_C-tenellus_contig8087.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=57bp
MCLLRYCQCFAGQAPCSTACNCLNCHNTLAHSRERQRAMTGLLVRNPNAF
ATKFKTE
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mRNA from alignment at C-tenellus_contig8087:4348..4518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8087.1.1 ID=mRNA_C-tenellus_contig8087.1.1|Name=mRNA_C-tenellus_contig8087.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=171bp|location=Sequence derived from alignment at C-tenellus_contig8087:4348..4518+ (Choristocarpus tenellus KU2346)
ATGTGCTTGTTAAGGTACTGCCAGTGCTTTGCTGGACAGGCACCCTGCTC
CACGGCATGCAACTGCCTGAATTGCCACAATACATTGGCTCACAGTAGGG
AGCGCCAAAGAGCCATGACTGGGCTGCTAGTGCGAAATCCCAATGCATTT
GCTACAAAGTTCAAGACTGAG
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Coding sequence (CDS) from alignment at C-tenellus_contig8087:4348..4518+

>mRNA_C-tenellus_contig8087.1.1 ID=mRNA_C-tenellus_contig8087.1.1|Name=mRNA_C-tenellus_contig8087.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=171bp|location=Sequence derived from alignment at C-tenellus_contig8087:4348..4518+ (Choristocarpus tenellus KU2346)
ATGTGCTTGTTAAGGTACTGCCAGTGCTTTGCTGGACAGGCACCCTGCTC
CACGGCATGCAACTGCCTGAATTGCCACAATACATTGGCTCACAGTAGGG
AGCGCCAAAGAGCCATGACTGGGCTGCTAGTGCGAAATCCCAATGCATTT
GCTACAAAGTTCAAGACTGAG
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