mRNA_C-tenellus_contig7903.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7903.1.1
Unique NamemRNA_C-tenellus_contig7903.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig7903.1.1 vs. uniprot
Match: D8LIY1_ECTSI (ClpS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIY1_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 6.960e-7
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 2 
Query:  500 EVEAKQEIKAEEEWRVILHNDEIHTFDYVTQSITK 604
            EV+ K+E+  E+ WRVILHNDEIHTFDYVTQSITK
Sbjct:  100 EVDNKEELDKEQWWRVILHNDEIHTFDYVTQSITK 134
[Close]
BLAST of mRNA_C-tenellus_contig7903.1.1 vs. uniprot
Match: A0A1Z5JEC0_FISSO (ClpS domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JEC0_FISSO)

HSP 1 Score: 53.5 bits (127), Expect = 1.500e-5
Identity = 36/91 (39.56%), Postives = 53/91 (58.24%), Query Frame = 2 
Query:  338 LSPVRG--QLPRGE*SQLC*CRPLERLQERKLGPRSS*KRELLRKWRCVELFHVLREVEAKQEIKAEEEWRVILHNDEIHTFDYVTQSITK 604
            L+PV G   LPR   S L      +RL +  +   S  K    +K + V++     E +A+++ K EE WRV+LHNDE+HTF+YV +S+TK
Sbjct:   16 LTPVHGFAVLPRSS-STLT---SPQRLSDTSIYMSSVEKSSTTKKGKSVQVIDKT-ETKAEEQKKKEEMWRVVLHNDEVHTFNYVVRSLTK 101
[Close]
BLAST of mRNA_C-tenellus_contig7903.1.1 vs. uniprot
Match: A0A835ZHY3_9STRA (Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHY3_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.850e-5
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 2 
Query:  503 VEAKQEIKAEEEWRVILHNDEIHTFDYVTQSITK 604
            V+ K+++  E+ WRVILHND+IHTFDYVT SITK
Sbjct:   20 VQRKEQLDKEKWWRVILHNDDIHTFDYVTLSITK 53
[Close]
BLAST of mRNA_C-tenellus_contig7903.1.1 vs. uniprot
Match: A0A835ZBL6_9STRA (Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBL6_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 4.290e-5
Identity = 23/35 (65.71%), Postives = 30/35 (85.71%), Query Frame = 2 
Query:  500 EVEAKQEIKAEEEWRVILHNDEIHTFDYVTQSITK 604
            +V+ K+++  E+ WRVILHND+IHTFDYVT SITK
Sbjct:   66 QVQRKEQLDKEKWWRVILHNDDIHTFDYVTLSITK 100
[Close]
BLAST of mRNA_C-tenellus_contig7903.1.1 vs. uniprot
Match: A0A7S2WJ96_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WJ96_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 4.600e-5
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 2 
Query:  500 EVEAKQEIKAEEEWRVILHNDEIHTFDYVTQSITK 604
            E E+K E K EE+WRV+LHNDE+HTF+YV QS+ K
Sbjct:   89 ETESKAEEKNEEQWRVVLHNDEVHTFNYVIQSLCK 123
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7903.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LIY1_ECTSI6.960e-777.14ClpS domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A1Z5JEC0_FISSO1.500e-539.56ClpS domain-containing protein n=1 Tax=Fistulifera... [more]
A0A835ZHY3_9STRA3.850e-567.65Ribosomal protein L7/L12, C-terminal/adaptor prote... [more]
A0A835ZBL6_9STRA4.290e-565.71Ribosomal protein L7/L12, C-terminal/adaptor prote... [more]
A0A7S2WJ96_9STRA4.600e-565.71Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7903contigC-tenellus_contig7903:917..3217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size605
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionRibosomal protein L7/L12, C-terminal/adaptor protein ClpS-like
Ec32 orthologEc-20_001990.1
Cds size414
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790068.0950634-UTR-C-tenellus_contig7903:916..10191680790068.0950634-UTR-C-tenellus_contig7903:916..1019Choristocarpus tenellus KU2346UTRC-tenellus_contig7903 917..1019 -
1680790068.1077187-UTR-C-tenellus_contig7903:2229..22511680790068.1077187-UTR-C-tenellus_contig7903:2229..2251Choristocarpus tenellus KU2346UTRC-tenellus_contig7903 2230..2251 -
1680790068.1458893-UTR-C-tenellus_contig7903:3151..32171680790068.1458893-UTR-C-tenellus_contig7903:3151..3217Choristocarpus tenellus KU2346UTRC-tenellus_contig7903 3152..3217 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790068.1247-CDS-C-tenellus_contig7903:2251..24001680790068.1247-CDS-C-tenellus_contig7903:2251..2400Choristocarpus tenellus KU2346CDSC-tenellus_contig7903 2252..2400 -
1680790068.135182-CDS-C-tenellus_contig7903:2886..31511680790068.135182-CDS-C-tenellus_contig7903:2886..3151Choristocarpus tenellus KU2346CDSC-tenellus_contig7903 2887..3151 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7903.1.1prot_C-tenellus_contig7903.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7903 2252..3151 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7903.1.1

>prot_C-tenellus_contig7903.1.1 ID=prot_C-tenellus_contig7903.1.1|Name=mRNA_C-tenellus_contig7903.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=138bp
MPLGSSPCVQSFAFLTFAKRDVTTHRSETCGSFVGQIVVDRGMGPMWASF
RLAVLLLCLIAGRAFVVQPSARSRLAPSSTRAGWTRSSVSTVTGQGPASQ
GRVKSIVLMSSPGAAAGAKTGTKVLVKERVAEKVEVR*
back to top

mRNA from alignment at C-tenellus_contig7903:917..3217-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7903.1.1 ID=mRNA_C-tenellus_contig7903.1.1|Name=mRNA_C-tenellus_contig7903.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2301bp|location=Sequence derived from alignment at C-tenellus_contig7903:917..3217- (Choristocarpus tenellus KU2346)
ACATAACCAACAACCCACATAGTTTGTCGTTAACGGCTCTATGCCTTCTC
CACACAACAGCCTCACATGCCACTTGGCAGTTCACCTTGCGTTCAAAGTT
TTGCCTTTCTAACCTTTGCAAAGAGAGACGTAACTACCCATCGCAGTGAA
ACCTGCGGATCATTTGTAGGTCAAATCGTTGTTGACAGGGGGATGGGCCC
GATGTGGGCCTCATTCAGGTTGGCGGTCCTGCTGCTTTGCCTGATAGCTG
GACGCGCGTTCGTGGTTCAACCATCAGCAAGGTCACGTTTAGCACCCTCC
TCCACACGAGCAGGATGGACTCGATCATCTGGTGAGCAATCTGCATATGG
GGGAACTTTGTCTCTTTGATGTCACTCTTATTCATTGGTAAGGCATATGC
ATCCTTATCACCGTGGCGGGAGAAGAAATGACACGTGATGAGACGGTCCT
GTGGAAGCGACCGAAGTCCTGGGCTCCCCTGCAAAAGATAATATACCCAT
ACTATACCCCTGTATTCTAGGTCCTCTTTCTTGGTTCATCCAATGAATGT
CCAGTCACTATTAAGCTCGAACCGGAATCCGATGTGCCTGGGAATCATGA
ACTCCACGTGTAAGTTGCTCTAGTTGAACCCAGTGTAACTCTCCATCACG
GGCCAAGCTGTACCTGAATTAACTCTATTACGCGTGCTAGTAGTTTTTTT
CCACGAGGTTACGTTATCCTTTTTGCTCTCGCTTTTCTCTTACGATTTCC
TTTGTACTGCTGTTCCTGTCGTACTGACCAACCTGTTGGTGTGGGGTACC
GCCCGTCTTACTTGTAGTCTCCACTGTCACCGGTCAGGGGCCAGCTTCCC
AGGGGCGAGTGAAGTCAATTGTGTTGATGTCGTCCCCTGGAGCGGCTGCA
GGAGCGAAAACTGGGACCAAGGTCCTCGTGAAAGAGAGAGTTGCTGAGAA
AGTGGAGGTGCGTTGAACTTTTTCATGTCCTGCGGGAGGTGAGATATTGG
AAACGTGACCAAAGTATCTCATTATTCTCAATCACTGGCTCCCTGGTTGC
TACAAAGTTCATCCCCTAAACTATGTTCCCTTGATATGTCGCCACCGAAA
ATGAGGGGATGCGATATTGAAGGTGTTAGTTTAGTACTCTTAATTTGCAA
ATGATAAGGTGACTTCATGTGGGAAAAGGCGTGAAGCTTTGTGATACTCT
AGGAGGATTCATGTTGCTGCCTGTGTATATATATATATAAATATATAGGC
ACCCAACTTCTGGTATGGAGCGTGCGAGAGCGCATTTCTAAATGCAGTGT
GCACACACAGTTTTACATCGAAATCTATTCCTGCCTGGAAATCGAGGAAA
AACAGAAGGAACGATAACTCAAAGTATGTAGGTAGTTATCATAAACTCAA
AGGAAAGATGTGTAATAAAACTATTACAATTTATACTCAGGATCTATGCT
ATACTGTTGATTTCGTAGCGGTGATGCAGTTCTTTCAACATTCAAGATGA
TGGCAATAATGAAGTATACGTGGCTTAAAACTAAATCTCCCTATTGCTAT
GCTTGGATAGATGATGGGCACTATCAGGTATTCCAGGGTGGTGTGGTGCA
ACAGAGGGGATACATTTACTCAGATTATACGTGTAAGCACACCATGGAGC
ATATTCTACATTACACTGTAGGGTTGAGCCGAACCTCAAATAATATAGAC
CTACTATGTCATAGGGGCGAAGCTAAAAATTGTGAAGATAAAAATCTGTG
TAGGGTTGTAGGGGGTAAGAAATAAGTTGAAATAGCAGTATGTAGTTAGG
AGGAGGTTGCCCATTTTCAAGATGTGACCCTTTTTGTACCTTGTCCATCT
ATCTGCCTACATTTTGAATCAAGTGCATATAATATCTTTGAGAGAGGTGA
TTGCTTGCAGTGCAGCTCTGCATACAATTGATCGGTTGAAATGGTGTACC
AAAGGCCTTTTGTTATGTCATTGCTCATGTTGTGCTTCCGGTAGCTGTTA
CTGCTTTATGGTTGGTTTTAGTCCCTTATCATCCATTTAGTAGGTCTTTT
ATGGCGATCACTCAACTGTTTTGTTTTGTTTTCCTTGCCGATGAGTATCT
ATCTATCTGGTCCTTTCCCTTTGCCTCTGACTGTAGTTCTGTTTCTTTTG
GTGGTCCCCACAACGGTTTGTTCCGGTTTCTGACTCTGGTTATGTCAGGT
TGAGGCCAAGCAGGAGATTAAGGCAGAGGAGGAGTGGCGGGTGATCCTCC
ACAATGATGAAATTCACACCTTCGATTACGTCACCCAGTCCATCACCAAG
G
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig7903:917..3217-

>mRNA_C-tenellus_contig7903.1.1 ID=mRNA_C-tenellus_contig7903.1.1|Name=mRNA_C-tenellus_contig7903.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=414bp|location=Sequence derived from alignment at C-tenellus_contig7903:917..3217- (Choristocarpus tenellus KU2346)
ATGCCACTTGGCAGTTCACCTTGCGTTCAAAGTTTTGCCTTTCTAACCTT
TGCAAAGAGAGACGTAACTACCCATCGCAGTGAAACCTGCGGATCATTTG
TAGGTCAAATCGTTGTTGACAGGGGGATGGGCCCGATGTGGGCCTCATTC
AGGTTGGCGGTCCTGCTGCTTTGCCTGATAGCTGGACGCGCGTTCGTGGT
TCAACCATCAGCAAGGTCACGTTTAGCACCCTCCTCCACACGAGCAGGAT
GGACTCGATCATCTGTCTCCACTGTCACCGGTCAGGGGCCAGCTTCCCAG
GGGCGAGTGAAGTCAATTGTGTTGATGTCGTCCCCTGGAGCGGCTGCAGG
AGCGAAAACTGGGACCAAGGTCCTCGTGAAAGAGAGAGTTGCTGAGAAAG
TGGAGGTGCGTTGA
back to top