mRNA_C-tenellus_contig7846.2.2 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig7846.2.2 vs. uniprot
Match: D7FQR5_ECTSI (FAD binding / catalytic/ tRNA dihydrouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR5_ECTSI) HSP 1 Score: 397 bits (1021), Expect = 3.710e-135 Identity = 186/250 (74.40%), Postives = 217/250 (86.80%), Query Frame = 1 Query: 1 QVFSLAPMMDYTDKHMRFMLRLITKRTIMWTEMLAAGTLVHN-DNLERFLAYND-VEHPVVLQIGGSSPDDVREACRKARPYGYDAFNLNCGCPSEKVAGKGCFGAALMREPGLVSDLCNAMQEGSGGEVPVTVKCRIGVDNDDSYEQLAAFIDEVHRKAGTEHFIIHARKAILKGLSPDQNRKIPPLKYNYVYRLVEDFPSIDFTLNGGVNTYEEALSCLENGAHGVMVGRGFMNQPWYWAQADTKLFG 744 +VFSLAPMM+YTD+HMR++LRL+T RT++WTEM+ + T++HN D+L RFL YN+ VEHPVVLQIGGS DVREACR ARPY YDA NLNCGCPSEKVAGKG FGAALMR P LV DLC AM++G+G + P+TVKCRIGVDNDDSYEQLAAF++EV R AG HFI+HARKAIL GLSP QNR IPPLKY++VYRLV+DFP +DFTLNGGVNTYEEA+SCLE GAHGVMVGR + + PWYW+QAD+ LFG Sbjct: 80 EVFSLAPMMEYTDRHMRYLLRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLAAFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFVYRLVKDFPDVDFTLNGGVNTYEEAVSCLEQGAHGVMVGRSWSSNPWYWSQADSMLFG 329
BLAST of mRNA_C-tenellus_contig7846.2.2 vs. uniprot
Match: A0A836CCW1_9STRA (tRNA-dihydrouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCW1_9STRA) HSP 1 Score: 345 bits (885), Expect = 5.770e-116 Identity = 164/250 (65.60%), Postives = 198/250 (79.20%), Query Frame = 1 Query: 1 QVFSLAPMMDYTDKHMRFMLRLITKRTIMWTEMLAAGTLVHN-DNLERFLAYND-VEHPVVLQIGGSSPDDVREACRKARPYGYDAFNLNCGCPSEKVAGKGCFGAALMREPGLVSDLCNAMQEGSGGEVPVTVKCRIGVDNDDSYEQLAAFIDEVHRKAGTEHFIIHARKAILKGLSPDQNRKIPPLKYNYVYRLVEDFPSIDFTLNGGVNTYEEALSCLENGAHGVMVGRGFMNQPWYWAQADTKLFG 744 Q SLAPMM+YTD+HMR+MLRL TK+ +MWTEM+ G++VHN D+L+R L Y+ EHPVVLQ+GGS P+ VR AC ARPY YD NLN GCPSE+VAGKG FGAALMREP LV+D+C AM+EGSGG +VKCRIGVD++DSY LA F+D V R G FI+HARKAILKGLSP+QNRK+PPLKY+YVYRLV DFP + FTLNGGV TY L+ GAHGVMVGR + +PWYW+Q+D+++FG Sbjct: 8 QRLSLAPMMEYTDRHMRYMLRLYTKKMVMWTEMIPIGSIVHNADDLDRILGYDQSCEHPVVLQLGGSDPELVRTACELARPYQYDQINLNVGCPSERVAGKGAFGAALMREPRLVADICAAMREGSGG-AQTSVKCRIGVDDEDSYASLARFVDVVARGGGVSDFIVHARKAILKGLSPEQNRKVPPLKYDYVYRLVRDFPELSFTLNGGVTTYAGVQEALDGGAHGVMVGRAVLERPWYWSQSDSRVFG 256
BLAST of mRNA_C-tenellus_contig7846.2.2 vs. uniprot
Match: A0A4D9D156_9STRA (tRNA-dihydrouridine synthase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D156_9STRA) HSP 1 Score: 328 bits (840), Expect = 4.540e-109 Identity = 152/247 (61.54%), Postives = 195/247 (78.95%), Query Frame = 1 Query: 10 SLAPMMDYTDKHMRFMLRLITKRTIMWTEMLAAGTLVHND-NLERFLAYND-VEHPVVLQIGGSSPDDVREACRKARPYGYDAFNLNCGCPSEKVAGKGCFGAALMREPGLVSDLCNAMQEGSGGEVPVTVKCRIGVDNDDSYEQLAAFIDEVHRKAGTEHFIIHARKAILKGLSPDQNRKIPPLKYNYVYRLVEDFPSIDFTLNGGVNTYEEALSCLENGAHGVMVGRGFMNQPWYWAQADTKLFG 744 SLAPMM+YTD+H+RF+LRL++KR +++TEM+ A TL HN+ + +RFL +N EHPVVLQ+GGS P + EA R A PY Y+A NLNCGCPSE+V+GKGCFGAALMREP V++LC AM EGS G++PVTVKCRIGVD+DDSYEQLA F++ V + HF++HARKAIL GLSPDQNR++PPLKY +VYRL +FP + FTLNGGV +YE+ L G HGVM+GR + +P+YW+ D ++FG Sbjct: 26 SLAPMMEYTDRHLRFLLRLLSKRMVLYTEMITAPTLYHNEESRDRFLRFNSPAEHPVVLQLGGSDPGQLAEASRLASPYKYNAMNLNCGCPSERVSGKGCFGAALMREPERVAELCTAMSEGSRGKIPVTVKCRIGVDDDDSYEQLAHFVETVSGASPVRHFLVHARKAILGGLSPDQNRRVPPLKYPFVYRLSREFPHLRFTLNGGVLSYEDVAEHLREGVHGVMIGRAVVARPFYWSDVDARVFG 272
BLAST of mRNA_C-tenellus_contig7846.2.2 vs. uniprot
Match: A0A7S2C7I3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C7I3_9STRA) HSP 1 Score: 305 bits (782), Expect = 1.630e-99 Identity = 140/247 (56.68%), Postives = 190/247 (76.92%), Query Frame = 1 Query: 7 FSLAPMMDYTDKHMRFMLRLITKRTIMWTEMLAAGTLVHNDNLERFLAYND-VEHPVVLQIGGSSPDDVREACRKARPYGYDAFNLNCGCPSEKVAGKGCFGAALMREPGLVSDLCNAMQEGSGGEVPVTVKCRIGVDNDDSYEQLAAFIDEVHRKAGTEHFIIHARKAILKGLSPDQNRKIPPLKYNYVYRLVEDFPSIDFTLNGGVNTYEEALSCLENGAHGVMVGRGFMNQPWYWAQADTKLFG 744 FS+APMMDYTD+H R++LRL++ + +++TEM+ A TLVHN +++R+L +D VE+PVVLQ+GGS +D+R + ++A Y YD NLNCGCPS+KVAGKG FGA LM + V LC+AM + G P+TVKCRIGVD+ DSYEQLA F+ V + G EHFI+HARKAIL GLSP++NR+IPP+KY++VY+LV DFPS+ F++NG V TYE+ L G HGVMVGR + QPW W++ D++++G Sbjct: 76 FSVAPMMDYTDRHFRYLLRLLSSKAVLYTEMVGASTLVHNPDIDRWLRLSDDVENPVVLQLGGSDCEDLRTSVKRASAYNYDEINLNCGCPSDKVAGKGSFGATLMLDAKRVGQLCDAMAQECGK--PITVKCRIGVDDQDSYEQLAEFVGTVSQTGGVEHFIVHARKAILGGLSPEENRRIPPIKYDHVYQLVADFPSLRFSMNGEVKTYEDVSEHLSRGLHGVMVGRSVIEQPWLWSEVDSRIYG 320
BLAST of mRNA_C-tenellus_contig7846.2.2 vs. uniprot
Match: A0A7S3USD9_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USD9_HETAK) HSP 1 Score: 303 bits (775), Expect = 1.650e-98 Identity = 148/251 (58.96%), Postives = 188/251 (74.90%), Query Frame = 1 Query: 1 QVFSLAPMMDYTDKHMRFMLRLITKRTIMWTEMLAAGTLVHN--DNLERFLAYND-VEHPVVLQIGGSSPDDVREACRKARPYGYDAFNLNCGCPSEKVAGKGCFGAALMREPGLVSDLCNAMQEGSGGEVPVTVKCRIGVDNDDSYEQLAAFIDEVHRKAGTEHFIIHARKAILKGLSPDQNRKIPPLKYNYVYRLVEDFPSIDFTLNGGVNTYEEALSCLENGAHGVMVGRGFMNQPWYWAQADTKLFG 744 ++FSLAPMMDYTD+HMRF++RL++K +++TEM+A+GT+V+N + L R+L Y++ EHPVVLQ+GGS P ++R A +A PY YDA NLNCGCPSEKVAGKGCFGAALMRE LV DLC M + + PVTVK RIGVD++DSYE L FI+ V ++ HFI+HAR AIL GLSP QNR+IPPLKY+YVY LV+D+P FT+NGG+ YEE L G HGVMVGR P+ W+Q D ++G Sbjct: 50 ELFSLAPMMDYTDRHMRFLMRLLSKDMVLYTEMIASGTIVNNPENELGRWLDYSESCEHPVVLQLGGSDPGELRRAAARAAPYRYDAVNLNCGCPSEKVAGKGCFGAALMREAELVGDLCRGMA--AELDCPVTVKSRIGVDDEDSYEGLCNFIETVADRSPVRHFIVHARTAILGGLSPAQNRQIPPLKYDYVYNLVKDYPEFQFTINGGITEYEEIREHLGRGVHGVMVGRAINADPYKWSQVDELVYG 298
BLAST of mRNA_C-tenellus_contig7846.2.2 vs. uniprot
Match: A0A7S0D9F4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D9F4_9EUKA) HSP 1 Score: 291 bits (746), Expect = 5.640e-94 Identity = 143/249 (57.43%), Postives = 180/249 (72.29%), Query Frame = 1 Query: 7 FSLAPMMDYTDKHMRFMLRLITKRTIMWTEMLAAGTLVHNDNLERFLAYND-VEHPVVLQIGGSSPDDVREACRKARPYGYDAFNLNCGCPSEKVAGKGCFGAALMREPGLVSDLCNAM-QEGSGGEVPVTVKCRIGVDNDDSYEQLAAFIDEVHRKAGTEHFIIHARKAILK-GLSPDQNRKIPPLKYNYVYRLVEDFPSIDFTLNGGVNTYEEALSCLENGAHGVMVGRGFMNQPWYWAQADTKLFG 744 FS+APMMDYTD+H RF+LR+ITK+ ++TEM+ + L+H D +R L Y+D +EHPV LQ+GGS PD + + +KA PY YDA NLNCGCPS+KV+G+G FGAALM+EP + LC +M Q+ + + PV+VKCRIGVD +D Y L F+ + G HFIIHARKAIL LSP QNR+IPPLKY YV+RLV DFPS F LNGGV + EEA L+ G GVMVGR +N+PWYW D +LFG Sbjct: 106 FSVAPMMDYTDRHFRFLLRMITKKAWLYTEMITSEALIHGD-ADRLLRYHDPIEHPVALQLGGSDPDSLAKGVKKALPYAYDAINLNCGCPSDKVSGRGSFGAALMKEPDYTAVLCESMIQQAAATDTPVSVKCRIGVDENDDYHYLKQFVTALG-DVGVRHFIIHARKAILNMNLSPKQNREIPPLKYQYVHRLVVDFPSYSFVLNGGVKSLEEADEFLKAGVAGVMVGREIINRPWYWGDVDRRLFG 352
BLAST of mRNA_C-tenellus_contig7846.2.2 vs. uniprot
Match: A0A7R9YB36_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YB36_9STRA) HSP 1 Score: 290 bits (743), Expect = 1.800e-93 Identity = 137/251 (54.58%), Postives = 186/251 (74.10%), Query Frame = 1 Query: 4 VFSLAPMMDYTDKHMRFMLRLITKRTIMWTEMLAAGTLVHNDN---LERFLAYNDVEHPVVLQIGGSSPDDVREACRKARPYGYDAFNLNCGCPSEKVAGKGCFGAALMREPGLVSDLCNAMQEGSGGEVPVTVKCRIGVDNDDSYEQLAAFIDEVHRKAGTEHFIIHARKAIL-KGLSPDQNRKIPPLKYNYVYRLVEDFPSIDFTLNGGVNTYEEALSCLENGAHGVMVGRGFMNQPWYWAQADTKLFG 744 +FS+APMMDYTD+H RF+ RL++K T++WTEM+ A +VH + L+RFLAY+ E P+VLQ+GGS PD VR A R A +GYD NLNCGCPSE+VAGKGCFGAALMRE LV+D+ A+QEG G +P +VKCR+GVD DSY++ F+ +H +AG EHF++HARKA+L K +P+ NRKIP L+Y+ V RL++D P + T+NGG+ T+EE LE G GVM+GR + +P+YW++ D ++G Sbjct: 68 LFSVAPMMDYTDRHFRFLFRLLSKETVLWTEMVTAQKVVHAPDDALLDRFLAYSPQEEPLVLQLGGSDPDVVRGAARIASDFGYDEVNLNCGCPSERVAGKGCFGAALMREKDLVADIMQAVQEGMPG-LPASVKCRVGVDEMDSYDEFRDFVATIHERAGVEHFVVHARKALLGKKFTPEDNRKIPKLQYDRVLRLMQDMPQLRVTINGGITTFEEIDRFLEAGCSGVMIGRAAIYRPFYWSRVDELVYG 317
BLAST of mRNA_C-tenellus_contig7846.2.2 vs. uniprot
Match: A0A0G4ELS3_VITBC (tRNA-dihydrouridine synthase n=2 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ELS3_VITBC) HSP 1 Score: 283 bits (725), Expect = 2.230e-91 Identity = 147/262 (56.11%), Postives = 184/262 (70.23%), Query Frame = 1 Query: 7 FSLAPMMDYTDKHMRFMLRLITKRTIMWTEMLAAGTLVHNDN-----------LERFLAYN--DVEHPVVLQIGGSSPDDVREACRKARPYG-YDAFNLNCGCPSEKVAGKGCFGAALMREPGLVSDLCNAMQEGSGGEVPVTVKCRIGVDNDDSYEQLAAFIDEVHRKAGTEHFIIHARKAILKGLSPDQNRKIPPLKYNYVYRLVEDFPSIDFTLNGGVNTYEEALSCLEN--GAHGVMVGRGFMNQPWYWAQADTKLFG 744 FS+APMMDYTDKH RF++RL+T+ ++TEM+AA L + + + R LA N +E P VLQ+GGS PD + EA R A Y + NLNCGCPSE+VAGKG FGAALMREP LV++LC AM++G G P TVKCRIGVD+ DS+E+L FI V +AG HFIIH+RKAIL GLSP+QNRKIPPL Y YVYRLVE FP + FTLNGGV TYE+ E GVMVGR +++P+YW++ D++L+G Sbjct: 21 FSVAPMMDYTDKHFRFLMRLLTRNATLYTEMMAANALHYTNRQAAADATADSMIPRSLATNAESIESPCVLQLGGSDPDVLAEASRTASAYHPFTELNLNCGCPSERVAGKGAFGAALMREPALVAELCKAMRQGGGR--PTTVKCRIGVDDQDSFEELQRFISTVAERAGVSHFIIHSRKAILTGLSPEQNRKIPPLIYEYVYRLVEGFPGLRFTLNGGVLTYEDIDMHFERCPTLTGVMVGRAVLDRPFYWSEVDSRLYG 280
BLAST of mRNA_C-tenellus_contig7846.2.2 vs. uniprot
Match: UPI0007EF1DE7 (tRNA-dihydrouridine(20/20a) synthase n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF1DE7) HSP 1 Score: 282 bits (721), Expect = 2.700e-90 Identity = 137/249 (55.02%), Postives = 176/249 (70.68%), Query Frame = 1 Query: 4 VFSLAPMMDYTDKHMRFMLRLITKRTIMWTEMLAAGTLVHN-DNLERFLAYNDVEHPVVLQIGGSSPDDVREACRKARPYGYDAFNLNCGCPSEKVAGKGCFGAALMREPGLVSDLCNAMQEGSGGEVPVTVKCRIGVDNDDSYEQLAAFIDEVHRKAGTEHFIIHARKAILKGLSPDQNRKIPPLKYNYVYRLVEDFPSIDFTLNGGVNTYEEALSCLENGAHGVMVGRGFMNQPWY-WAQADTKLFG 744 +FS+APMMD+TD H R + RLI+K ++TEM+AA T+VH +NL+RFLAY +HP+VLQIGG+ D + A A PYGYD NLNCGCPS KVAG GCFG +LM EP LV++ + + + +VPV+VKCRIGVDN DSY +L FI EV K+ T+HFIIH+RKA+L G+SP NRKIPPLKY + Y L+ DFP + FT+NGG+ + E + GAHGVMVGR N PW+ DT ++G Sbjct: 64 LFSVAPMMDWTDNHYRTLARLISKHAWLYTEMVAAETIVHQTENLDRFLAYTPEQHPIVLQIGGNKLDRLARATELANPYGYDEINLNCGCPSSKVAGHGCFGVSLMLEPKLVAEAMSVIA--ANCDVPVSVKCRIGVDNHDSYNELCDFISEVSAKSPTKHFIIHSRKALLNGISPADNRKIPPLKYEFYYALLRDFPDLMFTINGGIKSIAEVNAARREGAHGVMVGRAAYNNPWHALGHVDTAVYG 310
BLAST of mRNA_C-tenellus_contig7846.2.2 vs. uniprot
Match: A0A453BR81_AEGTS (tRNA-dihydrouridine synthase n=13 Tax=Triticinae TaxID=1648030 RepID=A0A453BR81_AEGTS) HSP 1 Score: 277 bits (708), Expect = 7.270e-90 Identity = 135/249 (54.22%), Postives = 177/249 (71.08%), Query Frame = 1 Query: 4 VFSLAPMMDYTDKHMRFMLRLITKRTIMWTEMLAAGTLVHN-DNLERFLAYNDVEHPVVLQIGGSSPDDVREACRKARPYGYDAFNLNCGCPSEKVAGKGCFGAALMREPGLVSDLCNAMQEGSGGEVPVTVKCRIGVDNDDSYEQLAAFIDEVHRKAGTEHFIIHARKAILKGLSPDQNRKIPPLKYNYVYRLVEDFPSIDFTLNGGVNTYEEALSCLENGAHGVMVGRGFMNQPWYW-AQADTKLFG 744 +FS+APMMD+TD H R + RLI++ ++TEM+ A T+VH D L+RFLA+ +HP+VLQIGGS+ D++ +A A Y YD NLNCGCPS KVAG GCFGA LM +P V D +A+ + +VPV+VKCRIGVD+ DSYE+L F+D+V K+ T HFIIHARKA+L GLSP +NRK+PPLKY Y Y L+ DFP + FTLNGG+ T E+ + + GAH VMVGR N PW D++++G Sbjct: 59 LFSVAPMMDWTDNHYRTLARLISRHAWLYTEMVVAETIVHQKDKLDRFLAFPAEQHPIVLQIGGSNLDNLAKATELASGYAYDEINLNCGCPSGKVAGHGCFGARLMYDPEFVGDAMSAIA--ANCDVPVSVKCRIGVDDRDSYEELCTFVDKVVSKSPTRHFIIHARKALLSGLSPAENRKVPPLKYEYYYALLRDFPEVHFTLNGGLTTIEQVSASIRQGAHQVMVGRAAYNNPWNMLGHVDSEIYG 305 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7846.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig7846.2.2 >prot_C-tenellus_contig7846.2.2 ID=prot_C-tenellus_contig7846.2.2|Name=mRNA_C-tenellus_contig7846.2.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=241bp MMDYTDKHMRFMLRLITKRTIMWTEMLAAGTLVHNDNLERFLAYNDVEHPback to top mRNA from alignment at C-tenellus_contig7846:4118..6047+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig7846.2.2 ID=mRNA_C-tenellus_contig7846.2.2|Name=mRNA_C-tenellus_contig7846.2.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1930bp|location=Sequence derived from alignment at C-tenellus_contig7846:4118..6047+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig7846:4118..6047+ >mRNA_C-tenellus_contig7846.2.2 ID=mRNA_C-tenellus_contig7846.2.2|Name=mRNA_C-tenellus_contig7846.2.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=723bp|location=Sequence derived from alignment at C-tenellus_contig7846:4118..6047+ (Choristocarpus tenellus KU2346)back to top |