mRNA_C-tenellus_contig7846.2.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7846.2.2
Unique NamemRNA_C-tenellus_contig7846.2.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7846.2.2 vs. uniprot
Match: D7FQR5_ECTSI (FAD binding / catalytic/ tRNA dihydrouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR5_ECTSI)

HSP 1 Score: 397 bits (1021), Expect = 3.710e-135
Identity = 186/250 (74.40%), Postives = 217/250 (86.80%), Query Frame = 1
Query:    1 QVFSLAPMMDYTDKHMRFMLRLITKRTIMWTEMLAAGTLVHN-DNLERFLAYND-VEHPVVLQIGGSSPDDVREACRKARPYGYDAFNLNCGCPSEKVAGKGCFGAALMREPGLVSDLCNAMQEGSGGEVPVTVKCRIGVDNDDSYEQLAAFIDEVHRKAGTEHFIIHARKAILKGLSPDQNRKIPPLKYNYVYRLVEDFPSIDFTLNGGVNTYEEALSCLENGAHGVMVGRGFMNQPWYWAQADTKLFG 744
            +VFSLAPMM+YTD+HMR++LRL+T RT++WTEM+ + T++HN D+L RFL YN+ VEHPVVLQIGGS   DVREACR ARPY YDA NLNCGCPSEKVAGKG FGAALMR P LV DLC AM++G+G + P+TVKCRIGVDNDDSYEQLAAF++EV R AG  HFI+HARKAIL GLSP QNR IPPLKY++VYRLV+DFP +DFTLNGGVNTYEEA+SCLE GAHGVMVGR + + PWYW+QAD+ LFG
Sbjct:   80 EVFSLAPMMEYTDRHMRYLLRLLTTRTVLWTEMVPSSTIIHNPDDLGRFLDYNEEVEHPVVLQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDLCLAMKDGAGEDTPITVKCRIGVDNDDSYEQLAAFVEEVSRGAGVPHFIVHARKAILGGLSPAQNRNIPPLKYDFVYRLVKDFPDVDFTLNGGVNTYEEAVSCLEQGAHGVMVGRSWSSNPWYWSQADSMLFG 329          
BLAST of mRNA_C-tenellus_contig7846.2.2 vs. uniprot
Match: A0A836CCW1_9STRA (tRNA-dihydrouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCW1_9STRA)

HSP 1 Score: 345 bits (885), Expect = 5.770e-116
Identity = 164/250 (65.60%), Postives = 198/250 (79.20%), Query Frame = 1
Query:    1 QVFSLAPMMDYTDKHMRFMLRLITKRTIMWTEMLAAGTLVHN-DNLERFLAYND-VEHPVVLQIGGSSPDDVREACRKARPYGYDAFNLNCGCPSEKVAGKGCFGAALMREPGLVSDLCNAMQEGSGGEVPVTVKCRIGVDNDDSYEQLAAFIDEVHRKAGTEHFIIHARKAILKGLSPDQNRKIPPLKYNYVYRLVEDFPSIDFTLNGGVNTYEEALSCLENGAHGVMVGRGFMNQPWYWAQADTKLFG 744
            Q  SLAPMM+YTD+HMR+MLRL TK+ +MWTEM+  G++VHN D+L+R L Y+   EHPVVLQ+GGS P+ VR AC  ARPY YD  NLN GCPSE+VAGKG FGAALMREP LV+D+C AM+EGSGG    +VKCRIGVD++DSY  LA F+D V R  G   FI+HARKAILKGLSP+QNRK+PPLKY+YVYRLV DFP + FTLNGGV TY      L+ GAHGVMVGR  + +PWYW+Q+D+++FG
Sbjct:    8 QRLSLAPMMEYTDRHMRYMLRLYTKKMVMWTEMIPIGSIVHNADDLDRILGYDQSCEHPVVLQLGGSDPELVRTACELARPYQYDQINLNVGCPSERVAGKGAFGAALMREPRLVADICAAMREGSGG-AQTSVKCRIGVDDEDSYASLARFVDVVARGGGVSDFIVHARKAILKGLSPEQNRKVPPLKYDYVYRLVRDFPELSFTLNGGVTTYAGVQEALDGGAHGVMVGRAVLERPWYWSQSDSRVFG 256          
BLAST of mRNA_C-tenellus_contig7846.2.2 vs. uniprot
Match: A0A4D9D156_9STRA (tRNA-dihydrouridine synthase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D156_9STRA)

HSP 1 Score: 328 bits (840), Expect = 4.540e-109
Identity = 152/247 (61.54%), Postives = 195/247 (78.95%), Query Frame = 1
Query:   10 SLAPMMDYTDKHMRFMLRLITKRTIMWTEMLAAGTLVHND-NLERFLAYND-VEHPVVLQIGGSSPDDVREACRKARPYGYDAFNLNCGCPSEKVAGKGCFGAALMREPGLVSDLCNAMQEGSGGEVPVTVKCRIGVDNDDSYEQLAAFIDEVHRKAGTEHFIIHARKAILKGLSPDQNRKIPPLKYNYVYRLVEDFPSIDFTLNGGVNTYEEALSCLENGAHGVMVGRGFMNQPWYWAQADTKLFG 744
            SLAPMM+YTD+H+RF+LRL++KR +++TEM+ A TL HN+ + +RFL +N   EHPVVLQ+GGS P  + EA R A PY Y+A NLNCGCPSE+V+GKGCFGAALMREP  V++LC AM EGS G++PVTVKCRIGVD+DDSYEQLA F++ V   +   HF++HARKAIL GLSPDQNR++PPLKY +VYRL  +FP + FTLNGGV +YE+    L  G HGVM+GR  + +P+YW+  D ++FG
Sbjct:   26 SLAPMMEYTDRHLRFLLRLLSKRMVLYTEMITAPTLYHNEESRDRFLRFNSPAEHPVVLQLGGSDPGQLAEASRLASPYKYNAMNLNCGCPSERVSGKGCFGAALMREPERVAELCTAMSEGSRGKIPVTVKCRIGVDDDDSYEQLAHFVETVSGASPVRHFLVHARKAILGGLSPDQNRRVPPLKYPFVYRLSREFPHLRFTLNGGVLSYEDVAEHLREGVHGVMIGRAVVARPFYWSDVDARVFG 272          
BLAST of mRNA_C-tenellus_contig7846.2.2 vs. uniprot
Match: A0A7S2C7I3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C7I3_9STRA)

HSP 1 Score: 305 bits (782), Expect = 1.630e-99
Identity = 140/247 (56.68%), Postives = 190/247 (76.92%), Query Frame = 1
Query:    7 FSLAPMMDYTDKHMRFMLRLITKRTIMWTEMLAAGTLVHNDNLERFLAYND-VEHPVVLQIGGSSPDDVREACRKARPYGYDAFNLNCGCPSEKVAGKGCFGAALMREPGLVSDLCNAMQEGSGGEVPVTVKCRIGVDNDDSYEQLAAFIDEVHRKAGTEHFIIHARKAILKGLSPDQNRKIPPLKYNYVYRLVEDFPSIDFTLNGGVNTYEEALSCLENGAHGVMVGRGFMNQPWYWAQADTKLFG 744
            FS+APMMDYTD+H R++LRL++ + +++TEM+ A TLVHN +++R+L  +D VE+PVVLQ+GGS  +D+R + ++A  Y YD  NLNCGCPS+KVAGKG FGA LM +   V  LC+AM +  G   P+TVKCRIGVD+ DSYEQLA F+  V +  G EHFI+HARKAIL GLSP++NR+IPP+KY++VY+LV DFPS+ F++NG V TYE+    L  G HGVMVGR  + QPW W++ D++++G
Sbjct:   76 FSVAPMMDYTDRHFRYLLRLLSSKAVLYTEMVGASTLVHNPDIDRWLRLSDDVENPVVLQLGGSDCEDLRTSVKRASAYNYDEINLNCGCPSDKVAGKGSFGATLMLDAKRVGQLCDAMAQECGK--PITVKCRIGVDDQDSYEQLAEFVGTVSQTGGVEHFIVHARKAILGGLSPEENRRIPPIKYDHVYQLVADFPSLRFSMNGEVKTYEDVSEHLSRGLHGVMVGRSVIEQPWLWSEVDSRIYG 320          
BLAST of mRNA_C-tenellus_contig7846.2.2 vs. uniprot
Match: A0A7S3USD9_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USD9_HETAK)

HSP 1 Score: 303 bits (775), Expect = 1.650e-98
Identity = 148/251 (58.96%), Postives = 188/251 (74.90%), Query Frame = 1
Query:    1 QVFSLAPMMDYTDKHMRFMLRLITKRTIMWTEMLAAGTLVHN--DNLERFLAYND-VEHPVVLQIGGSSPDDVREACRKARPYGYDAFNLNCGCPSEKVAGKGCFGAALMREPGLVSDLCNAMQEGSGGEVPVTVKCRIGVDNDDSYEQLAAFIDEVHRKAGTEHFIIHARKAILKGLSPDQNRKIPPLKYNYVYRLVEDFPSIDFTLNGGVNTYEEALSCLENGAHGVMVGRGFMNQPWYWAQADTKLFG 744
            ++FSLAPMMDYTD+HMRF++RL++K  +++TEM+A+GT+V+N  + L R+L Y++  EHPVVLQ+GGS P ++R A  +A PY YDA NLNCGCPSEKVAGKGCFGAALMRE  LV DLC  M   +  + PVTVK RIGVD++DSYE L  FI+ V  ++   HFI+HAR AIL GLSP QNR+IPPLKY+YVY LV+D+P   FT+NGG+  YEE    L  G HGVMVGR     P+ W+Q D  ++G
Sbjct:   50 ELFSLAPMMDYTDRHMRFLMRLLSKDMVLYTEMIASGTIVNNPENELGRWLDYSESCEHPVVLQLGGSDPGELRRAAARAAPYRYDAVNLNCGCPSEKVAGKGCFGAALMREAELVGDLCRGMA--AELDCPVTVKSRIGVDDEDSYEGLCNFIETVADRSPVRHFIVHARTAILGGLSPAQNRQIPPLKYDYVYNLVKDYPEFQFTINGGITEYEEIREHLGRGVHGVMVGRAINADPYKWSQVDELVYG 298          
BLAST of mRNA_C-tenellus_contig7846.2.2 vs. uniprot
Match: A0A7S0D9F4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D9F4_9EUKA)

HSP 1 Score: 291 bits (746), Expect = 5.640e-94
Identity = 143/249 (57.43%), Postives = 180/249 (72.29%), Query Frame = 1
Query:    7 FSLAPMMDYTDKHMRFMLRLITKRTIMWTEMLAAGTLVHNDNLERFLAYND-VEHPVVLQIGGSSPDDVREACRKARPYGYDAFNLNCGCPSEKVAGKGCFGAALMREPGLVSDLCNAM-QEGSGGEVPVTVKCRIGVDNDDSYEQLAAFIDEVHRKAGTEHFIIHARKAILK-GLSPDQNRKIPPLKYNYVYRLVEDFPSIDFTLNGGVNTYEEALSCLENGAHGVMVGRGFMNQPWYWAQADTKLFG 744
            FS+APMMDYTD+H RF+LR+ITK+  ++TEM+ +  L+H D  +R L Y+D +EHPV LQ+GGS PD + +  +KA PY YDA NLNCGCPS+KV+G+G FGAALM+EP   + LC +M Q+ +  + PV+VKCRIGVD +D Y  L  F+  +    G  HFIIHARKAIL   LSP QNR+IPPLKY YV+RLV DFPS  F LNGGV + EEA   L+ G  GVMVGR  +N+PWYW   D +LFG
Sbjct:  106 FSVAPMMDYTDRHFRFLLRMITKKAWLYTEMITSEALIHGD-ADRLLRYHDPIEHPVALQLGGSDPDSLAKGVKKALPYAYDAINLNCGCPSDKVSGRGSFGAALMKEPDYTAVLCESMIQQAAATDTPVSVKCRIGVDENDDYHYLKQFVTALG-DVGVRHFIIHARKAILNMNLSPKQNREIPPLKYQYVHRLVVDFPSYSFVLNGGVKSLEEADEFLKAGVAGVMVGREIINRPWYWGDVDRRLFG 352          
BLAST of mRNA_C-tenellus_contig7846.2.2 vs. uniprot
Match: A0A7R9YB36_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YB36_9STRA)

HSP 1 Score: 290 bits (743), Expect = 1.800e-93
Identity = 137/251 (54.58%), Postives = 186/251 (74.10%), Query Frame = 1
Query:    4 VFSLAPMMDYTDKHMRFMLRLITKRTIMWTEMLAAGTLVHNDN---LERFLAYNDVEHPVVLQIGGSSPDDVREACRKARPYGYDAFNLNCGCPSEKVAGKGCFGAALMREPGLVSDLCNAMQEGSGGEVPVTVKCRIGVDNDDSYEQLAAFIDEVHRKAGTEHFIIHARKAIL-KGLSPDQNRKIPPLKYNYVYRLVEDFPSIDFTLNGGVNTYEEALSCLENGAHGVMVGRGFMNQPWYWAQADTKLFG 744
            +FS+APMMDYTD+H RF+ RL++K T++WTEM+ A  +VH  +   L+RFLAY+  E P+VLQ+GGS PD VR A R A  +GYD  NLNCGCPSE+VAGKGCFGAALMRE  LV+D+  A+QEG  G +P +VKCR+GVD  DSY++   F+  +H +AG EHF++HARKA+L K  +P+ NRKIP L+Y+ V RL++D P +  T+NGG+ T+EE    LE G  GVM+GR  + +P+YW++ D  ++G
Sbjct:   68 LFSVAPMMDYTDRHFRFLFRLLSKETVLWTEMVTAQKVVHAPDDALLDRFLAYSPQEEPLVLQLGGSDPDVVRGAARIASDFGYDEVNLNCGCPSERVAGKGCFGAALMREKDLVADIMQAVQEGMPG-LPASVKCRVGVDEMDSYDEFRDFVATIHERAGVEHFVVHARKALLGKKFTPEDNRKIPKLQYDRVLRLMQDMPQLRVTINGGITTFEEIDRFLEAGCSGVMIGRAAIYRPFYWSRVDELVYG 317          
BLAST of mRNA_C-tenellus_contig7846.2.2 vs. uniprot
Match: A0A0G4ELS3_VITBC (tRNA-dihydrouridine synthase n=2 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ELS3_VITBC)

HSP 1 Score: 283 bits (725), Expect = 2.230e-91
Identity = 147/262 (56.11%), Postives = 184/262 (70.23%), Query Frame = 1
Query:    7 FSLAPMMDYTDKHMRFMLRLITKRTIMWTEMLAAGTLVHNDN-----------LERFLAYN--DVEHPVVLQIGGSSPDDVREACRKARPYG-YDAFNLNCGCPSEKVAGKGCFGAALMREPGLVSDLCNAMQEGSGGEVPVTVKCRIGVDNDDSYEQLAAFIDEVHRKAGTEHFIIHARKAILKGLSPDQNRKIPPLKYNYVYRLVEDFPSIDFTLNGGVNTYEEALSCLEN--GAHGVMVGRGFMNQPWYWAQADTKLFG 744
            FS+APMMDYTDKH RF++RL+T+   ++TEM+AA  L + +            + R LA N   +E P VLQ+GGS PD + EA R A  Y  +   NLNCGCPSE+VAGKG FGAALMREP LV++LC AM++G G   P TVKCRIGVD+ DS+E+L  FI  V  +AG  HFIIH+RKAIL GLSP+QNRKIPPL Y YVYRLVE FP + FTLNGGV TYE+     E      GVMVGR  +++P+YW++ D++L+G
Sbjct:   21 FSVAPMMDYTDKHFRFLMRLLTRNATLYTEMMAANALHYTNRQAAADATADSMIPRSLATNAESIESPCVLQLGGSDPDVLAEASRTASAYHPFTELNLNCGCPSERVAGKGAFGAALMREPALVAELCKAMRQGGGR--PTTVKCRIGVDDQDSFEELQRFISTVAERAGVSHFIIHSRKAILTGLSPEQNRKIPPLIYEYVYRLVEGFPGLRFTLNGGVLTYEDIDMHFERCPTLTGVMVGRAVLDRPFYWSEVDSRLYG 280          
BLAST of mRNA_C-tenellus_contig7846.2.2 vs. uniprot
Match: UPI0007EF1DE7 (tRNA-dihydrouridine(20/20a) synthase n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF1DE7)

HSP 1 Score: 282 bits (721), Expect = 2.700e-90
Identity = 137/249 (55.02%), Postives = 176/249 (70.68%), Query Frame = 1
Query:    4 VFSLAPMMDYTDKHMRFMLRLITKRTIMWTEMLAAGTLVHN-DNLERFLAYNDVEHPVVLQIGGSSPDDVREACRKARPYGYDAFNLNCGCPSEKVAGKGCFGAALMREPGLVSDLCNAMQEGSGGEVPVTVKCRIGVDNDDSYEQLAAFIDEVHRKAGTEHFIIHARKAILKGLSPDQNRKIPPLKYNYVYRLVEDFPSIDFTLNGGVNTYEEALSCLENGAHGVMVGRGFMNQPWY-WAQADTKLFG 744
            +FS+APMMD+TD H R + RLI+K   ++TEM+AA T+VH  +NL+RFLAY   +HP+VLQIGG+  D +  A   A PYGYD  NLNCGCPS KVAG GCFG +LM EP LV++  + +   +  +VPV+VKCRIGVDN DSY +L  FI EV  K+ T+HFIIH+RKA+L G+SP  NRKIPPLKY + Y L+ DFP + FT+NGG+ +  E  +    GAHGVMVGR   N PW+     DT ++G
Sbjct:   64 LFSVAPMMDWTDNHYRTLARLISKHAWLYTEMVAAETIVHQTENLDRFLAYTPEQHPIVLQIGGNKLDRLARATELANPYGYDEINLNCGCPSSKVAGHGCFGVSLMLEPKLVAEAMSVIA--ANCDVPVSVKCRIGVDNHDSYNELCDFISEVSAKSPTKHFIIHSRKALLNGISPADNRKIPPLKYEFYYALLRDFPDLMFTINGGIKSIAEVNAARREGAHGVMVGRAAYNNPWHALGHVDTAVYG 310          
BLAST of mRNA_C-tenellus_contig7846.2.2 vs. uniprot
Match: A0A453BR81_AEGTS (tRNA-dihydrouridine synthase n=13 Tax=Triticinae TaxID=1648030 RepID=A0A453BR81_AEGTS)

HSP 1 Score: 277 bits (708), Expect = 7.270e-90
Identity = 135/249 (54.22%), Postives = 177/249 (71.08%), Query Frame = 1
Query:    4 VFSLAPMMDYTDKHMRFMLRLITKRTIMWTEMLAAGTLVHN-DNLERFLAYNDVEHPVVLQIGGSSPDDVREACRKARPYGYDAFNLNCGCPSEKVAGKGCFGAALMREPGLVSDLCNAMQEGSGGEVPVTVKCRIGVDNDDSYEQLAAFIDEVHRKAGTEHFIIHARKAILKGLSPDQNRKIPPLKYNYVYRLVEDFPSIDFTLNGGVNTYEEALSCLENGAHGVMVGRGFMNQPWYW-AQADTKLFG 744
            +FS+APMMD+TD H R + RLI++   ++TEM+ A T+VH  D L+RFLA+   +HP+VLQIGGS+ D++ +A   A  Y YD  NLNCGCPS KVAG GCFGA LM +P  V D  +A+   +  +VPV+VKCRIGVD+ DSYE+L  F+D+V  K+ T HFIIHARKA+L GLSP +NRK+PPLKY Y Y L+ DFP + FTLNGG+ T E+  + +  GAH VMVGR   N PW      D++++G
Sbjct:   59 LFSVAPMMDWTDNHYRTLARLISRHAWLYTEMVVAETIVHQKDKLDRFLAFPAEQHPIVLQIGGSNLDNLAKATELASGYAYDEINLNCGCPSGKVAGHGCFGARLMYDPEFVGDAMSAIA--ANCDVPVSVKCRIGVDDRDSYEELCTFVDKVVSKSPTRHFIIHARKALLSGLSPAENRKVPPLKYEYYYALLRDFPEVHFTLNGGLTTIEQVSASIRQGAHQVMVGRAAYNNPWNMLGHVDSEIYG 305          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7846.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQR5_ECTSI3.710e-13574.40FAD binding / catalytic/ tRNA dihydrouridine synth... [more]
A0A836CCW1_9STRA5.770e-11665.60tRNA-dihydrouridine synthase n=1 Tax=Tribonema min... [more]
A0A4D9D156_9STRA4.540e-10961.54tRNA-dihydrouridine synthase n=3 Tax=Monodopsidace... [more]
A0A7S2C7I3_9STRA1.630e-9956.68Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3USD9_HETAK1.650e-9858.96Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A7S0D9F4_9EUKA5.640e-9457.43Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7R9YB36_9STRA1.800e-9354.58Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A0G4ELS3_VITBC2.230e-9156.11tRNA-dihydrouridine synthase n=2 Tax=Vitrella bras... [more]
UPI0007EF1DE72.700e-9055.02tRNA-dihydrouridine(20/20a) synthase n=1 Tax=Daucu... [more]
A0A453BR81_AEGTS7.270e-9054.22tRNA-dihydrouridine synthase n=13 Tax=Triticinae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7846contigC-tenellus_contig7846:4118..6047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FQR5
PFAMsDus
Model size744
Max annot lvl2759|Eukaryota
KEGG koko:K05539,ko:K05542
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.3e-131
EggNOG OGsCOG0042@1|root,KOG2335@2759|Eukaryota
Ec32 ortholog descriptionFAD binding / catalytic/ tRNA dihydrouridine synthase
Ec32 orthologEc-01_000230.1
EC1.3.1.88
DescriptiontRNA dihydrouridine synthase activity
Cds size723
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790064.5312102-UTR-C-tenellus_contig7846:4117..41381680790064.5312102-UTR-C-tenellus_contig7846:4117..4138Choristocarpus tenellus KU2346UTRC-tenellus_contig7846 4118..4138 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790064.5464203-CDS-C-tenellus_contig7846:4138..43001680790064.5464203-CDS-C-tenellus_contig7846:4138..4300Choristocarpus tenellus KU2346CDSC-tenellus_contig7846 4139..4300 +
1680790064.5580578-CDS-C-tenellus_contig7846:4795..50711680790064.5580578-CDS-C-tenellus_contig7846:4795..5071Choristocarpus tenellus KU2346CDSC-tenellus_contig7846 4796..5071 +
1680790064.5675704-CDS-C-tenellus_contig7846:5408..55911680790064.5675704-CDS-C-tenellus_contig7846:5408..5591Choristocarpus tenellus KU2346CDSC-tenellus_contig7846 5409..5591 +
1680790064.5773652-CDS-C-tenellus_contig7846:5945..60471680790064.5773652-CDS-C-tenellus_contig7846:5945..6047Choristocarpus tenellus KU2346CDSC-tenellus_contig7846 5946..6047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7846.2.2prot_C-tenellus_contig7846.2.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7846 4139..6047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7846.2.2

>prot_C-tenellus_contig7846.2.2 ID=prot_C-tenellus_contig7846.2.2|Name=mRNA_C-tenellus_contig7846.2.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=241bp
MMDYTDKHMRFMLRLITKRTIMWTEMLAAGTLVHNDNLERFLAYNDVEHP
VVLQIGGSSPDDVREACRKARPYGYDAFNLNCGCPSEKVAGKGCFGAALM
REPGLVSDLCNAMQEGSGGEVPVTVKCRIGVDNDDSYEQLAAFIDEVHRK
AGTEHFIIHARKAILKGLSPDQNRKIPPLKYNYVYRLVEDFPSIDFTLNG
GVNTYEEALSCLENGAHGVMVGRGFMNQPWYWAQADTKLFG
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mRNA from alignment at C-tenellus_contig7846:4118..6047+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7846.2.2 ID=mRNA_C-tenellus_contig7846.2.2|Name=mRNA_C-tenellus_contig7846.2.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1930bp|location=Sequence derived from alignment at C-tenellus_contig7846:4118..6047+ (Choristocarpus tenellus KU2346)
CAGGTGTTTTCTCTTGCCCCGATGATGGATTACACGGACAAGCACATGCG CTTCATGCTGCGCCTCATTACGAAACGGACGATCATGTGGACGGAAATGT TGGCTGCTGGCACTTTGGTCCACAATGACAACCTGGAGAGATTCTTGGCA TATAACGACGTGGAACACCCTGTTGTCTTGCAGGTGTTGATATCATTATG GAAACCGAGCTGTCTAAATGTAGTTATGCACAGCTTTTGGGATGACTCGT GGGCGCTACAGTTTCCCTCCATGACAAGAATTCTTGATCATTCGGTCCAA CCTGTGAAATGCACGACTGAGTACTCTATTTTGTTGCTATGATCTGCTGT AGTTGCAAGTAAATCAGTTGAGAAAACTCTTCCTAAGCGGGTCACCTCAT ATTTGCAGACCTTTTCACAGTCGAAGGATGAACACCAAGCAATACTATTG TTTCATCTCTGTTAAAAATGCTTTAGGCTTGCATGCTATGGAGGTAGGCA CCATCAATTAACATATCTACAAGACCTCATTATCCCGGTAAGACCTCCAC CCATTACGAAATCTTTCTTCAATGGGGACATAAGGATAAAAGTGTTGTTC CATTTGACTCGGGCGAGCTTGAGTCGGACGCAGTTATCCCACCCTTCTCC CAACCGTACGTACGCTGTATCTCGTCAGATTGGTGGTTCAAGCCCTGATG ATGTGCGCGAGGCGTGTCGTAAGGCCCGACCATACGGGTACGACGCTTTC AACCTAAACTGCGGGTGTCCAAGTGAGAAGGTAGCGGGTAAGGGCTGTTT CGGGGCAGCACTGATGCGAGAGCCAGGGCTGGTTTCAGATCTGTGCAATG CCATGCAGGAGGGAAGTGGGGGAGAAGTTCCAGTAACCGTGAAGTGTCGA ATAGGAGTGGACAATGACGACTCCTATGAGCAGTTGGCTGCTTTCATAGA TGAGGTGAAATTCCAATGTTTGAGTCCCCTGTACCTCAGAAGATTCTGTG TGGTGTCACATACTTGAGATATGAGTGATTGGATAGTGGTTCGCCTTGGG CAAGCTCATTCTTGCATGTTTGTTAATTAGCCGAACCTGAAGGTCCGCAA TACTGTATGCTTTGGAAGGCGGCTGAACTCCCCTTGTACCTCTCTTATTT GGCTGTTACTCACCTGTAGGGAACACATTCAGGAGAGGAAGTACAGTGTG CGAACATACTCACAGAATATCTCGCATTCCCCTTGGATCCAAAAGTTACA TTTAAGAGGTGTGATAGGTAACATATATCCCCTTCACCCAGGTACATCGA AAGGCAGGGACGGAGCACTTTATTATCCATGCTCGGAAGGCCATACTCAA GGGCCTGAGTCCGGACCAGAACAGGAAAATACCGCCACTTAAATACAATT ATGTGTACCGCCTGGTTGAGGACTTCCCTAGCATTGATTTCACCCTCAAC GGAGGCGTCAACACCTACGAGGAGGTGAGAGAATTGTTGCAAAAACAAAG TGAAAAACAGTATTTCGACGACAAGTAGATACCTTCAAGGCCACCTGAGG ATGCTCCCACGCAAACCCTGACTTATTGCTCAATAGGTAGAGTCCAAGAA AGACAGTGATCAACTGCTCCCAATTCCTATTCTTGACCCAAAGATAGACA AAAGTTTTTTTTTTTCTGCCACAGCACAGTCGAAACACCAAAAGCATTGA TCTAAACCCTCCCTACCCTAAATATATACCATATGCCAGTGCATGACTTC CTTCACACAAGCCTTTTCCCCATCATTTACGTTTGAGCAACCAATGAATA GACAATCACCCCCTCATACTCATGCCAGGCTTTGTCCTGCTTGGAAAATG GCGCTCATGGGGTCATGGTAGGTAGGGGCTTCATGAATCAGCCGTGGTAC TGGGCTCAAGCTGACACTAAGCTGTTTGGT
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Coding sequence (CDS) from alignment at C-tenellus_contig7846:4118..6047+

>mRNA_C-tenellus_contig7846.2.2 ID=mRNA_C-tenellus_contig7846.2.2|Name=mRNA_C-tenellus_contig7846.2.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=723bp|location=Sequence derived from alignment at C-tenellus_contig7846:4118..6047+ (Choristocarpus tenellus KU2346)
ATGATGGATTACACGGACAAGCACATGCGCTTCATGCTGCGCCTCATTAC
GAAACGGACGATCATGTGGACGGAAATGTTGGCTGCTGGCACTTTGGTCC
ACAATGACAACCTGGAGAGATTCTTGGCATATAACGACGTGGAACACCCT
GTTGTCTTGCAGATTGGTGGTTCAAGCCCTGATGATGTGCGCGAGGCGTG
TCGTAAGGCCCGACCATACGGGTACGACGCTTTCAACCTAAACTGCGGGT
GTCCAAGTGAGAAGGTAGCGGGTAAGGGCTGTTTCGGGGCAGCACTGATG
CGAGAGCCAGGGCTGGTTTCAGATCTGTGCAATGCCATGCAGGAGGGAAG
TGGGGGAGAAGTTCCAGTAACCGTGAAGTGTCGAATAGGAGTGGACAATG
ACGACTCCTATGAGCAGTTGGCTGCTTTCATAGATGAGGTACATCGAAAG
GCAGGGACGGAGCACTTTATTATCCATGCTCGGAAGGCCATACTCAAGGG
CCTGAGTCCGGACCAGAACAGGAAAATACCGCCACTTAAATACAATTATG
TGTACCGCCTGGTTGAGGACTTCCCTAGCATTGATTTCACCCTCAACGGA
GGCGTCAACACCTACGAGGAGGCTTTGTCCTGCTTGGAAAATGGCGCTCA
TGGGGTCATGGTAGGTAGGGGCTTCATGAATCAGCCGTGGTACTGGGCTC
AAGCTGACACTAAGCTGTTTGGT
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