mRNA_C-tenellus_contig7841.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7841.1.1
Unique NamemRNA_C-tenellus_contig7841.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7841.1.1 vs. uniprot
Match: A0A6H5JZE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZE1_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 2.260e-61
Identity = 96/117 (82.05%), Postives = 105/117 (89.74%), Query Frame = 1
Query:   22 QDAIKAYTECLDNIPSKTSPLAIKCYSNRSACYKQLSNFDGTVQDTSAVLEAEPNNVKALMRRAQAFEAIERYRFALQDVRTVLHMPMDQVGAANFQLANGMQHRLNRVVQQLKNSS 372
            QDAI  YTECLD++P K S LAIKCYSNRSACYKQLSNFD TV+DT+AVLE EP NVKAL+RRAQAFEAIERYRFALQDVRTVL MP ++VG+AN  LANGMQHRLNRVVQQLKN+S
Sbjct:   19 QDAIVKYTECLDSLPDKRSELAIKCYSNRSACYKQLSNFDATVEDTTAVLEVEPENVKALVRRAQAFEAIERYRFALQDVRTVLTMPPEKVGSANLSLANGMQHRLNRVVQQLKNAS 135          
BLAST of mRNA_C-tenellus_contig7841.1.1 vs. uniprot
Match: A0A836CLV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLV7_9STRA)

HSP 1 Score: 184 bits (466), Expect = 2.710e-55
Identity = 90/117 (76.92%), Postives = 101/117 (86.32%), Query Frame = 1
Query:   22 QDAIKAYTECLDNIPSKTSPLAIKCYSNRSACYKQLSNFDGTVQDTSAVLEAEPNNVKALMRRAQAFEAIERYRFALQDVRTVLHMPMDQVGAANFQLANGMQHRLNRVVQQLKNSS 372
            +DAIK YT+C+D +  +   LA+KC+SNRSACYKQLSNFDG ++DTSAVLE EP NVKAL+RRAQAFEAIERYR+ALQDVRTVL MP DQVGAAN  LANGMQHRLNRVVQQLK  S
Sbjct:  204 EDAIKKYTQCIDALGDRHHALALKCFSNRSACYKQLSNFDGVIEDTSAVLEVEPGNVKALVRRAQAFEAIERYRYALQDVRTVLAMPPDQVGAANISLANGMQHRLNRVVQQLKQDS 320          
BLAST of mRNA_C-tenellus_contig7841.1.1 vs. uniprot
Match: A0A6U1PBN3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PBN3_9STRA)

HSP 1 Score: 178 bits (452), Expect = 3.180e-55
Identity = 86/116 (74.14%), Postives = 101/116 (87.07%), Query Frame = 1
Query:   22 QDAIKAYTECLDNIPSKTSPLAIKCYSNRSACYKQLSNFDGTVQDTSAVLEAEPNNVKALMRRAQAFEAIERYRFALQDVRTVLHMPMDQVGAANFQLANGMQHRLNRVVQQLKNS 369
            ++AI  Y++CLD I +  S LAIKC+ NRSACYKQLSNFDG + D + VLE +PNNVK+L+RRAQAFEA ERYR+ALQDVRTVL MPMDQVG+AN+QLANGMQHRLNRVVQQLKN+
Sbjct:   46 EEAIDKYSKCLDAIGNSESELAIKCFLNRSACYKQLSNFDGVISDCTMVLEVDPNNVKSLVRRAQAFEACERYRYALQDVRTVLQMPMDQVGSANYQLANGMQHRLNRVVQQLKNN 161          
BLAST of mRNA_C-tenellus_contig7841.1.1 vs. uniprot
Match: A0A6V1KEM3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KEM3_HETAK)

HSP 1 Score: 176 bits (447), Expect = 1.970e-52
Identity = 86/117 (73.50%), Postives = 100/117 (85.47%), Query Frame = 1
Query:   22 QDAIKAYTECLDNIPSKTSPLAIKCYSNRSACYKQLSNFDGTVQDTSAVLEAEPNNVKALMRRAQAFEAIERYRFALQDVRTVLHMPMDQVGAANFQLANGMQHRLNRVVQQLKNSS 372
            + AI+ YT+CLD +  K+S LAIKCYSNRSACYKQLSNFDG + D + V+EA+P NVKAL+RRAQAFEA ERYRFALQDVRTVL  P + VG AN+QLANGMQHRLNRVVQQLK++S
Sbjct:  204 EGAIQKYTQCLDALSDKSSELAIKCYSNRSACYKQLSNFDGVISDCTMVIEAQPENVKALVRRAQAFEACERYRFALQDVRTVLAQPFELVGQANYQLANGMQHRLNRVVQQLKSAS 320          
BLAST of mRNA_C-tenellus_contig7841.1.1 vs. uniprot
Match: D7FPF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF1_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 7.190e-51
Identity = 88/117 (75.21%), Postives = 97/117 (82.91%), Query Frame = 1
Query:   22 QDAIKAYTECLDNIPSKTSPLAIKCYSNRSACYKQLSNFDGTVQDTSAVLEAEPNNVKALMRRAQAFEAIERYRFALQDVRTVLHMPMDQVGAANFQLANGMQHRLNRVVQQLKNSS 372
            +DAI  YTECLD++P K S LAIKCYSNRSACYKQLSNFD TV+DT+AVLE EP NVKAL+RRA        YRFALQDVRTVL MP D+VG+AN  LANGMQHRLNRVVQQLKN+S
Sbjct:  204 EDAIVKYTECLDSLPDKRSELAIKCYSNRSACYKQLSNFDATVEDTTAVLEVEPENVKALVRRA--------YRFALQDVRTVLTMPQDKVGSANLSLANGMQHRLNRVVQQLKNAS 312          
BLAST of mRNA_C-tenellus_contig7841.1.1 vs. uniprot
Match: A0A7S1CX05_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CX05_CYCTE)

HSP 1 Score: 163 bits (413), Expect = 2.730e-47
Identity = 79/115 (68.70%), Postives = 94/115 (81.74%), Query Frame = 1
Query:   28 AIKAYTECLDNIPSK---TSPLAIKCYSNRSACYKQLSNFDGTVQDTSAVLEAEPNNVKALMRRAQAFEAIERYRFALQDVRTVLHMPMDQVGAANFQLANGMQHRLNRVVQQLK 363
            AI+ YT+CLDN+  +    SPLA+K YSNR+ACYKQ+SNFDGT+ D + VLE EP NVKAL+RRAQAFE +ERYRFALQD++TVL MP  +VG +NF L NGMQHRLNR VQQLK
Sbjct:  206 AIEEYTKCLDNLQKEGKAESPLALKAYSNRAACYKQISNFDGTISDCTMVLEIEPENVKALIRRAQAFEGVERYRFALQDIKTVLSMPFAKVGKSNFDLCNGMQHRLNRTVQQLK 320          
BLAST of mRNA_C-tenellus_contig7841.1.1 vs. uniprot
Match: A0A7S3P6E4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6E4_9STRA)

HSP 1 Score: 162 bits (411), Expect = 5.720e-47
Identity = 81/117 (69.23%), Postives = 94/117 (80.34%), Query Frame = 1
Query:   22 QDAIKAYTECLDNIPSKT---SPLAIKCYSNRSACYKQLSNFDGTVQDTSAVLEAEPNNVKALMRRAQAFEAIERYRFALQDVRTVLHMPMDQVGAANFQLANGMQHRLNRVVQQLK 363
            ++AI  YT+CL  + SK    SPLA+K YSNR+ACYKQ+SNFDGT+ D +AVLE EP+NVKAL+RRAQAFE +ERYRFALQDV+TVL MP  QVG ANF L NGMQHRL R V QLK
Sbjct:  204 ENAIAEYTKCLKQLESKGQQGSPLAVKTYSNRAACYKQISNFDGTIADCTAVLEVEPDNVKALIRRAQAFEGVERYRFALQDVKTVLQMPSAQVGKANFDLCNGMQHRLQRTVNQLK 320          
BLAST of mRNA_C-tenellus_contig7841.1.1 vs. uniprot
Match: A0A7S2DVE1_9STRA (Hypothetical protein n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2DVE1_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.110e-46
Identity = 79/117 (67.52%), Postives = 96/117 (82.05%), Query Frame = 1
Query:   22 QDAIKAYTECLDNIPSK---TSPLAIKCYSNRSACYKQLSNFDGTVQDTSAVLEAEPNNVKALMRRAQAFEAIERYRFALQDVRTVLHMPMDQVGAANFQLANGMQHRLNRVVQQLK 363
            + AI+ YT+C+D + +     S LA+K YSNR+ACYKQ+SNFDGTV+D +AVLE +P NVKAL+RRAQA E +ERYRFALQD++TVL MP D+VG ANF LANGMQHRLNR VQQLK
Sbjct:  205 EGAIEEYTKCIDTLRADGKGQSELAMKAYSNRAACYKQISNFDGTVEDCTAVLEVDPENVKALIRRAQALEGLERYRFALQDIKTVLSMPFDKVGKANFDLANGMQHRLNRTVQQLK 321          
BLAST of mRNA_C-tenellus_contig7841.1.1 vs. uniprot
Match: A0A7S2VAY3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VAY3_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.890e-46
Identity = 77/116 (66.38%), Postives = 92/116 (79.31%), Query Frame = 1
Query:   22 QDAIKAYTECLDNIPS--KTSPLAIKCYSNRSACYKQLSNFDGTVQDTSAVLEAEPNNVKALMRRAQAFEAIERYRFALQDVRTVLHMPMDQVGAANFQLANGMQHRLNRVVQQLK 363
            + AI  YT+CLD +    K S LA+K  +NR+ACYKQ+SNFDGT++D +AVLE EP NVKAL+RRAQAFE +ERYRFALQDV+TVL MP  +VG ANF L NGMQHRL+R V QLK
Sbjct:   40 EPAIVEYTKCLDGLKGAEKQSELALKALANRAACYKQISNFDGTIEDCTAVLEVEPENVKALIRRAQAFEGVERYRFALQDVKTVLSMPYQKVGKANFDLCNGMQHRLSRTVAQLK 155          
BLAST of mRNA_C-tenellus_contig7841.1.1 vs. uniprot
Match: A0A7S3GT25_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GT25_9STRA)

HSP 1 Score: 157 bits (396), Expect = 8.730e-45
Identity = 75/115 (65.22%), Postives = 97/115 (84.35%), Query Frame = 1
Query:   22 QDAIKAYTECLDNIPSKTSPLAIKCYSNRSACYKQLSNFDGTVQDTSAVLEAEPNNVKALMRRAQAFEAIERYRFALQDVRTVLHMPMDQVGAANFQLANGMQHRLNRVVQQLKN 366
            + AIKAYT+CLD++  K+S LA+KCY+NR+AC+KQLSNF+GT+ D++AVLE +P++VKAL+RRAQAFEA ERY+ ALQDVR VL   +D VG   F LANGMQHRLN+V+ QL+N
Sbjct:  204 EGAIKAYTKCLDSMSDKSSELALKCYNNRAACHKQLSNFEGTISDSTAVLEYKPDDVKALVRRAQAFEACERYKSALQDVRQVLAFGVDVVGKPTFDLANGMQHRLNKVIAQLRN 318          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7841.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZE1_9PHAE2.260e-6182.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CLV7_9STRA2.710e-5576.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U1PBN3_9STRA3.180e-5574.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1KEM3_HETAK1.970e-5273.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FPF1_ECTSI7.190e-5175.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1CX05_CYCTE2.730e-4768.70Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S3P6E4_9STRA5.720e-4769.23Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2DVE1_9STRA1.110e-4667.52Hypothetical protein n=2 Tax=Lithodesmiaceae TaxID... [more]
A0A7S2VAY3_9STRA2.890e-4666.38Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3GT25_9STRA8.730e-4565.22Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7841contigC-tenellus_contig7841:313..1205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FPF1
PFAMsTPR_1,TPR_11,TPR_2,TPR_8
Model size375
Max annot lvl2759|Eukaryota
KEGG koko:K09553
KEGG Pathwayko05020,map05020
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.18e-51
EggNOG OGsCOG0457@1|root,KOG0548@2759|Eukaryota
Descriptionpositive regulation of catalytic activity in other organism involved in symbiotic interaction
Cds size375
COG categoryJ
BRITEko00000,ko00001,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790064.2042422-CDS-C-tenellus_contig7841:312..5481680790064.2042422-CDS-C-tenellus_contig7841:312..548Choristocarpus tenellus KU2346CDSC-tenellus_contig7841 313..548 +
1680790064.2170382-CDS-C-tenellus_contig7841:1066..12051680790064.2170382-CDS-C-tenellus_contig7841:1066..1205Choristocarpus tenellus KU2346CDSC-tenellus_contig7841 1067..1205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7841.1.1prot_C-tenellus_contig7841.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7841 313..1205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7841.1.1

>prot_C-tenellus_contig7841.1.1 ID=prot_C-tenellus_contig7841.1.1|Name=mRNA_C-tenellus_contig7841.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=125bp
IFSSPPKQDAIKAYTECLDNIPSKTSPLAIKCYSNRSACYKQLSNFDGTV
QDTSAVLEAEPNNVKALMRRAQAFEAIERYRFALQDVRTVLHMPMDQVGA
ANFQLANGMQHRLNRVVQQLKNSS*
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mRNA from alignment at C-tenellus_contig7841:313..1205+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7841.1.1 ID=mRNA_C-tenellus_contig7841.1.1|Name=mRNA_C-tenellus_contig7841.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=893bp|location=Sequence derived from alignment at C-tenellus_contig7841:313..1205+ (Choristocarpus tenellus KU2346)
ATATTTTCCTCCCCACCCAAACAGGATGCAATCAAGGCCTACACAGAGTG CCTGGATAATATTCCAAGCAAGACAAGCCCTCTTGCCATCAAGTGCTACA GCAACCGATCTGCTTGCTACAAGCAACTGTCTAACTTTGATGGCACAGTG CAGGACACATCTGCTGTACTTGAGGCAGAGCCCAACAACGTTAAAGCACT CATGAGGAGAGCCCAAGCATTCGAGGCCATTGAGAGGTGTGTTACCACGT TTAACTAGTTGGGGAGAGAGAGTGTAGGGGGAGACAGGTACCGTGCTTGA CACCATCAAAATCCAAGTTGGATAAAAACAGACCTTACATGCTTTTATTC TCATATTTATCCTTCATACTTAATTCACAGCGATCTATTCTCCTCCCTCC CTATCCATCCAAGTTCCTTAACTCACAAATTTCAAGCTTTATTTTCTTTC GAAATCCAGGTGAGGCAATGCCTGACAGATTAGACAGATTGCCAAATGTC TGATAAACGTACCACACACTGATGATAAACAGTGATGAACTGTATTGTGA TTCTTCTTTTAAGTAGTTGGGGTACTAGAGGTATGCACAATACCTGTATT TTCAGGTGCATACCTCAAGGCTATTTCATTTTTTCATAAGGAAAAGGGAC TGCTGCTGCTACTGCTGTTGTCCAATTTTAGAGAATTGTATTGTATTTTA GTGTACACTCACTGAAGTAGTGCAAAATGCACATCCCATTGAAACAAAAT GCAGGTATCGGTTTGCACTTCAGGATGTTCGGACAGTTCTACACATGCCC ATGGATCAGGTTGGTGCTGCCAACTTCCAGCTTGCGAATGGCATGCAGCA CCGCCTGAACAGGGTGGTGCAACAGCTCAAGAACAGCTCTTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig7841:313..1205+

>mRNA_C-tenellus_contig7841.1.1 ID=mRNA_C-tenellus_contig7841.1.1|Name=mRNA_C-tenellus_contig7841.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=375bp|location=Sequence derived from alignment at C-tenellus_contig7841:313..1205+ (Choristocarpus tenellus KU2346)
ATATTTTCCTCCCCACCCAAACAGGATGCAATCAAGGCCTACACAGAGTG
CCTGGATAATATTCCAAGCAAGACAAGCCCTCTTGCCATCAAGTGCTACA
GCAACCGATCTGCTTGCTACAAGCAACTGTCTAACTTTGATGGCACAGTG
CAGGACACATCTGCTGTACTTGAGGCAGAGCCCAACAACGTTAAAGCACT
CATGAGGAGAGCCCAAGCATTCGAGGCCATTGAGAGGTATCGGTTTGCAC
TTCAGGATGTTCGGACAGTTCTACACATGCCCATGGATCAGGTTGGTGCT
GCCAACTTCCAGCTTGCGAATGGCATGCAGCACCGCCTGAACAGGGTGGT
GCAACAGCTCAAGAACAGCTCTTAG
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