mRNA_C-tenellus_contig7767.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7767.1.1
Unique NamemRNA_C-tenellus_contig7767.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7767.1.1 vs. uniprot
Match: D7G2T1_ECTSI (Putative transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T1_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 1.670e-74
Identity = 139/281 (49.47%), Postives = 194/281 (69.04%), Query Frame = 1
Query:   49 VAALVMGSAIRLSVVSHIPTALRVGVGCGISVLVSVLGGRSVGLLTGDGFAPPEFTWQLALGLLIVTGSCISWSSRS---KWPLIVGLPIAITLIVYAIFDRSKFEGYSSSS--PLSKWSEGTAGTISFREISGYG-SYWFYILRISFSIVINVTSILLILMDALCLQDMRKDSKGMTKIDTHKFIGTSKKFRIMGVLVPLMSMGGNALGVTTQAAFVETLVSIFGGARTGLASVVTGVLLLLNMLLWPLNVLLAPDHVTGALAIFVTIRFFASVKDVDIS 873
            VA  V+ SA   S VS IPTALR+G GCGISVLVSVLG R++G+L  + F+   FTWQ+ +G  I+T +C   +      KW  ++G+P+ IT+ +YA+ DRSKF+GYS +   PLS W  G  GTI+F E+      YWFYI R   S+ INV+SILLIL+DA+CL+D+R   K   ++D    IG +KKFR M   +P MS+ GN +GVTTQAAFV++++ +F G +TGL++VVTG LLL+  ++WPL  LLAP HV+GAL + +++RFF  +K +D++
Sbjct:   82 VAPSVLYSAPETSFVSLIPTALRLGAGCGISVLVSVLGMRNIGVLVNNSFSLQAFTWQIIVGFGIITAACGKAAPEKQLKKWMHVLGVPMVITVAIYAVLDRSKFQGYSLADHPPLSNWGMGAFGTINFSELRETPRKYWFYISRTFLSVNINVSSILLILIDAVCLEDVRTKVKSTREVDFSNAIGGTKKFRSMACAIPCMSLVGNFMGVTTQAAFVQSMILVFAGGKTGLSAVVTGALLLMTTVMWPLLPLLAPAHVSGALTVVISLRFFTVIKMIDVN 362          
BLAST of mRNA_C-tenellus_contig7767.1.1 vs. uniprot
Match: A0A6I6DSG9_9MICO (NCS2 family permease n=1 Tax=Microbacterium oryzae TaxID=743009 RepID=A0A6I6DSG9_9MICO)

HSP 1 Score: 75.5 bits (184), Expect = 1.350e-10
Identity = 78/307 (25.41%), Postives = 138/307 (44.95%), Query Frame = 1
Query:   79 RLSVVSHIPTALRVGVGCGISVLVSVLGGRSVGLLTGDGFAPPEF----TWQLALGLLIVTGSCISWSSRSKWPLIVGLPIAITLIVYA-----IFDRSKFEGYSSSSPLSKWSEGTAGTISFREISGYGSYWFYILRISFSIVINVTSI----LLILMDALCLQDMRKDSKGMTKIDTHKFI----GTSKKFRIMGVLVPLMSMGGNALGVTTQAAFVETLVSIFGGARTGLASVVTGVLLLLNMLLWPLNVLLAPDHVTGALAIFVTIRFFASVKDVDISYLPHGLAVVMPLLIIPFTFEFVDGL 948
            R +V   +PT L+  +G GI + ++++G  + G +TGDG          TW + + ++ +  + +  +   K  +++ + +A  L +       I DRS+  G  +S+P         G I+  + S  G          F ++ +V +I    L++L+  L L D       M  I     +    G   + + + ++  L ++ G    V++  AFVE+   +  GARTGLASVVTG+  LL+ L  PL V L P        + V       V  +D   +   L   + ++I+PFT+   DG+
Sbjct:  141 REAVFRAVPTPLKTAIGAGIGLFITLIGLANAGFVTGDGATILALGNLGTWPILVFVVGLVLAIVLHARHVKGAILISILVATALAIILENTLHIGDRSENPGGFNSAPR------FTGVIAVPDFSLIGQ---------FDLLGSVQNIGVVTLVLLVFTLLLADFFDTMGTMVAIGGEAGLLDKQGNPPRTKQILIVDSLGAVAGGVGSVSSNTAFVESTAGVGDGARTGLASVVTGIAFLLSTLFAPL-VALVPYEAAAPALVLVGFLMLTQVAGIDWKNIEVALPAFLTIVIMPFTYSIADGI 431          
BLAST of mRNA_C-tenellus_contig7767.1.1 vs. uniprot
Match: A0A2W5YH25_9MICO (NCS2 family permease n=1 Tax=Xylanimonas oleitrophica TaxID=2607479 RepID=A0A2W5YH25_9MICO)

HSP 1 Score: 73.6 bits (179), Expect = 5.620e-10
Identity = 77/304 (25.33%), Postives = 134/304 (44.08%), Query Frame = 1
Query:   79 RLSVVSHIPTALRVGVGCGISVLVSVLGGRSVGLLTGDGFAPPEF----TWQLALGLLIVTGSCISWSSRSKWPLIVGLPIAITLIVYAIFDRSKFEGYSSSSPLSKWSEGTAGTISFREISG------YGSYWFYILRISFSIVINVTSILLILMDALCLQDMRKDSKGMTKIDTHKFI----GTSKKFRIMGVLVPLMSMGGNALGVTTQAAFVETLVSIFGGARTGLASVVTGVLLLLNMLLWPLNVLLAPDHVTGALAIFVTIRFFASVKDVDISYLPHGLAVVMPLLIIPFTFEFVDGL 948
            R +V   +P  L+  +G GI + ++++G  + G +TGDG          TW + + ++ +  + + W  + K  +++ + +A  L V  I + +   G  S        E  AG  S    SG      +G    + L  SF  +  VT ILL+   +L L D       M  +     +    G   K + + V+  + ++ G    V++  ++VE+   +  GARTGLASVVTG L LL   L P+ V L P        +FV       +  +D   +   +   + ++ +PFT+   DG+
Sbjct:  145 REAVFRAVPVELKTAIGVGIGLFITLIGLANAGFVTGDGATVLALGNLGTWPILVFVVGLVLTIVLWVRKVKGAMLIAILVATVLAV--ILENTLHIGARSE-------ENPAGFNSAPTFSGVVEVPDFGILGHFSLLGSFQSIGVVTVILLVF--SLLLADFFDTMGTMVAVGGEAKLLDEQGNPPKTKQILVVDSVAAIAGGMGSVSSNTSYVESTAGVGEGARTGLASVVTGGLFLLATFLSPI-VALVPYEAAAPALVFVGFLMLTQIAGIDWKNVEIAIPAFLTIITMPFTYSIADGI 436          
BLAST of mRNA_C-tenellus_contig7767.1.1 vs. uniprot
Match: A0A1H0D445_9BACI (Putative MFS transporter, AGZA family, xanthine/uracil permease n=2 Tax=Bacillaceae TaxID=186817 RepID=A0A1H0D445_9BACI)

HSP 1 Score: 72.8 bits (177), Expect = 8.010e-10
Identity = 81/324 (25.00%), Postives = 150/324 (46.30%), Query Frame = 1
Query:   22 LAAQFVSNFVAALVMGSAIRLSVVSHIPTALRVGVGCGISVLVSVLGGRSVGLLTG---------DGFAPPEFTWQLALGLLIVTGSCISWSSRSKWPLIVGLPIAITLIVYAIFDRSKFEGYSSSSPLSKWSEGTAGTISFREISGYGSYWFYILRISFSIVINVTSILLILMDALCLQDMRKDSKGMTKIDTHKFIGTSKKFRIMGVLVPLMSMGGNALGVTTQAAFVETLVSIFGGARTGLASVVTGVLLLLNMLLWPLNVLLAPDHVTGALAIFVTIRFFASVKDVDISYLPHGLAVVMPLLIIPFTFEFVDGLCIALLM 966
            LA  FV+  +  ++  + +   + S IP +L+  +  GI +L+ ++G  + G++TG         D  +P   T    +GL+I     I +       L+  L I IT ++   F  + FEG S + P  +   G  G +S+ +    G+  F++  ISF++VI   +I LI             SK + + +       S K  +    + ++S G    G +   A VE+   I  G RTGL S+VTG+L L+++L  P+ + + P      + I + +    ++ ++ I  L   L  ++ +++IP T+   DG+ I  ++
Sbjct:  100 LAMVFVAGLIFIVIAFTPLAKVITSSIPNSLKEAITIGIGILLILIGFDNAGIITGSEHTLLAIGDLSSPQAVT--TFIGLIITV---ILFVKNIPGNLL--LSILITSLLSIWFGGATFEGISLTIPSLQEYIGVFGQLSWAQA---GNLVFWLTSISFAMVIVFENIGLI----------HGHSKMLNRYE-------SDKTSLQATAISVLSSG--IFGTSPTVASVESAAGITAGGRTGLTSIVTGLLFLVSILFIPV-IKMVPTSAVSPILILIGVLMLQNIVNISIDDLTESLPALLIIVLIPLTYSIADGMAIGFVL 393          
BLAST of mRNA_C-tenellus_contig7767.1.1 vs. uniprot
Match: UPI00135822EF (NCS2 family permease n=2 Tax=Promicromonosporaceae TaxID=85017 RepID=UPI00135822EF)

HSP 1 Score: 72.4 bits (176), Expect = 1.310e-9
Identity = 75/313 (23.96%), Postives = 140/313 (44.73%), Query Frame = 1
Query:   37 VSNFVAALVMGSAIRLSVVSHIPTALRVGVGCGISVLVSVLGGRSVGLLTGDGFAPPEF----TWQLALGLLIVTGSCISWSSRSKWPLIVGLPIAITLIVYAIFDRSKFEGYSSSSPLSKWSEGT-AGTISFREISGYGSYWFYILRISFSIVINVTSILLILMDALCLQDMRKDSKGMTKIDTHKFI----GTSKKFRIMGVLVPLMSMGGNALGVTTQAAFVETLVSIFGGARTGLASVVTGVLLLLNMLLWPLNVLLAPDHVTGALAIFVTIRFFASVKDVDISYLPHGLAVVMPLLIIPFTFEFVDGL 948
            +   +  L++ +  R +V   +P  L+  +G GI + ++++G  + G ++G+G          +W + + ++ +  + + W  + K  L++ + +A T++   + +       S  +P    S  T  G +   ++  +G    + L  SF  +  VT ILL+   +L L D       M  +     +    G   K + + ++  L +  G    V++  A+VE+   +  GARTGLASVVTGV  LL   L PL V L P        +FV       V  +D   L   +   + + ++PFT+   DG+
Sbjct:  132 IEGLIILLLVLTGFREAVFRAVPVELKTAIGVGIGLFITLIGLTNAGFVSGEGSTILSLGNLGSWPIVVFVVGLVLAIVLWVRKVKGALLIAI-LAATVLAVILENTLHIGARSEDNPTGFNSAPTFTGVV---DVPDFGLLGHFSLLGSFENIGVVTVILLVF--SLLLADFFDTMGTMVAVGAEARLLDAEGNPPKSKQILIIDSLAAAAGGMGSVSSNTAYVESTSGVGEGARTGLASVVTGVAFLLATFLSPL-VALVPYEAAAPALVFVGFLMMTQVAGIDWKKLDIAIPAFLTIALMPFTYSISDGI 437          
BLAST of mRNA_C-tenellus_contig7767.1.1 vs. uniprot
Match: A0A4S3PJW7_9BACI (NCS2 family permease n=8 Tax=Bacillaceae TaxID=186817 RepID=A0A4S3PJW7_9BACI)

HSP 1 Score: 72.0 bits (175), Expect = 1.410e-9
Identity = 81/324 (25.00%), Postives = 146/324 (45.06%), Query Frame = 1
Query:   22 LAAQFVSNFVAALVMGSAIRLSVVSHIPTALRVGVGCGISVLVSVLGGRSVGLLT---------GDGFAPPEFTWQLALGLLIVTGSCISWSSRSKWPLIVGLPIAITLIVYAIFDRSKFEGYSSSSPLSKWSEGTAGTISFREISGYGSYWFYILRISFSIVINVTSILLILMDALCLQDMRKDSKGMTKIDTHKFIGTSKKFRIMGVLVPLMSMGGNALGVTTQAAFVETLVSIFGGARTGLASVVTGVLLLLNMLLWPLNVLLAPDHVTGALAIFVTIRFFASVKDVDISYLPHGLAVVMPLLIIPFTFEFVDGLCIALLM 966
            LA  FVS  +  ++  + +   + S IP +L+  +  GI VL+ ++G  + G++T         GD  +P        +GL+I     I      + P  + L I IT ++  +F  +K+E  S S+P      G  G +S+ E    G+  F++  IS ++V+   +I LI             S  + + +       S K  +    V ++S G    G +   A VET   I  G RTGL S+VTGV+ LL+ML  P+ + + P      + I + +    ++ ++ +         ++ +++IP T+   DG+ I  ++
Sbjct:  100 LAMVFVSGLIFVVIAFTPLAKVITSSIPNSLKEAISIGIGVLLILIGFDNAGIITSSEHTLLAIGDLSSPSVIV--TFIGLIITVLLFIK-----QVPGNLLLSIFITSVLSILFGGAKYENISFSTPDFHEYFGVFGQLSWAEA---GNLVFWLTSISLAMVLVFENIGLI----------HGHSNMLNRPE-------SSKKSLQATAVSVLSSG--VFGTSPTVASVETAAGITAGGRTGLTSIVTGVMFLLSMLFIPV-IKMVPASAVSPILILIGVLMLQNIVNISMDDFTESFPALLIIVLIPLTYSIADGMAIGFIL 393          
BLAST of mRNA_C-tenellus_contig7767.1.1 vs. uniprot
Match: UPI001C8E850B (NCS2 family permease n=1 Tax=Mesobacillus maritimus TaxID=1643336 RepID=UPI001C8E850B)

HSP 1 Score: 71.2 bits (173), Expect = 2.490e-9
Identity = 79/323 (24.46%), Postives = 149/323 (46.13%), Query Frame = 1
Query:   22 LAAQFVSNFVAALVMGSAIRLSVVSHIPTALRVGVGCGISVLVSVLGGRSVGLLTGDGFAPPEFTWQLALGLLIVTGSCISWSSR--------SKWPLIVGLPIAITLIVYAIFDRSKFEGYSSSSPLSKWSEGTAGTISFREISGYGSYWFYILRISFSIVINVTSILLILMDALCLQDMRKDSKGMTKIDTHKFIGTSKKFRIMGVLVPLMSMGGNALGVTTQAAFVETLVSIFGGARTGLASVVTGVLLLLNMLLWPLNVLLAPDHVTGALAIFVTIRFFASVKDVDISYLPHGLAVVMPLLIIPFTFEFVDGLCIALLM 966
            LA  F +  +  ++  + +   + S IP +L+  +  GI +L+ ++G  + G++T       E T  LA+G L  + + I++              P  + L I IT ++  IF  S+FEG S S+P           +S+ +    G++ F++  IS ++V+   +I LI             +K + + +       S K  +    V ++S G    G +   A VE+   I  G RTGL S+VTG+L L+++L  P+  ++ P  V+  L I + +    +V  + +  L      ++ +++IP T+   DG+ I  ++
Sbjct:  100 LAMVFTAGIIFIIIAFTPLARVITSSIPDSLKEAISVGIGILLILIGFDNAGIITSS-----EHT-LLAIGDLSSSSAIITFIGLLITFLLFIRNVPGNLLLSIIITSVLAIIFGGSQFEGISFSAPSFGEYSNVFAQLSWAQA---GNFIFWLTSISLAMVLVFENIGLI----------HNHTKMLDRTE-------SSKKSLQATAVSVLSSG--VFGTSPTVASVESAAGITAGGRTGLTSIVTGLLFLISLLFIPVIKIVPPSAVSPVL-ILIGVLMLQNVVHIKMDDLTESFPALLIIVLIPLTYSIADGMAIGFIL 393          
BLAST of mRNA_C-tenellus_contig7767.1.1 vs. uniprot
Match: A0A3N0DNW4_9ACTN (NCS2 family permease n=2 Tax=Marmoricola solisilvae TaxID=1542737 RepID=A0A3N0DNW4_9ACTN)

HSP 1 Score: 70.5 bits (171), Expect = 5.190e-9
Identity = 81/310 (26.13%), Postives = 134/310 (43.23%), Query Frame = 1
Query:   79 RLSVVSHIPTALRVGVGCGISVLVSVLGGRSVGLLTGDGFAPPEF--TWQLA--------LGLLIVTGSCISWSSRSKWPLIVGLPIAITLIVYAIFDRSKFEGYSSSSPLS------KWSEGTAGTISFREISGYGSYWFYILRISFSIVINVTSILLILMDALCLQDMRKDSKGMTKIDTHKFI----GTSKKFRIMGVLVPLMSMGGNALGVTTQAAFVETLVSIFGGARTGLASVVTGVLLLLNMLLWPLNVLLAPDHVTGALAIFVTIRFFASVKDVDISYLPHGLAVVMPLLIIPFTFEFVDGL 948
            R +V   +P  L++ +  GI + ++ +G    G        P +   T +LA        +GLL+V      W  + K  +++ + IA T++   +     F G S  +PL       KW +    T  F  I  +       L  S+     VT ILLI    L L D       MT I     +    GT    + + ++  L ++ G A GV++  +++E+   +  GARTGLASVVTGVL L  +   PL  ++  +    AL + V       VK +D   L   +   + ++++PFT+    G+
Sbjct:  134 REAVFHAVPAPLKIAISVGIGLFITFIGFFDAGFTRPGSGTPVQLGPTGELAGWPVLVFVIGLLLVIAL---WVRKVKGAILISI-IATTILAIIVESIGDFGGKSDKNPLGWSLVTPKWPDKVFDTPHFHTIGHFN------LLDSWGDAGTVTVILLIF--TLMLADFFDTMGTMTAIGAEAGLLDEDGTPPNTQKILIVDSLAAVAGGAAGVSSNTSYIESASGVGEGARTGLASVVTGVLFLAAIFFAPLVQIIPSEAAVPAL-VLVGFLMMQQVKGIDWDDLEIAIPAFLTIVLMPFTYSITVGI 430          
BLAST of mRNA_C-tenellus_contig7767.1.1 vs. uniprot
Match: A0A2N5K2H6_9CHLR (NCS2 family permease n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2N5K2H6_9CHLR)

HSP 1 Score: 70.5 bits (171), Expect = 6.100e-9
Identity = 44/119 (36.97%), Postives = 69/119 (57.98%), Query Frame = 1
Query:  646 GNALGVTTQAAFVETLVSIFGGARTGLASVVTGVLLLLNMLLWPLNVLLAPDHVTGALAIFVTIRFFASVKDVDISYLPHGLAVVMPLLIIPFTFEFVDGLCIALLMAFICEQSLRILS 1002
            G   GV++   ++E+   +  GARTGLASVVTG+L LL + L P   L+ P+    AL I V    FA+V+++D+S L  G   ++ L+++P TF   +G+       F+C   LR++S
Sbjct:  397 GGLFGVSSVTTYIESAAGVSEGARTGLASVVTGLLFLLALALAPFAGLVPPEATAPAL-IIVGFLMFAAVREIDVSNLLDGFPALITLIMMPLTFSITNGIG----AGFVCYAFLRLVS 510          
BLAST of mRNA_C-tenellus_contig7767.1.1 vs. uniprot
Match: A0A3D0RZY3_9ACTN (Permease n=1 Tax=Nocardioides sp. TaxID=35761 RepID=A0A3D0RZY3_9ACTN)

HSP 1 Score: 69.3 bits (168), Expect = 1.220e-8
Identity = 79/309 (25.57%), Postives = 138/309 (44.66%), Query Frame = 1
Query:   79 RLSVVSHIPTALRVGVGCGISVLVSVLGGRSVGLLT-----GDGFAPPEFT-------WQL---ALGLLIVTGSCISWSSRSKWPLIVGLPIAITLIVYAIFDRSKFEGYSSSSPLSKWSEGTAGTISFREISGYGSYWFYILRISFSIVINVTSILLILMDALCLQDMRKDSKGMTKIDTHKFI----GTSKKFRIMGVLVPLMSMGGNALGVTTQAAFVETLVSIFGGARTGLASVVTGVLLLLNMLLWPLNVLLAPDHVTGALAIFVTIRFFASVKDVDISYLPHGLAVVMPLLIIPFTFEFVDGL 948
            R +V   +PTAL+  +  GI + ++++G    G +       +   P +         W +   A G+L+V      W  + K  +++ + +A T++   +      EG+S + P   W +    T SF  +  +       L  SF  +  V+++LLI    L L D       MT I     +    G     + + V+  L +  G   GV++  A++E+   +  GARTGLASVVTGVL LL +++ PL V L P     A  + V       V+++D   L   +   + ++++PFT+    G+
Sbjct:  143 RAAVFHAVPTALKTAISVGIGLFIALIGFVDAGFVARIPDAANTTVPVQLGSTGVLTGWPVVVFAFGMLLVIAL---WVRKVKGAILISI-VATTILALIVDALGASEGWSLNEPT--WPDEVFVTPSFDTVGHFS------LLGSFEQIGVVSTLLLIF--TLMLADFFDTMGTMTAIGAEAGLLDEDGIPPNTQRILVVDSLSAAAGGVGGVSSNTAYIESAAGVGEGARTGLASVVTGVLFLLTIMISPL-VKLIPSEAAVAALVLVGFLMMQQVREIDWLDLEIAIPAFLTIVLMPFTYSISVGI 436          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7767.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2T1_ECTSI1.670e-7449.47Putative transporter n=1 Tax=Ectocarpus siliculosu... [more]
A0A6I6DSG9_9MICO1.350e-1025.41NCS2 family permease n=1 Tax=Microbacterium oryzae... [more]
A0A2W5YH25_9MICO5.620e-1025.33NCS2 family permease n=1 Tax=Xylanimonas oleitroph... [more]
A0A1H0D445_9BACI8.010e-1025.00Putative MFS transporter, AGZA family, xanthine/ur... [more]
UPI00135822EF1.310e-923.96NCS2 family permease n=2 Tax=Promicromonosporaceae... [more]
A0A4S3PJW7_9BACI1.410e-925.00NCS2 family permease n=8 Tax=Bacillaceae TaxID=186... [more]
UPI001C8E850B2.490e-924.46NCS2 family permease n=1 Tax=Mesobacillus maritimu... [more]
A0A3N0DNW4_9ACTN5.190e-926.13NCS2 family permease n=2 Tax=Marmoricola solisilva... [more]
A0A2N5K2H6_9CHLR6.100e-936.97NCS2 family permease n=1 Tax=Chloroflexi bacterium... [more]
A0A3D0RZY3_9ACTN1.220e-825.57Permease n=1 Tax=Nocardioides sp. TaxID=35761 RepI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7767contigC-tenellus_contig7767:1887..5969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1410609.JHVB01000001_gene1965
PFAMsXan_ur_permease
Model size2126
Max annot lvl203691|Spirochaetes
KEGG koko:K06901
KEGG TC2.A.1.40
Hectar predicted targeting categoryother localisation
Exons5
Evalue7.23e-11
EggNOG OGsCOG2252@1|root,COG2252@2|Bacteria,2J59V@203691|Spirochaetes
DescriptionPFAM Xanthine uracil vitamin C permease
Cds size1320
COG categoryS
BRITEko00000,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7767.1.1prot_C-tenellus_contig7767.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7767 1950..5226 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790056.9542532-UTR-C-tenellus_contig7767:1886..19491680790056.9542532-UTR-C-tenellus_contig7767:1886..1949Choristocarpus tenellus KU2346UTRC-tenellus_contig7767 1887..1949 +
1680790057.0228465-UTR-C-tenellus_contig7767:5226..59691680790057.0228465-UTR-C-tenellus_contig7767:5226..5969Choristocarpus tenellus KU2346UTRC-tenellus_contig7767 5227..5969 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790056.9683602-CDS-C-tenellus_contig7767:1949..21111680790056.9683602-CDS-C-tenellus_contig7767:1949..2111Choristocarpus tenellus KU2346CDSC-tenellus_contig7767 1950..2111 +
1680790056.9766977-CDS-C-tenellus_contig7767:2515..28241680790056.9766977-CDS-C-tenellus_contig7767:2515..2824Choristocarpus tenellus KU2346CDSC-tenellus_contig7767 2516..2824 +
1680790056.984664-CDS-C-tenellus_contig7767:3105..31741680790056.984664-CDS-C-tenellus_contig7767:3105..3174Choristocarpus tenellus KU2346CDSC-tenellus_contig7767 3106..3174 +
1680790056.9998746-CDS-C-tenellus_contig7767:3880..41161680790056.9998746-CDS-C-tenellus_contig7767:3880..4116Choristocarpus tenellus KU2346CDSC-tenellus_contig7767 3881..4116 +
1680790057.009993-CDS-C-tenellus_contig7767:4682..52261680790057.009993-CDS-C-tenellus_contig7767:4682..5226Choristocarpus tenellus KU2346CDSC-tenellus_contig7767 4683..5226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7767.1.1

>prot_C-tenellus_contig7767.1.1 ID=prot_C-tenellus_contig7767.1.1|Name=mRNA_C-tenellus_contig7767.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=440bp
MGSAIRLSVVSHIPTALRVGVGCGISVLVSVLGGRSVGLLTGDGFAPPEF
TWQLALGLLIVTGSCISWSSRSKWPLIVGLPIAITLIVYAIFDRSKFEGY
SSSSPLSKWSEGTAGTISFREISGYGSYWFYILRISFSIVINVTSILLIL
MDALCLQDMRKDSKGMTKIDTHKFIGTSKKFRIMGVLVPLMSMGGNALGV
TTQAAFVETLVSIFGGARTGLASVVTGVLLLLNMLLWPLNVLLAPDHVTG
ALAIFVTIRFFASVKDVDISYLPHGLAVVMPLLIIPFTFEFVDGLCIALL
MAFICEQSLRILSAEKQLASDCDNLFRCNRLSTKTKRDLSVSGASISYPD
HRLGFGTTPSHSQSNRNTSLLPITSRASHVINCTAGASSDLEQGLSNCNI
SRVSSAVVPNVNGIRTSLHPGFALVALVELLLRVVDEQT*
back to top

mRNA from alignment at C-tenellus_contig7767:1887..5969+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7767.1.1 ID=mRNA_C-tenellus_contig7767.1.1|Name=mRNA_C-tenellus_contig7767.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4083bp|location=Sequence derived from alignment at C-tenellus_contig7767:1887..5969+ (Choristocarpus tenellus KU2346)
AGTTTTTCGATTGGCGGTATCCTGGCGGCGCAGTTTGTCTCCAACTTTGT TGCAGCTTTGGTGATGGGATCTGCAATTCGTTTGTCAGTTGTGTCCCATA TACCAACTGCTCTGAGGGTAGGAGTGGGCTGTGGCATATCGGTTCTCGTA AGTGTCCTTGGGGGCCGTAGTGTTGGACTCCTGACAGGCGACGGGTTTGC ACCTCCAGAGTTCACGTGGCAACTTGTGAGTGTGATCCTAATCTTATTCC TACTAAGATATAGCAGGAAAAACATGGCATGTTTATCAACTTCCCATGCA CAATGTGGATTGATTGATTAGCCCTCCAATTGATATCATTATTCCATAGC TGTTCTTGCATGAATTTATTTTTCGATTATCCCATTGGGGAGGGCAATTA GAGTTCTGGATAAAAGAATGTTATCATGCATGTGTGTACCTCGTCTCATA TATGTCCTAACTTCTTACTTTGTCTGACTGTCATCTTATCGTACAGGATA TTTTATGCTCTTGCTGCAGCCCACCAACTGTTGCAATTGTACTCTCATCC GTTTGGAGTTGCACACATTATTGCCAAGACAGTATACAGTATAGACTATT TTAACGCAAACTCCCACCCCACCCTTCAGGCCTTGGGCCTCCTCATTGTT ACAGGTAGTTGCATATCTTGGTCTTCCAGAAGCAAGTGGCCTTTGATAGT TGGACTCCCAATCGCCATTACTTTGATTGTATATGCCATTTTCGACCGGT CAAAGTTCGAGGGATACTCTTCCTCCTCTCCACTCTCCAAGTGGAGCGAG GGAACAGCAGGCACGATCTCCTTCCGCGAGATATCAGGATATGGGTCCTA CTGGTTCTACATCTTGAGGATATCCTTCAGTATTGTGATCAACGTGACAA GCATTCTTCTCATTCTTATGGATGCCTTATGTCTACAGGTAAGAGTGGAA TGCACATTTGCATTCCGCAACATTCTTTACTTTGAAAGTTTCATACTATG GAGTACTATGATGTGCTATGTTACGTATCACATTTAAGCGAACTATGATC TCACTGACAACTGCCCTACAGACTTCGGGAATTGTTCCTGGTCCTACACC TGCACCCTGCTTGTACCTCTGCTTTTTCTTGCATCTATTCCTGTTTATTT TGTGGCTCCACGTTTACGTGTGTAGAAGTTGTTGGTCATGATTCTTGCAA CTCATCCTGCCAATATCAGGACATGCGGAAGGATTCGAAGGGCATGACCA AGATTGACACCCACAAATTCATTGGCACATCCAAAAAGGTGTTGTGGAAC TATCCCATGTTCTCCTGTGTCCCTTGTGTCACTCCCTTCTCAAAAGCGGG ATGATCACTACTGTGGATTGTATTAGTACATTGCATAGTGTAGAGCTCTG GAATAAGGATTTGCACATCTCCTGTGTAGGCAACAACTACAGGTAGCGTC GTAACTACCCAAAGATTGCTGGTAGAATCATACTATCGACATATTTTTCA CACTGTATGATATCTGCTCAATGTGCTAAGCGGGGTAGTGCATTTTCTGT TGATGAACTGCAAGAGAAGAGAGAAAATATCTTAGAGGGTACAAGTTTTC CCCTCTTTGTCCATTTGGGGCTTGGCTTCCTATGGGTATTAATGGCATTT TCCTACTCCAAAATGCTTCGGAGTAGGTAAAATGTATACGTTATGAATGG GTGTGTCTGGAACAAGGATATTGACACTTCCTAACAAACATGATAGCCAA AATTACATCAAAATCGCACATTGGATTTTGGTCCCCGAATGGACGCGGAT CTACCCTCTAAGATGCATTGGCTCAGTAATTGTTGTGAGTACAGCAACAG AAATTTCATCTTGCGTTTAAAAATCGTCTGCTCGTCACACACAATGTCTA ACACCTTTTTTTTACTTCACTTGAACACCCTTGTCATCTCTAATGTCTCA AATTCATTTTCACTCTCTTTTTTGTGATATGGACTACCTGCAAGTTCCGG ATCATGGGGGTCCTTGTTCCCTTGATGTCAATGGGGGGTAATGCTCTAGG AGTGACCACCCAAGCAGCCTTTGTCGAAACATTGGTGTCTATTTTTGGTG GGGCACGCACAGGACTGGCTTCGGTCGTCACAGGTGTCCTGTTGCTACTG AACATGTTATTATGGCCACTAAATGTGTTGCTTGCCCCAGACCACGTCAC AGGGGCTCTCGCTATCTTTGTCACCATCAGGTATGGTGAAAGTTCAGGAT GTCCATGTTGACGAAGTGTTGATGAAAGTATCCCTCATTCGCACTAGTTG TTCCAGAGGACTTCACCAATTTTTTTTTGTTCTTATTTTGTAAACAAGGT GGAGTTATAGACAGGATGGCGTTTGCTACAGCACTACATATAGAATCTAT TGTAGTGGCATTATGGTACTTGTACTGTCAACAATGAATTGCCCATCAAC TCTTACAAACCTCACATATTGCTAGGAACATTTTTCAATATAATGTACCT TTCTTCCAGATCAAAGTCCTATTACTTCGAGTGAATTTATTAGCGATAAT TATTTCTGAATATCGCAAGTAGTGGCACATCTAGGCGTTGGGAGCTTCAT GTACGGGTAAGATAAGGAGATCGACCGATTTTAATTGTAGGAATGGTTTT ACTTTGTCCTCAGAAATTTTATCTAAAACACAATCACTTCGGAGTACATA GTATACTAATAGATATTCTAGGAGTATTGTGGAGTGCATGATGAAACACC ACCAGGGCTTGACCTGATTGATCCCTCACATCCAACCCCTCCGCAGGTTT TTTGCCAGTGTGAAGGATGTGGATATTTCCTATCTCCCACACGGCCTGGC TGTGGTGATGCCGTTATTGATCATCCCCTTCACATTTGAGTTTGTGGATG GCCTCTGCATTGCATTGTTAATGGCATTTATATGTGAACAGAGTCTGCGG ATCCTGTCGGCAGAGAAGCAGTTGGCATCAGATTGTGATAACCTATTCCG TTGTAATAGGTTGTCAACAAAAACAAAACGTGATCTATCCGTCAGTGGTG CGTCTATATCGTACCCTGACCATAGGCTTGGGTTTGGTACAACGCCCTCT CACTCCCAGTCCAATAGGAACACCAGTCTCTTACCCATTACCAGCAGGGC GTCACATGTGATAAACTGCACTGCAGGGGCAAGTAGTGATCTTGAGCAGG GATTATCCAACTGTAACATTTCCCGAGTCTCATCTGCAGTAGTTCCCAAT GTGAATGGTATTCGCACAAGTCTCCACCCAGGCTTTGCCCTTGTGGCCCT TGTGGAGCTATTGCTTAGGGTAGTGGATGAACAAACATAAATTAACTCTA TGTAGTTTAACAAAACCAGGGTGGACAAAAGCACATAGAGTTCGGAGAAA ATATGGAGGAGGATTCCATGCCCTACGTTGAACCTTACTGTTCGTAGCCT GTCATGACCCCATTGGTAAAGTACATTTGTCGGAACATATTGTTTGATGT TCGATTACCATTTAGCCATGAGGTCACTGTATATGATACACTAATGATGA GGCAGTGGGAGTCTAATCTGAACATTCAGTGTTGGAGTTTGATTTTATGG TGGTAGAGGTAGGACAAATGCCTCACACCAAAGAAAGGTAGCTAGGTCAA GGCTCAGTTGAGTTTGTCGTCCCACGTGTGTGTGTATATATATATCCCTT GTGTGGCATTCTTGAGGACTTACGAGAAAATATTTTCATATCTGCCAAAA CTTCTATGGAGTTTGTGTGAATTTGGAGCGTTGCCTCTACTTTCTCTTCC TCAACGTGATCCGTGGTCTCACTTTCTTCTATTGCTTCTTATTAGTATGA TTAGTCGTAGCATTGGTTGGTGACAATACCATTAACTCCTTGTCATGGTA CTTTTTGTTAGTGGATCCTACTGTGGTAGTGATACATGGAACTATTGTTA TTGTTGCCTGTCATATTTAATGTTGTGAATTAGTATGGAGTAAGTAGGTG ATTCATCATTTACCTACCACATTAAAAATAATGAAGAGTACATGATATGT GGCACACATGATACACATATTACAAGAACAGGG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig7767:1887..5969+

>mRNA_C-tenellus_contig7767.1.1 ID=mRNA_C-tenellus_contig7767.1.1|Name=mRNA_C-tenellus_contig7767.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1320bp|location=Sequence derived from alignment at C-tenellus_contig7767:1887..5969+ (Choristocarpus tenellus KU2346)
ATGGGATCTGCAATTCGTTTGTCAGTTGTGTCCCATATACCAACTGCTCT
GAGGGTAGGAGTGGGCTGTGGCATATCGGTTCTCGTAAGTGTCCTTGGGG
GCCGTAGTGTTGGACTCCTGACAGGCGACGGGTTTGCACCTCCAGAGTTC
ACGTGGCAACTTGCCTTGGGCCTCCTCATTGTTACAGGTAGTTGCATATC
TTGGTCTTCCAGAAGCAAGTGGCCTTTGATAGTTGGACTCCCAATCGCCA
TTACTTTGATTGTATATGCCATTTTCGACCGGTCAAAGTTCGAGGGATAC
TCTTCCTCCTCTCCACTCTCCAAGTGGAGCGAGGGAACAGCAGGCACGAT
CTCCTTCCGCGAGATATCAGGATATGGGTCCTACTGGTTCTACATCTTGA
GGATATCCTTCAGTATTGTGATCAACGTGACAAGCATTCTTCTCATTCTT
ATGGATGCCTTATGTCTACAGGACATGCGGAAGGATTCGAAGGGCATGAC
CAAGATTGACACCCACAAATTCATTGGCACATCCAAAAAGTTCCGGATCA
TGGGGGTCCTTGTTCCCTTGATGTCAATGGGGGGTAATGCTCTAGGAGTG
ACCACCCAAGCAGCCTTTGTCGAAACATTGGTGTCTATTTTTGGTGGGGC
ACGCACAGGACTGGCTTCGGTCGTCACAGGTGTCCTGTTGCTACTGAACA
TGTTATTATGGCCACTAAATGTGTTGCTTGCCCCAGACCACGTCACAGGG
GCTCTCGCTATCTTTGTCACCATCAGGTTTTTTGCCAGTGTGAAGGATGT
GGATATTTCCTATCTCCCACACGGCCTGGCTGTGGTGATGCCGTTATTGA
TCATCCCCTTCACATTTGAGTTTGTGGATGGCCTCTGCATTGCATTGTTA
ATGGCATTTATATGTGAACAGAGTCTGCGGATCCTGTCGGCAGAGAAGCA
GTTGGCATCAGATTGTGATAACCTATTCCGTTGTAATAGGTTGTCAACAA
AAACAAAACGTGATCTATCCGTCAGTGGTGCGTCTATATCGTACCCTGAC
CATAGGCTTGGGTTTGGTACAACGCCCTCTCACTCCCAGTCCAATAGGAA
CACCAGTCTCTTACCCATTACCAGCAGGGCGTCACATGTGATAAACTGCA
CTGCAGGGGCAAGTAGTGATCTTGAGCAGGGATTATCCAACTGTAACATT
TCCCGAGTCTCATCTGCAGTAGTTCCCAATGTGAATGGTATTCGCACAAG
TCTCCACCCAGGCTTTGCCCTTGTGGCCCTTGTGGAGCTATTGCTTAGGG
TAGTGGATGAACAAACATAA
back to top