mRNA_C-tenellus_contig759.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig759.1.1
Unique NamemRNA_C-tenellus_contig759.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig759.1.1 vs. uniprot
Match: D7FJL1_ECTSI (RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJL1_ECTSI)

HSP 1 Score: 404 bits (1037), Expect = 1.150e-135
Identity = 201/223 (90.13%), Postives = 212/223 (95.07%), Query Frame = 1
Query:    1 QGYVVCPSEKRFLLLFTFFKKNKKNKIKKIMVFFSPCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTSFFQFCRQEKGVLLCTDVAARGLDIPSVDWIIQYDPPDQTAEYIHRVGRTARGQSSKGRALLFLLPEEIGFLRYLKAAKAKLNEYEFPVKKAANAQSQLGRLIEKNYYLNKSAREAYRSYLLAYSSHSLKNIYNVHELDLQAVARAFGFTVPPRV 669
            QGYVVCPS+KRFLLLFTF KKN+K   KKIMVFFS CNSVKFHSELLNYID+PVMDIHGRQKQQKRTTSFFQFC+Q+ GVLLCTDVAARGLDIP+VDWIIQ+DPPDQTAEYIHRVGRTARGQS KGRALLFLLPEE+GFLRYL+ AKAKLNEYEFPVKK AN QSQL RLIEKNYYLNKSAREAYRSYLLAYSSHSLK+IY+VHELDLQAVARAFGFTVPPRV
Sbjct:  372 QGYVVCPSDKRFLLLFTFLKKNRK---KKIMVFFSSCNSVKFHSELLNYIDMPVMDIHGRQKQQKRTTSFFQFCKQDTGVLLCTDVAARGLDIPAVDWIIQFDPPDQTAEYIHRVGRTARGQSGKGRALLFLLPEEVGFLRYLRTAKAKLNEYEFPVKKVANVQSQLSRLIEKNYYLNKSAREAYRSYLLAYSSHSLKDIYDVHELDLQAVARAFGFTVPPRV 591          
BLAST of mRNA_C-tenellus_contig759.1.1 vs. uniprot
Match: A0A835ZG10_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG10_9STRA)

HSP 1 Score: 384 bits (986), Expect = 2.390e-127
Identity = 187/223 (83.86%), Postives = 204/223 (91.48%), Query Frame = 1
Query:    1 QGYVVCPSEKRFLLLFTFFKKNKKNKIKKIMVFFSPCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTSFFQFCRQEKGVLLCTDVAARGLDIPSVDWIIQYDPPDQTAEYIHRVGRTARGQSSKGRALLFLLPEEIGFLRYLKAAKAKLNEYEFPVKKAANAQSQLGRLIEKNYYLNKSAREAYRSYLLAYSSHSLKNIYNVHELDLQAVARAFGFTVPPRV 669
            QGYVVCPSEKRFLLLFTF KKN+    KK+MVFFS CNSV +H+ELLNYIDIPVM+IHGRQKQQKRTT+FFQFCRQE G+LLCTDVAARGLDIP+VDWIIQYDPPDQTAEYIHRVGRTARG +  GRALLFLLP+E+GFLRYL+AAK  LNEYEFP  K AN QSQL RL+EKNYYLNKSAR+AYRSYLLAY+SHSLK +YNVHELDLQAVA+AFGFTVPPRV
Sbjct:  430 QGYVVCPSEKRFLLLFTFLKKNRN---KKVMVFFSSCNSVNYHAELLNYIDIPVMNIHGRQKQQKRTTTFFQFCRQETGILLCTDVAARGLDIPAVDWIIQYDPPDQTAEYIHRVGRTARGSTGAGRALLFLLPQEVGFLRYLRAAKVTLNEYEFPAHKVANVQSQLSRLVEKNYYLNKSARDAYRSYLLAYASHSLKTLYNVHELDLQAVAKAFGFTVPPRV 649          
BLAST of mRNA_C-tenellus_contig759.1.1 vs. uniprot
Match: A0A7S2RSI8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSI8_9STRA)

HSP 1 Score: 361 bits (926), Expect = 4.990e-124
Identity = 176/223 (78.92%), Postives = 199/223 (89.24%), Query Frame = 1
Query:    1 QGYVVCPSEKRFLLLFTFFKKNKKNKIKKIMVFFSPCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTSFFQFCRQEKGVLLCTDVAARGLDIPSVDWIIQYDPPDQTAEYIHRVGRTARGQSSKGRALLFLLPEEIGFLRYLKAAKAKLNEYEFPVKKAANAQSQLGRLIEKNYYLNKSAREAYRSYLLAYSSHSLKNIYNVHELDLQAVARAFGFTVPPRV 669
            QG+VVCPS++RFLLLFTF K+N+K   KKIMVFFS CNSVKFHSELLNYIDIPVMDIHG+QKQQKRTT+FFQFCRQ++G+LLCTDVAARGLDIPSVDWIIQYDPPD   EYIHRVGRTARG +  GRALLFLLPEE+GFL+YL++AK  LNEYEF   K AN QSQL RLIE NYYLNKS REA+RSYL++Y+SHSLK+I+NVHELDL+ V  AFGF+VPPRV
Sbjct:    7 QGFVVCPSQRRFLLLFTFLKRNRK---KKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGKQKQQKRTTTFFQFCRQKEGILLCTDVAARGLDIPSVDWIIQYDPPDDPREYIHRVGRTARGLTGAGRALLFLLPEEVGFLKYLRSAKVSLNEYEFQSNKIANVQSQLTRLIENNYYLNKSGREAFRSYLMSYASHSLKDIFNVHELDLEGVGVAFGFSVPPRV 226          
BLAST of mRNA_C-tenellus_contig759.1.1 vs. uniprot
Match: W7U0G2_9STRA (RNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0G2_9STRA)

HSP 1 Score: 372 bits (956), Expect = 2.270e-122
Identity = 181/223 (81.17%), Postives = 204/223 (91.48%), Query Frame = 1
Query:    1 QGYVVCPSEKRFLLLFTFFKKNKKNKIKKIMVFFSPCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTSFFQFCRQEKGVLLCTDVAARGLDIPSVDWIIQYDPPDQTAEYIHRVGRTARGQSSKGRALLFLLPEEIGFLRYLKAAKAKLNEYEFPVKKAANAQSQLGRLIEKNYYLNKSAREAYRSYLLAYSSHSLKNIYNVHELDLQAVARAFGFTVPPRV 669
            QGYVVCPS+KRFLLLFTF K+NK+   +KIMVFFS CNSVKFH+ELLNYID+PVMDIHGRQKQQ+RTT+FFQFCRQ+KG+LLCTDVAARGLDIP+VDWIIQYDPPD   EYIHRVGRTARG + KGRALLFL  EE+GFL+YL+AAK  LNEYEFP KK AN Q+QL +L+EKNYYLNKSAR+AYRSYLLAY+SHS K+I+NVHELDLQAVARAFGF+VPPRV
Sbjct:  470 QGYVVCPSDKRFLLLFTFLKRNKQ---RKIMVFFSSCNSVKFHAELLNYIDLPVMDIHGRQKQQRRTTTFFQFCRQDKGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGAAGKGRALLFLTAEEVGFLKYLRAAKVALNEYEFPEKKVANVQAQLTKLVEKNYYLNKSARDAYRSYLLAYASHSHKDIFNVHELDLQAVARAFGFSVPPRV 689          
BLAST of mRNA_C-tenellus_contig759.1.1 vs. uniprot
Match: B8BY61_THAPS (RNA helicase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BY61_THAPS)

HSP 1 Score: 358 bits (920), Expect = 1.250e-119
Identity = 179/223 (80.27%), Postives = 194/223 (87.00%), Query Frame = 1
Query:    1 QGYVVCPSEKRFLLLFTFFKKNKKNKIKKIMVFFSPCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTSFFQFCRQEKGVLLCTDVAARGLDIPSVDWIIQYDPPDQTAEYIHRVGRTARGQSSKGRALLFLLPEEIGFLRYLKAAKAKLNEYEFPVKKAANAQSQLGRLIEKNYYLNKSAREAYRSYLLAYSSHSLKNIYNVHELDLQAVARAFGFTVPPRV 669
            QGYV  PS++RFLLLFTF KKNK    KKIMVFFS CNSVKFHSELLNYIDIPVMDIHGRQKQQKRTT+FFQFC+Q  G LLCTDVAARGLDIP+VDWIIQ+DPPD   EYIHRVGRTARG+  KGRALLFL PEE GFLRYLKAAK  LNEYEFP+ K AN QSQL RLIEKNYYLN +AR+AYRSYLLAY+SHSL++I++VH LDL AV RAFGFT PPRV
Sbjct:  246 QGYVTVPSDQRFLLLFTFLKKNKN---KKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTTFFQFCKQTTGTLLCTDVAARGLDIPAVDWIIQFDPPDDPKEYIHRVGRTARGEKGKGRALLFLTPEETGFLRYLKAAKVTLNEYEFPMTKLANVQSQLQRLIEKNYYLNCAARDAYRSYLLAYTSHSLRDIFDVHSLDLAAVGRAFGFTAPPRV 465          
BLAST of mRNA_C-tenellus_contig759.1.1 vs. uniprot
Match: K0T9N9_THAOC (RNA helicase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T9N9_THAOC)

HSP 1 Score: 362 bits (928), Expect = 1.810e-119
Identity = 180/223 (80.72%), Postives = 194/223 (87.00%), Query Frame = 1
Query:    1 QGYVVCPSEKRFLLLFTFFKKNKKNKIKKIMVFFSPCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTSFFQFCRQEKGVLLCTDVAARGLDIPSVDWIIQYDPPDQTAEYIHRVGRTARGQSSKGRALLFLLPEEIGFLRYLKAAKAKLNEYEFPVKKAANAQSQLGRLIEKNYYLNKSAREAYRSYLLAYSSHSLKNIYNVHELDLQAVARAFGFTVPPRV 669
            QGYV  PS++RFLLLFTF KKNK    KKIMVFFS CNSVKFH+ELLNYIDIP MDIHGRQKQQKRTT+FFQFC+Q KG LLCTDVAARGLDIP+VDWIIQ+DPPD   EYIHRVGRTARG    GRALLFL PEE GFLRYLKAAK  LNEYEFP+KK AN QSQL RLIEKNYYLN +AR+AYRSYLLAY+SHSL++I+NVHELDL AV RAFGFT PPRV
Sbjct:  354 QGYVTVPSDQRFLLLFTFLKKNKN---KKIMVFFSSCNSVKFHAELLNYIDIPCMDIHGRQKQQKRTTTFFQFCKQSKGTLLCTDVAARGLDIPAVDWIIQFDPPDDPKEYIHRVGRTARGDEGTGRALLFLTPEETGFLRYLKAAKVTLNEYEFPMKKLANVQSQLQRLIEKNYYLNCAARDAYRSYLLAYASHSLRDIFNVHELDLSAVGRAFGFTAPPRV 573          
BLAST of mRNA_C-tenellus_contig759.1.1 vs. uniprot
Match: A0A7S2YMR7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YMR7_9STRA)

HSP 1 Score: 352 bits (903), Expect = 4.720e-119
Identity = 176/223 (78.92%), Postives = 189/223 (84.75%), Query Frame = 1
Query:    1 QGYVVCPSEKRFLLLFTFFKKNKKNKIKKIMVFFSPCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTSFFQFCRQEKGVLLCTDVAARGLDIPSVDWIIQYDPPDQTAEYIHRVGRTARGQSSKGRALLFLLPEEIGFLRYLKAAKAKLNEYEFPVKKAANAQSQLGRLIEKNYYLNKSAREAYRSYLLAYSSHSLKNIYNVHELDLQAVARAFGFTVPPRV 669
            QG+V CPS KRFLLLFTF KKNK    KKIMVFFS CNSVKFH+ELLNYIDIPVMDIHGRQKQ KRTT+FFQFC+ E G L CTDVAARGLDIP VDWIIQ+DPPD   EYIHRVGRTARG    GRALLFL PE+ GFL+YLKAAK  LNEYEFP  K AN QSQL +LIE NYYLN SAR+AYRSYLLAY+SHS ++I+NVHELDLQAV RAFGFTVPPRV
Sbjct:  110 QGFVTCPSNKRFLLLFTFLKKNKN---KKIMVFFSSCNSVKFHAELLNYIDIPVMDIHGRQKQVKRTTTFFQFCKNEVGTLCCTDVAARGLDIPKVDWIIQFDPPDDPREYIHRVGRTARGAKGSGRALLFLTPEKTGFLKYLKAAKVTLNEYEFPDNKVANVQSQLQKLIESNYYLNCSARDAYRSYLLAYASHSHRDIFNVHELDLQAVGRAFGFTVPPRV 329          
BLAST of mRNA_C-tenellus_contig759.1.1 vs. uniprot
Match: A0A7S1XXW2_9STRA (RNA helicase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXW2_9STRA)

HSP 1 Score: 357 bits (917), Expect = 9.510e-119
Identity = 171/223 (76.68%), Postives = 197/223 (88.34%), Query Frame = 1
Query:    1 QGYVVCPSEKRFLLLFTFFKKNKKNKIKKIMVFFSPCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTSFFQFCRQEKGVLLCTDVAARGLDIPSVDWIIQYDPPDQTAEYIHRVGRTARGQSSKGRALLFLLPEEIGFLRYLKAAKAKLNEYEFPVKKAANAQSQLGRLIEKNYYLNKSAREAYRSYLLAYSSHSLKNIYNVHELDLQAVARAFGFTVPPRV 669
            QGYVVCPS  RFLLLFTF KKN+K   +K+MVFFS CN+VK+H+ELLNYID+PVMDIHGRQKQQ+RT++FFQFC+ + G+LLCTDVAARGLDIP+VDWI+QYDPPDQ AEYIHRVGRTARG S  GRALLFL PEE+GFLRYL+ AK  LNEYEFP  K AN Q+QL RL+E+NYYLNKSAREAYRSYLLAY+SH+ K+I+NVH LDL A A++FGFTVPPRV
Sbjct:  281 QGYVVCPSANRFLLLFTFLKKNRK---RKVMVFFSSCNAVKYHAELLNYIDVPVMDIHGRQKQQRRTSTFFQFCKADTGILLCTDVAARGLDIPAVDWIVQYDPPDQPAEYIHRVGRTARGPSGDGRALLFLAPEEVGFLRYLRKAKVALNEYEFPTSKVANVQNQLERLVERNYYLNKSAREAYRSYLLAYASHADKDIFNVHNLDLVATAKSFGFTVPPRV 500          
BLAST of mRNA_C-tenellus_contig759.1.1 vs. uniprot
Match: A0A7S2PMU9_9STRA (RNA helicase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PMU9_9STRA)

HSP 1 Score: 359 bits (921), Expect = 1.010e-118
Identity = 179/223 (80.27%), Postives = 193/223 (86.55%), Query Frame = 1
Query:    1 QGYVVCPSEKRFLLLFTFFKKNKKNKIKKIMVFFSPCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTSFFQFCRQEKGVLLCTDVAARGLDIPSVDWIIQYDPPDQTAEYIHRVGRTARGQSSKGRALLFLLPEEIGFLRYLKAAKAKLNEYEFPVKKAANAQSQLGRLIEKNYYLNKSAREAYRSYLLAYSSHSLKNIYNVHELDLQAVARAFGFTVPPRV 669
            QGYV  PS++RFLLLFTF KKNK    KKIMVFFS CNSVKFHSELLNYIDIPVMDIHGRQKQQKRTT+FFQFC+Q  G LLCTDVAARGLDIP+VDWIIQ+DPPD   EYIHRVGRTARG    GRALLFL PEE GFLRYLK AK  LNEYEFP+KK +N QSQL RLIEKNYYLN +AR+AYRSYLLAY+SHSL++I+NVHELDL AV RAFGFT PPRV
Sbjct:  328 QGYVTVPSDQRFLLLFTFLKKNKN---KKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTTFFQFCKQTTGTLLCTDVAARGLDIPAVDWIIQFDPPDDPKEYIHRVGRTARGDKGTGRALLFLTPEETGFLRYLKVAKVTLNEYEFPMKKLSNVQSQLQRLIEKNYYLNCAARDAYRSYLLAYASHSLRDIFNVHELDLAAVGRAFGFTAPPRV 547          
BLAST of mRNA_C-tenellus_contig759.1.1 vs. uniprot
Match: A0A7S2KTK2_9STRA (RNA helicase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KTK2_9STRA)

HSP 1 Score: 354 bits (909), Expect = 3.360e-117
Identity = 175/223 (78.48%), Postives = 192/223 (86.10%), Query Frame = 1
Query:    1 QGYVVCPSEKRFLLLFTFFKKNKKNKIKKIMVFFSPCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTSFFQFCRQEKGVLLCTDVAARGLDIPSVDWIIQYDPPDQTAEYIHRVGRTARGQSSKGRALLFLLPEEIGFLRYLKAAKAKLNEYEFPVKKAANAQSQLGRLIEKNYYLNKSAREAYRSYLLAYSSHSLKNIYNVHELDLQAVARAFGFTVPPRV 669
            QG+V CPS+KRFLLLFTF KKN+K   KKIMVFFS CNSVKFHSELLNYIDIPVMDIHGRQKQQKRTT+FFQF + + G LLCTDVAARGLDIP VDWIIQ+DPPD   EYIHRVGRTARG +  GRALLFL PEE GFL+YL+AAK  LNEYEFPV K AN QSQL  LIEKNYYLN+SAR+AYRSYLLAY+SHS K+I+NVH++DLQ  A AFGFT PPRV
Sbjct:  308 QGFVTCPSDKRFLLLFTFLKKNRK---KKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTTFFQFMKDKTGTLLCTDVAARGLDIPEVDWIIQFDPPDDPKEYIHRVGRTARGATGSGRALLFLTPEETGFLKYLQAAKVTLNEYEFPVSKVANVQSQLQNLIEKNYYLNRSARDAYRSYLLAYASHSHKDIFNVHQMDLQGAATAFGFTTPPRV 527          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig759.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJL1_ECTSI1.150e-13590.13RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A835ZG10_9STRA2.390e-12783.86RNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S2RSI8_9STRA4.990e-12478.92Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7U0G2_9STRA2.270e-12281.17RNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
B8BY61_THAPS1.250e-11980.27RNA helicase n=1 Tax=Thalassiosira pseudonana TaxI... [more]
K0T9N9_THAOC1.810e-11980.72RNA helicase n=1 Tax=Thalassiosira oceanica TaxID=... [more]
A0A7S2YMR7_9STRA4.720e-11978.92Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S1XXW2_9STRA9.510e-11976.68RNA helicase n=1 Tax=Phaeomonas parva TaxID=124430... [more]
A0A7S2PMU9_9STRA1.010e-11880.27RNA helicase n=1 Tax=Skeletonema marinoi TaxID=267... [more]
A0A7S2KTK2_9STRA3.360e-11778.48RNA helicase n=1 Tax=Leptocylindrus danicus TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig759contigC-tenellus_contig759:258..3935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJL1
Preferred nameDDX18
PFAMsDEAD,DUF4217,Helicase_C
Model size669
Max annot lvl2759|Eukaryota
KEGG koko:K03254,ko:K13179
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0000288,GO:0000291,GO:0000462,GO:0000463,GO:0000470,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008283,GO:0009056,GO:0009057,GO:0009889,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010501,GO:0010556,GO:0010605,GO:0010608,GO:0010629,GO:0012505,GO:0016032,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0016442,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019058,GO:0019068,GO:0019072,GO:0019074,GO:0019222,GO:0019439,GO:0019904,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0030684,GO:0030686,GO:0030687,GO:0031323,GO:0031326,GO:0031332,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032991,GO:0033962,GO:0034248,GO:0034470,GO:0034622,GO:0034641,GO:0034655,GO:0034660,GO:0035770,GO:0036464,GO:0042254,GO:0042273,GO:0042274,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1990417,GO:1990904,GO:2000112
Exons6
Evalue1.88e-136
EggNOG OGsCOG0513@1|root,KOG0342@2759|Eukaryota
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-04_006510.1
EC3.6.4.13
Descriptionhelicase activity
Cds size669
COG categoryJKL
BRITEko00000,ko00001,ko01000,ko03009,ko03012,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig759.1.1prot_C-tenellus_contig759.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig759 258..3935 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790045.658744-CDS-C-tenellus_contig759:257..3501680790045.658744-CDS-C-tenellus_contig759:257..350Choristocarpus tenellus KU2346CDSC-tenellus_contig759 258..350 +
1680790045.678406-CDS-C-tenellus_contig759:663..7981680790045.678406-CDS-C-tenellus_contig759:663..798Choristocarpus tenellus KU2346CDSC-tenellus_contig759 664..798 +
1680790045.6900518-CDS-C-tenellus_contig759:1963..21151680790045.6900518-CDS-C-tenellus_contig759:1963..2115Choristocarpus tenellus KU2346CDSC-tenellus_contig759 1964..2115 +
1680790045.7082233-CDS-C-tenellus_contig759:2775..28361680790045.7082233-CDS-C-tenellus_contig759:2775..2836Choristocarpus tenellus KU2346CDSC-tenellus_contig759 2776..2836 +
1680790045.7213166-CDS-C-tenellus_contig759:3371..34791680790045.7213166-CDS-C-tenellus_contig759:3371..3479Choristocarpus tenellus KU2346CDSC-tenellus_contig759 3372..3479 +
1680790045.7306137-CDS-C-tenellus_contig759:3815..39351680790045.7306137-CDS-C-tenellus_contig759:3815..3935Choristocarpus tenellus KU2346CDSC-tenellus_contig759 3816..3935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig759.1.1

>prot_C-tenellus_contig759.1.1 ID=prot_C-tenellus_contig759.1.1|Name=mRNA_C-tenellus_contig759.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=223bp
QGYVVCPSEKRFLLLFTFFKKNKKNKIKKIMVFFSPCNSVKFHSELLNYI
DIPVMDIHGRQKQQKRTTSFFQFCRQEKGVLLCTDVAARGLDIPSVDWII
QYDPPDQTAEYIHRVGRTARGQSSKGRALLFLLPEEIGFLRYLKAAKAKL
NEYEFPVKKAANAQSQLGRLIEKNYYLNKSAREAYRSYLLAYSSHSLKNI
YNVHELDLQAVARAFGFTVPPRV
back to top

mRNA from alignment at C-tenellus_contig759:258..3935+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig759.1.1 ID=mRNA_C-tenellus_contig759.1.1|Name=mRNA_C-tenellus_contig759.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3678bp|location=Sequence derived from alignment at C-tenellus_contig759:258..3935+ (Choristocarpus tenellus KU2346)
CAGGGGTATGTGGTGTGCCCCAGCGAAAAGAGATTCCTGTTACTTTTCAC CTTCTTTAAGAAGAACAAGAAGAACAAGATCAAGAAGATCATGGTGATAA AAAATAAATTAAATTAAGAAGAAAAAGAGAAAGTGCAGATTTTTTTATTC TATTTGTGGTACGCCTTCCTGGAACAAACAACACCTACCACAGTCCTGTC CAGGCACAGGAGAAAATGGAAAATGTAGTATTTGTATAGAGCGTTTGAAA TAGGTAAATGTAAATGTCAAGTGTTTATCTTTAGAAAGAAGAGTAGTATG TATATATTGACAATTCTATTTTTGCTGTTGTATAGAGTATTTTGTCTCTG TGCATGCCAACATATATATGTGTGTATATGTGTAGTGTGTATTTGTGTGT TTTCAGGTGTTTTTCTCCCCCTGCAATTCTGTGAAATTCCACTCAGAGCT CCTCAATTATATTGATATACCAGTCATGGATATCCATGGACGTCAGAAGC AGCAGAAGCGAACAACTTCATTCTTCCAATTTTGTCGTCAGGTACGTATG TATTTATATTGTACTGTTGTTGTATATTATTTCTTGGGATGCTCCAGGGC GCTCTGGACCTTTGTGCATTGTTTAGTTTTGTTTATGATGTCTTTCTCTC TTGTTTTCTTCTTTGCTTGATCAATGGATACACTTACTAATTTGATGATT CTATCGTGGTGGTCGTAACAGACAAGAGAAAATGAGAGAAGAAACCAAAT TGTAACTGTTGTTAAAAGGCGTTAGCGTTGAATATCTCGAGCTCTGTAGC AAGGGCATTATTGACCTGTGGCCATTGATGGTGCCCCCCCCACACACGTA TATCAAACACATGATATATAGTGTTATGTTAGTTGCCAAGATAGTGAGAT ACCTTTCCATTCCAGAGGCAGAAGAAGTATACCTCAAGTTTCCTCAGCGG TAAAATTGACCATTGTTTGTGGTATCTATGTCATTGCTTTGACATGAGGG TGTTGTGGAGGAATATTCTCATGTATGTTTTTCGGATGGAAGATGTCTTT GTCTCTTTTGCAATATACACGACATCTCTTCCACCCAATGAAACTGACTG TACCGTTCACCATTGATGTTGAGTAATTTATAGTATTATTCTTAAGTATA ATGTGTTTTCACCATTGGAGTGGTTGGTATATTATTAAAATAGGGTCTGT TTATCTACTTCTATTATTGCATTGTGATAATTGATTTTGTGTGTTAATAT ACACTCTACTATTACTACAACATGAAAAAAAGGAAAGTTGAAAAAAATAT ATGTATGTACGGTGTTTTTTTTTTCTTTTTTGAAGTTTGAACATTGTTGG GGATAACAATAGTATGCACAACAAGTACCTAATAATAGTAACAGTACCAT GACCTACTGTCCCTAGTGTTATAGTGGCATCTCAATGTTAGACAAGTATC AGATTCCAGATTGCTACATGGTTTAATCTGTGGGCCATTACCCCGCAAGT TGTGTGGTTTTCCCCAACAGTTAATGTCTGTCTCTATATATTTCCCAGTA AACCCTTCATGACCTGGACTCTCCCCCTACCTCCCATCTTTGTCCTCCTT TTGTAGAGAGTTGGAAAGGCGTTCCAGTCGGGATTTGATTTTTTTATTCT CCTCATTATCATTATTATTATCGTTGCATTTTTTTTGTAATCATTACTAT ATTCAGGAGAAAGGTGTTCTTCTATGTACTGATGTGGCAGCCAGGGGCCT AGATATCCCTTCAGTGGACTGGATCATCCAGTATGATCCTCCTGACCAGA CAGCGGAATATATCCATAGGGTGGGAAGGACTGCAAGGGGGCAGAGCAGC AAGGGCAGGTGACACAATCTGACACGATATGATATGATATGATATGATAT GATAAGGTTTACTTATTATATACCATGTGAGGGAGGACTTGTACCTTTAC GGGTAAGCCATTTTAGCAGTTCTAAGACATGCCTAACAATAAATAATAAT AGTAAGAACTGTCTTAACTTGTATACCTGTAGTGCAAAGTTAAACTGGTT CAATTCACTTCCATGTATTGTAATAGAAGAGTAATTGTCTTTAAGACGTG CACATGCATCTATTGCTGTTGTTACAAGGTAAAATAGAAAATAGTGTGTT GGGCGTATGATACTTCAAGAGTGAACTACTTCAAGAGTAAACTACTTCAA GAGGAACACATTATTTTAGTGGATATGGTGCAAATAGAGCTGGTGCGAGT GTGGATGGTATGGTGCTTCCTTTCTACCAAAATACACTTTGTTATCTGAT TCTTTTCTTGCAGTAGCCTTGTACAGTGTAGGTACAGTAGTGGTGGGAAA TGGACACAAGAATGTACCAGTGCTTTGTTAGTCTAGTAAGGACAATGTGA GGGTAGTACCCCTATGAGAGAAGTATGATGTGAGCTTTCTGGTATGATAC TCCTTCTGTGTGTGTTATTGAATCGTCATGTTTGTGTGTTTGTGTGTGTT TGTGTGTATTTTGTTAAGAGCGCTGCTGTTCTTGCTGCCAGAGGAGATTG GTTTCCTCCGCTACCTCAAGGCTGCAAAGGTGAGGAGAGTCCAATGCTTT GTTCTATTATTGAACAATGGAGCAGAACAAAAATGGAAAAAATATATGTT GCCTTCACAAATATTTGAACCCTGACCCTAATCCCCCCCCCCCCCCAACT ATTATACAAAAGGCTAAGTATTTGCGCGCAAGTTACTGAGCTACCGCTGT ATTTTGAAAGTCATTGTTATAATTATTTTCAATAGTAATAGTGTCGATCC TTATGTGTGGGTGTGTTATATGTGGGAAGGACAGTAGAGGCTATTTTCTC CTTTGAAATACCATTTCATTCTCAAACTACAGTGTGATACTATTACCATA CCCTACTGTGTGTGTACCTTCTTTTGTCTCCCCTTCTTGCAAATCATAAG TCTTTTTTTGAGGTGCGACAGTTTGAGAAACGTTACTATAGTAGATTGTA AAAACGGATAAACGCGGGTGGGTGATTTTGTTCTACCGTGATTTCTCATT ATTTCGTATAGAGTATTTTGGATGTTGCTCCGTCAATTTTCATCACTGCT GCCACTGTTGTGAGGCGAAGCTGAATGAGTATGAGTTTCCAGTGAAAAAA GCGGCCAATGCACAGTCCCAGTTAGGACGCCTGATTGAGAAGAACTACTA CCTCAACAAGTCTGCAAGGGAGGTAAGTGATCTGAGGACGCAACAAATGA GGAGGAGGAGGGGATAGGTGGGTATATATTCCATTCAAATGTTGTTGGAT GTTACTGTATTACCTACCCCGTGTTGGTCGTCATTTTGCTTGAAGCGTAA CTTTTCATATTTTTGGTATTGCATATTTTTCGAGTACTATGTTGCATATA CATAGATGCGTATGTGGAGTCATTTCTGAGCTCGCCTTCCCTACCACTGG AAACAAACACCCTTTGAAACCATATTGATATTATTGACTGGCAACTCTCC TGTCTATTTCTTCCTTTTTTTTCTGTCTCGTGATCGAATATCAAATAAAA TAAATCAGGCGTATCGCTCGTACTTGCTGGCATATTCATCCCACTCCCTG AAAAATATCTACAATGTACATGAGCTGGATCTCCAGGCGGTGGCCAGAGC ATTTGGGTTCACAGTGCCTCCTCGGGTG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig759:258..3935+

>mRNA_C-tenellus_contig759.1.1 ID=mRNA_C-tenellus_contig759.1.1|Name=mRNA_C-tenellus_contig759.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=669bp|location=Sequence derived from alignment at C-tenellus_contig759:258..3935+ (Choristocarpus tenellus KU2346)
CAGGGGTATGTGGTGTGCCCCAGCGAAAAGAGATTCCTGTTACTTTTCAC
CTTCTTTAAGAAGAACAAGAAGAACAAGATCAAGAAGATCATGGTGTTTT
TCTCCCCCTGCAATTCTGTGAAATTCCACTCAGAGCTCCTCAATTATATT
GATATACCAGTCATGGATATCCATGGACGTCAGAAGCAGCAGAAGCGAAC
AACTTCATTCTTCCAATTTTGTCGTCAGGAGAAAGGTGTTCTTCTATGTA
CTGATGTGGCAGCCAGGGGCCTAGATATCCCTTCAGTGGACTGGATCATC
CAGTATGATCCTCCTGACCAGACAGCGGAATATATCCATAGGGTGGGAAG
GACTGCAAGGGGGCAGAGCAGCAAGGGCAGAGCGCTGCTGTTCTTGCTGC
CAGAGGAGATTGGTTTCCTCCGCTACCTCAAGGCTGCAAAGGCGAAGCTG
AATGAGTATGAGTTTCCAGTGAAAAAAGCGGCCAATGCACAGTCCCAGTT
AGGACGCCTGATTGAGAAGAACTACTACCTCAACAAGTCTGCAAGGGAGG
CGTATCGCTCGTACTTGCTGGCATATTCATCCCACTCCCTGAAAAATATC
TACAATGTACATGAGCTGGATCTCCAGGCGGTGGCCAGAGCATTTGGGTT
CACAGTGCCTCCTCGGGTG
back to top