mRNA_C-tenellus_contig7521.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7521.4.1
Unique NamemRNA_C-tenellus_contig7521.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7521.4.1 vs. uniprot
Match: D8LME5_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME5_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 3.300e-18
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:   22 PEWALNLSLTWEGAVLEDVELRHDLLGSLLGLPVDLPYAHIRKATLHIPWYTLFLG 189
            PE +L+LSL WEG VL+DVELR D L  LLGLPVD+P+A +R+A LH+PWYTL LG
Sbjct:  191 PESSLDLSLRWEGVVLKDVELRRDFLSELLGLPVDVPHAFVRRAVLHLPWYTLLLG 246
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7521.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LME5_ECTSI3.300e-1867.86Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7521contigC-tenellus_contig7521:6029..6220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size192
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionVacuolar protein sorting-associated protein 13A N-terminal domain
Ec32 orthologEc-05_002470.1
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790042.312208-CDS-C-tenellus_contig7521:6028..62201680790042.312208-CDS-C-tenellus_contig7521:6028..6220Choristocarpus tenellus KU2346CDSC-tenellus_contig7521 6029..6220 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7521.4.1prot_C-tenellus_contig7521.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7521 6029..6220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7521.4.1

>prot_C-tenellus_contig7521.4.1 ID=prot_C-tenellus_contig7521.4.1|Name=mRNA_C-tenellus_contig7521.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=64bp
GGGRGREPEWALNLSLTWEGAVLEDVELRHDLLGSLLGLPVDLPYAHIRK
ATLHIPWYTLFLG*
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mRNA from alignment at C-tenellus_contig7521:6029..6220+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7521.4.1 ID=mRNA_C-tenellus_contig7521.4.1|Name=mRNA_C-tenellus_contig7521.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=192bp|location=Sequence derived from alignment at C-tenellus_contig7521:6029..6220+ (Choristocarpus tenellus KU2346)
GGTGGTGGTCGAGGGAGGGAGCCGGAATGGGCCCTAAACCTATCGCTGAC
TTGGGAGGGGGCTGTTCTGGAGGATGTGGAACTACGGCACGACCTTTTAG
GAAGTCTGTTGGGACTGCCGGTGGATCTCCCTTACGCTCACATTAGGAAG
GCGACACTTCATATCCCCTGGTATACACTTTTCTTGGGGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig7521:6029..6220+

>mRNA_C-tenellus_contig7521.4.1 ID=mRNA_C-tenellus_contig7521.4.1|Name=mRNA_C-tenellus_contig7521.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=192bp|location=Sequence derived from alignment at C-tenellus_contig7521:6029..6220+ (Choristocarpus tenellus KU2346)
GGTGGTGGTCGAGGGAGGGAGCCGGAATGGGCCCTAAACCTATCGCTGAC
TTGGGAGGGGGCTGTTCTGGAGGATGTGGAACTACGGCACGACCTTTTAG
GAAGTCTGTTGGGACTGCCGGTGGATCTCCCTTACGCTCACATTAGGAAG
GCGACACTTCATATCCCCTGGTATACACTTTTCTTGGGGTGA
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