mRNA_C-tenellus_contig730.5.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig730.5.2
Unique NamemRNA_C-tenellus_contig730.5.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig730.5.2 vs. uniprot
Match: D8LMF6_ECTSI (cGMP-dependent protein kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF6_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 1.200e-54
Identity = 95/144 (65.97%), Postives = 110/144 (76.39%), Query Frame = 3
Query:    3 VRHQGHSIAVDFWGLGVLIYEMTHGISPFAADSEMNIYNKISSHRGGELVYPSSFSPALCDLLDRLLHHDPGERLGAREGDVKTIMTHQWFAGFDWGGVQRGESFNQDLSHNCHLKIQKIMQTEGGLPAEGKDYTGDQGIWERF 434
            VRHQ HS AVDFWGLGVLIYE+++G SPF ADSEM IYNKISSHR G L  P+SF+PA+ D +DRLLHHDP ERLG++  D+  I THQWFAGFDWGGVQ GE +NQ+L    H K QK+   EG LP  GK Y+ DQ IW+RF
Sbjct:  943 VRHQEHSKAVDFWGLGVLIYELSYGTSPFQADSEMTIYNKISSHRAGMLEIPTSFAPAMGDFIDRLLHHDPQERLGSKADDITAIKTHQWFAGFDWGGVQAGEYYNQELQQLAHAKAQKLAGQEGELPDGGKGYSDDQSIWQRF 1086          
BLAST of mRNA_C-tenellus_contig730.5.2 vs. uniprot
Match: A0A7S2V8F4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8F4_9STRA)

HSP 1 Score: 122 bits (305), Expect = 5.310e-27
Identity = 59/147 (40.14%), Postives = 85/147 (57.82%), Query Frame = 3
Query:    3 VRHQGHSIAVDFWGLGVLIYEMTHGISPFAADSEMNIYNKISSHRGGELVYPSSFSPALCDLLDRLLHHDPGERLGARE--GDVKTIMTHQWFAGFDWGGVQRGESFNQDLSHNCHLKIQKIMQT-EGGLPAEGKDYTGDQGIWERF 434
            VR +G  +  DFW LG+ IYE+  G SPF+AD E+++Y+ I+++R G L YP  FS  L  LL+ LLH DP +RLG  +  G V  I  H++F G DW  +  G   N  LS      + K + T +  +P  G+ +TGD  I++ F
Sbjct:  174 VRQEGSGVEQDFWALGIFIYEVLFGNSPFSADKEIDVYSNITNYRAGSLEYPEDFSDHLVSLLNGLLHPDPAQRLGCPDLDGGVAAIKQHRYFHGLDWEQLSSGGLLNTALSTIAQQLVNKAVHTAQTAIPTVGRIFTGDDSIFDGF 320          
BLAST of mRNA_C-tenellus_contig730.5.2 vs. uniprot
Match: A0A482RSU3_9ARCH (Protein kinase domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSU3_9ARCH)

HSP 1 Score: 105 bits (262), Expect = 5.320e-23
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 3
Query:    3 VRHQGHSIAVDFWGLGVLIYEMTHGISPFAADSEMNIYNKISSHRGGELVYPSSFSPALCDLLDRLLHHDPGERLGAREGDVKTIMTHQWFAGFDWGGVQRG 308
            + ++GH+ AVD+W LGVLI+EM HG  PF  D  M +Y KI     G++ YP SFS AL DL+ + L  +P +RLG  +G +  IM H+WF  FDW G+  G
Sbjct:   13 ILNKGHNQAVDYWALGVLIFEMMHGWPPFYHDQPMRVYEKIIM---GKVAYPESFSKALEDLVSKFLVTNPSKRLGNMKGGMNDIMKHKWFGAFDWAGLAAG 111          
BLAST of mRNA_C-tenellus_contig730.5.2 vs. uniprot
Match: B8C3C3_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3C3_THAPS)

HSP 1 Score: 101 bits (252), Expect = 4.710e-20
Identity = 45/99 (45.45%), Postives = 64/99 (64.65%), Query Frame = 3
Query:    3 VRHQGHSIAVDFWGLGVLIYEMTHGISPFAADSEMNIYNKISSHRGGELVYPSSFSPALCDLLDRLLHHDPGERLGAREGDVKTIMTHQWFAGFDWGGV 299
            + ++G+  AVD+WGLGVLIYEM+ G++PF A+S M  Y K+ S   G +  P+ FS A   L+ +LLH    +RLG   G   T+M H W++GFDW G+
Sbjct:  176 ILNEGYDWAVDYWGLGVLIYEMSAGVAPFFAESPMETYEKVLS---GHVHIPAHFSRACASLIKKLLHTSQSKRLGRTVGGATTVMCHPWYSGFDWDGL 271          
BLAST of mRNA_C-tenellus_contig730.5.2 vs. uniprot
Match: A0A7S2PHB5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PHB5_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.460e-19
Identity = 43/97 (44.33%), Postives = 60/97 (61.86%), Query Frame = 3
Query:    9 HQGHSIAVDFWGLGVLIYEMTHGISPFAADSEMNIYNKISSHRGGELVYPSSFSPALCDLLDRLLHHDPGERLGAREGDVKTIMTHQWFAGFDWGGV 299
            ++G+   VD+WGLGVLIYEMT G++PF A+S M  Y K  S   G +  P+ FS +  +L+ +LLH    +RLG   G   T+M H WF+ FDW  +
Sbjct:    1 NEGYDWGVDYWGLGVLIYEMTAGVAPFYAESPMETYEKALS---GHVHMPTHFSRSAANLIKKLLHTSQAKRLGRTVGGATTVMCHPWFSNFDWDAL 94          
BLAST of mRNA_C-tenellus_contig730.5.2 vs. uniprot
Match: X0RYE1_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0RYE1_9ZZZZ)

HSP 1 Score: 100 bits (248), Expect = 2.230e-19
Identity = 47/96 (48.96%), Postives = 60/96 (62.50%), Query Frame = 3
Query:    3 VRHQGHSIAVDFWGLGVLIYEMTHGISPFAADSEMNIYNKISSHRGGELVYPSSFSPALCDLLDRLLHHDPGERLGAREGDVKTIMTHQWFAGFDW 290
            + ++GH  AVD+W LGVLIYEMT G  PF AD  M +Y KI S   G +  PS FS  L DL+ +LL     +RLG  +G    +M H+WF+GFDW
Sbjct:  173 ILNEGHDWAVDYWALGVLIYEMTAGSPPFYADDPMEVYEKILS---GHVSIPSHFSRGLSDLVKKLLRTYQSKRLGRTKGGTAAVMKHKWFSGFDW 265          
BLAST of mRNA_C-tenellus_contig730.5.2 vs. uniprot
Match: A0A7S0I3B5_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I3B5_9EUKA)

HSP 1 Score: 103 bits (257), Expect = 2.980e-19
Identity = 60/152 (39.47%), Postives = 83/152 (54.61%), Query Frame = 3
Query:    3 VRHQGHSIAVDFWGLGVLIYEMTHGISPFA-----ADSEMNIYNKISSHRGGELVYPSSFSPA--LCDLLDRLLHHDPGERLGAREGDVKTIMTHQWFAGFDWGGVQRGESFNQDLSHNCHLKIQKIMQTEGG-LPAEGKDYTGDQGIWERF 434
            V  QGHS+ VDFW LGVLIYEM  G  P+      ADSE+ IYN+ISSH  G +  P  FS +  L  LL+ LL  +P +RLG R    + I T++WF+GF+W   + GE  +   ++ C   +    +T    +P     Y G+   +E F
Sbjct:  922 VSGQGHSLPVDFWALGVLIYEMLTGSGPWITGDPNADSEVAIYNRISSHAAGGMPLPKDFSLSDDLAQLLNDLLAPNPVKRLGCRGAGAEEIKTYKWFSGFNWDECEAGE-MSAPHANLCTEALAAAEKTASKCMPEAAGSYKGEAAWYEGF 1072          
BLAST of mRNA_C-tenellus_contig730.5.2 vs. uniprot
Match: K0S242_THAOC (AGC-kinase C-terminal domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S242_THAOC)

HSP 1 Score: 99.8 bits (247), Expect = 2.410e-18
Identity = 47/99 (47.47%), Postives = 63/99 (63.64%), Query Frame = 3
Query:    3 VRHQGHSIAVDFWGLGVLIYEMTHGISPFAADSEMNIYNKISSHRGGELVYPSSFSPALCDLLDRLLHHDPGERLGAREGDVKTIMTHQWFAGFDWGGV 299
            V ++GH  AVD+W LGVLIYEMT+G+ PF AD  M +Y KI S   G +  PS FS  L DL+ +LL     +RLG  +G   ++M  +WF+GFDW  +
Sbjct:  426 VLNEGHDWAVDYWALGVLIYEMTNGVPPFYADEPMGVYEKILS---GIVTVPSHFSRGLGDLVKKLLKTFQSKRLGRTKGGAGSVMKQKWFSGFDWNSL 521          
BLAST of mRNA_C-tenellus_contig730.5.2 vs. uniprot
Match: B8C5K5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5K5_THAPS)

HSP 1 Score: 96.7 bits (239), Expect = 2.990e-18
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 3
Query:    3 VRHQGHSIAVDFWGLGVLIYEMTHGISPFAADSEMNIYNKISSHRGGELVYPSSFSPALCDLLDRLLHHDPGERLGAREGDVKTIMTHQWFAGFDWGGV 299
            + ++GH  AVD+W LGVLIYEMT G  PF A+  M +Y KI S   G +  PS FS  L +L+ +LL     +RLG  +G   ++M  +WF+GFDW  +
Sbjct:  187 ILNEGHDWAVDYWALGVLIYEMTAGTPPFYAEDPMEVYEKILS---GHVTIPSHFSRGLAELVKKLLKTFQSKRLGRTKGGASSVMKQKWFSGFDWNSL 282          
BLAST of mRNA_C-tenellus_contig730.5.2 vs. uniprot
Match: A0A7S2LD17_9STRA (cGMP-dependent protein kinase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LD17_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 4.720e-18
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 3
Query:    3 VRHQGHSIAVDFWGLGVLIYEMTHGISPFAADSEMNIYNKISSHRGGELVYPSSFSPALCDLLDRLLHHDPGERLGAREGDVKTIMTHQWFAGFDWGGV 299
            + ++GH + VD+W LGVL+YEMT G  PF AD  M +Y KI S   G +  P+ FS  L DL+ +LL     +RLG  +G    +M H+WF+GFDW  +
Sbjct:  578 ILNEGHDMGVDYWALGVLVYEMTAGSPPFYADDPMEVYEKILS---GHIFIPAYFSRGLSDLVKKLLKTYQSKRLGKTKGGTSAVMKHKWFSGFDWDAL 673          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig730.5.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMF6_ECTSI1.200e-5465.97cGMP-dependent protein kinase n=2 Tax=Ectocarpus T... [more]
A0A7S2V8F4_9STRA5.310e-2740.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A482RSU3_9ARCH5.320e-2347.06Protein kinase domain-containing protein n=1 Tax=a... [more]
B8C3C3_THAPS4.710e-2045.45Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S2PHB5_9STRA1.460e-1944.33Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
X0RYE1_9ZZZZ2.230e-1948.96Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A7S0I3B5_9EUKA2.980e-1939.47Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
K0S242_THAOC2.410e-1847.47AGC-kinase C-terminal domain-containing protein n=... [more]
B8C5K5_THAPS2.990e-1844.44Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2LD17_9STRA4.720e-1844.44cGMP-dependent protein kinase n=1 Tax=Leptocylindr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig730contigC-tenellus_contig730:12864..16980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LMF6
PFAMsPP2C,Pkinase,cNMP_binding
Model size1800
Max annot lvl2759|Eukaryota
KEGG koko:K07376,ko:K14803,ko:K19477
KEGG Pathwayko04022,ko04270,ko04540,ko04611,ko04713,ko04714,ko04730,ko04740,ko04923,ko04924,ko04970,map04022,map04270,map04540,map04611,map04713,map04714,map04730,map04740,map04923,map04924,map04970
KEGG ModuleM00694
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944
Exons4
Evalue1.47e-48
EggNOG OGsCOG0631@1|root,COG0664@1|root,KOG0614@2759|Eukaryota,KOG0698@2759|Eukaryota
EC2.7.11.12,3.1.3.16
Descriptionprotein serine/threonine phosphatase activity
Cds size372
COG categoryT
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko01009,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig730.5.2prot_C-tenellus_contig730.5.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig730 14227..16915 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790027.0359066-UTR-C-tenellus_contig730:12863..142261680790027.0359066-UTR-C-tenellus_contig730:12863..14226Choristocarpus tenellus KU2346UTRC-tenellus_contig730 12864..14226 -
1680790027.0992038-UTR-C-tenellus_contig730:16915..169801680790027.0992038-UTR-C-tenellus_contig730:16915..16980Choristocarpus tenellus KU2346UTRC-tenellus_contig730 16916..16980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790027.0530574-CDS-C-tenellus_contig730:14226..143401680790027.0530574-CDS-C-tenellus_contig730:14226..14340Choristocarpus tenellus KU2346CDSC-tenellus_contig730 14227..14340 -
1680790027.0694542-CDS-C-tenellus_contig730:14607..147131680790027.0694542-CDS-C-tenellus_contig730:14607..14713Choristocarpus tenellus KU2346CDSC-tenellus_contig730 14608..14713 -
1680790027.0785358-CDS-C-tenellus_contig730:16511..166351680790027.0785358-CDS-C-tenellus_contig730:16511..16635Choristocarpus tenellus KU2346CDSC-tenellus_contig730 16512..16635 -
1680790027.0877957-CDS-C-tenellus_contig730:16887..169151680790027.0877957-CDS-C-tenellus_contig730:16887..16915Choristocarpus tenellus KU2346CDSC-tenellus_contig730 16888..16915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig730.5.2

>prot_C-tenellus_contig730.5.2 ID=prot_C-tenellus_contig730.5.2|Name=mRNA_C-tenellus_contig730.5.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=124bp
MTHGISPFAADSEMNIYNKISSHRGGELVYPSSFSPALCDLLDRLLHHDP
GERLGAREGDVKTIMTHQWFAGFDWGGVQRGESFNQDLSHNCHLKIQKIM
QTEGGLPAEGKDYTGDQGIWERF*
back to top

mRNA from alignment at C-tenellus_contig730:12864..16980-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig730.5.2 ID=mRNA_C-tenellus_contig730.5.2|Name=mRNA_C-tenellus_contig730.5.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4117bp|location=Sequence derived from alignment at C-tenellus_contig730:12864..16980- (Choristocarpus tenellus KU2346)
AGGTTCGGCATCAAGGTCATTCTATTGCTGTGGATTTTTGGGGACTTGGC GTACTCATCTATGAAATGACACATGGAATTTCTCCATTTGCAGGTGAGCA TGTGTCCAATAGGGATAAGGGCTAACACCTTGAGAGTCAAGATTTTACCA ATCTATTTTGAGAGACCAATGCTGTACAACAATGGAGATAAGTTGAAGTT ACTGGGGTGTTGATGACGGCTATACCCAATTAGAGACTTTGCTTTGATAC TAGTAAACTATATATATGTATAGTATAGTATAGTTGTCTGTTGACATTCG TTGCCCTTGTTCATTCCTACCATATGGCCCTTCCTCTCTAACCAGCTGAT TCAGAGATGAACATATACAACAAGATCAGTTCTCACCGGGGAGGAGAGTT AGTCTATCCATCATCTTTCTCACCTGCATTGTGTGACCTCTTGGACAGAC TGTTACATCATGACCCAGGGTAAGTACCAATATTTCATAATTGACTGTAG TAGAAGGGTTAGTTGGTTCTTCATAGTTGACTGTGGTAGAGGGGTTAGTC AGTAGTTGTTGGTTTGGTTTGTCACTGGTAGGAATGGGAAGTGTTGACCA GTGTGTTGTACCTCTGATCACAGGTTGGGCTTGTCCCCTGACTGATGTGA TATCAACAACAAAAATTAATAATAATAATGGTAGAAGAGCAAACAGAACA GGGTATTCTGGGACTTGCTTACAGGGTTTTTTATTTTGGATCAGACCAAC CCATTGCATTTTAGAAATATAAGTTAGGGTTAGGGTTAGGGTTAGGGTTA CACTTCTATCTCAACTGGCTGCATACTAGTCCGGAATTTTCCTGATCACT GCATACAAGAAAGTCGAGAGTTGTTGAAGTGGTATGGCGCTATACATTTA CCGTTGAGTGGTGCAGTCGATTTTTACTCATACCCTCAACAGGTTCTCTC TGAAGTCTTAGCTGTGCTAATGAGTAAATGTTAACTCTTTTGATATTGTA TTATCATTTTCTTCATTTACTTGGGGGTGAATTTTGATGCCTTATCTTGA CTTGACCTGTGTGCTGTTTTAATGGTAGTTGGAGGAAAATTATCTGCATT GGCTGAAAGGCATACATACAGTATTGCAGCAACCTTTGTTGTGAATCTGT TCATCAAAGGGGGTTAGATCGTGGAGAGGGAAAATATGCCATTTCAAGGT TGAGGCCCTTTTCCACAACTGTCAGATCCTATCTTTGATGTCCTATCTGT GATGTCCTGTACAGCCTTTGATCATGTCTTGTTCCCAGATCTATCCTTGA AGATTGATAGTTGTTCCACCAAATGTTGAACTATTTAGTGGATAAATGTG AAACCTGTATGTTAGAAATGAAATATGACATACTGACAAGAATGGTGTAC TGCTACTCTTGGGACTAACTAAACCCACAACACTTTGCGGTCATTATTAT TAACTATTAACTATCCAAGTATTAACTCTTTACCTGTTTTATTGTGTTAT CATTGATACTGTTGCCACTACCACCGTTGTGCCATTATTGTACTTGATAC AACCGGCACATACACAATATGTACATAAGTCAATACAGTCCAAAATGAAG GGTGTTGCATAGTGCACCAGTGTTGTGACAATGTGTTGCAAAGGGTGATT GATCAGTTGTAGCAGTTACACTCTCTGCAAGGTGATGTAGCTTTTGAAAA ATCACTCCTTCTAACAGTTTCATGGTTTTTGTGGTGTATTGAGGTGGCGT GTGCTGTGTACATTCTTTGTGTGGTTGTTTAATGTGTGTTTATAGAGGTG AAATGAAAGCAACCTGATTCCATTGGTTGAGGCCTGTTGCCTGGAGTTTG TTAGTGTATGTTCATTTGTGCATGGGTATGTATGTATGTTGACAAGCCAT ACTTGTGCTAAACATGCAAAGCATTGTGATGAGGGGATGGCTGATAGCAG TTGCAATGTTCACACACCTTCCCGCACCTTCCCACACCTTTTCTAGTAGC AACTACTACTTACATACTCTACTACATGTAGTTTTTGTGTGTATTGGGTT GGAGTTACTAAATGTCATCATTAGCATGTAAAATAAATAAATAAATGAGA GGTTATCAAAAGGAGGTTGTGTGTTTGTATCCTGCAATAGTGTCTACTTT CAATATTTGCCTGCTTTCACTATTTTGGAGCTGAGAGGTACTTCAATGTT GATATTAATTTTTGTCCTGATGATAATTTGTTGTGGTGTCTTTGCAATGT ATCCCCATGTCATGCAGGGAACGCCTTGGGGCGAGGGAGGGTGATGTGAA GACCATCATGACACACCAATGGTTTGCCGGCTTTGACTGGGGAGGTGTCC AAAGGGGGGAAAGCTTCAACCAGGTGGGCACATGTTATTGTATTGATAGG ACAATTGTGTACTCAGCTCATGATCTGTGTTGACATTGTGCTGTTAGAAA TGTGTGCATTGTGAACGATACATTATTTATAGTACATTATGCATTATACA TTATACAAAACACATTATTGGTGATGCTTGTTCAAGGCTGTATGGTATGT TTATACTATCACCTGGAGCACCTAACTCTTGACCCATGACATTCCTTCCC GATTGGTGCCTTGATTGTTTTGGGGGGGATATATGTACAGGACCTGAGTC ACAATTGCCACCTGAAGATACAGAAAATCATGCAAACGGAGGGGGGGCTG CCTGCTGAGGGCAAGGACTACACAGGGGATCAAGGGATTTGGGAACGCTT TTAGTGCCCCCACAGTATGTGTGCGTGGCTTCAGAAGAATTGGGTTTTTA GGGTGGGGATACAGTGTTCCTTTTTTCATTGTTTCAGTTTTGCTGAGAGG GACCCTGGTTGCCTTTCCAGCCACTTCAAAGATAAGTTGTTGGAGTTTTC ATTTTTGTGCAGCTTCCTTGAAGTAAGTACACTTCGGAAATGTGCTGTAT TATATGCTATTAAATGTGTTGTATGCCTGGATGAGGATGTGTTTCATCGG GTAGTCGTTTCCGTATGTGAGTCCCTTCCCCTTCTATCCCTCTGCTCGGA GAGATTCCTTGGCCTTTTTCTTATGTGGGTGATAAGTGGTAAGGTACTAA ACTAAGCACTGCCCAGCTGGCAGCGTACATGAGATTGAAATTGTCACTAT GTAGGAGTATGATGAGATTGTTGTATGGTGTTGTGGAGAAATTATAGGTT TGGAGTTCAGACTGCGTTTTCATTAATGTGATGAGGAGCTACACAAAATC GAGTTTATGCCCATTTTTGAGGTTTGTATGCATTTGATCACACATCCGCC TTCATGACTACAGCTCATGAGGTCACAAATACAGCATGGCCTGCTAATGT GGAATAGAAATTGTTTGCCTCAGTAGGGCGTGCAACCTTTGTTAGGTGCA TTCCTGGGGGAGATAAAGAAAAAAAAGGTGAGTATTCAACTGTGTTGTGA TTCTTTTCTCTAAATGTGCACTTGCCAGCAACCATCATGGGCAAAGAACG CAAGGACTTGAGTATGTGAAGCACAGTGAGCATCACACACCTTTTTGTCT TAGACATACTGTTTAGGTAAATTTGACATAGTTTTTCTGAGTATTCCCCT GCACTCAGTCACTTCCCTTAGACTCTGTATTTCAATTGTGGACCAGATTT TTATTTATTATTTGCCAACTACTTTTTTAAACACAGAACGTGAGATTAAT GAGAAGGTAGAAGAACCAGGGGTGGATGTTAATTTTTGATGTACTCTGCA CTCAAAGACACTTACCATTTTAGTGAGTGAGAGAATTAGGAACAATCAGG AATAGATCTCAATAGTAGTATGTCTTTAGAGGTGTTACGACCAAGCAAGG GTGATGATTGGGTTCACTAAAAAATGTAACCTAGGTTTATGAGGGATGAA TTTGTGTTGATAACATTGATGTCAACACATTGGAGCAAGTTGTGTTAGTC TTACTAGGTTGTATTAAGTAGATACCATATGGAAGAGGCCTCTCCATTTT GACCTGAGGTAGGGTTGTGCTTGGCGGATTGATTGGTGTCAAATTCTTGG TATATTTTTTCCCTAGGTCATCACCCACTTCCTCCTACGGCTAGGTTAGA AGAGTAGCAGTGTGCAC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig730:12864..16980-

>mRNA_C-tenellus_contig730.5.2 ID=mRNA_C-tenellus_contig730.5.2|Name=mRNA_C-tenellus_contig730.5.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=372bp|location=Sequence derived from alignment at C-tenellus_contig730:12864..16980- (Choristocarpus tenellus KU2346)
ATGACACATGGAATTTCTCCATTTGCAGCTGATTCAGAGATGAACATATA
CAACAAGATCAGTTCTCACCGGGGAGGAGAGTTAGTCTATCCATCATCTT
TCTCACCTGCATTGTGTGACCTCTTGGACAGACTGTTACATCATGACCCA
GGGGAACGCCTTGGGGCGAGGGAGGGTGATGTGAAGACCATCATGACACA
CCAATGGTTTGCCGGCTTTGACTGGGGAGGTGTCCAAAGGGGGGAAAGCT
TCAACCAGGACCTGAGTCACAATTGCCACCTGAAGATACAGAAAATCATG
CAAACGGAGGGGGGGCTGCCTGCTGAGGGCAAGGACTACACAGGGGATCA
AGGGATTTGGGAACGCTTTTAG
back to top