mRNA_C-tenellus_contig7257.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-tenellus_contig7257.1.1
Unique Name	mRNA_C-tenellus_contig7257.1.1
Type	mRNA
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)

Homology

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BLAST of mRNA_C-tenellus_contig7257.1.1 vs. uniprot
Match: D7FUI1_ECTSI (Ankyrin repeat protein E2_17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUI1_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 5.520e-23
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 1

Query:   91 VDGFGLCALHYAVWNGQERCVEILCANDIGRDRNGLQRSCVNLQSSKGYTALHLAASDGAQGI 279
            +D FGL ALHYA WNG  RCVEILC ND+G D  GLQRSC++L+S KG+T LHLAASDG  G+
Sbjct:    1 MDDFGLSALHYASWNGHVRCVEILCINDLGHDGAGLQRSCIDLRSIKGWTPLHLAASDGVNGM 63

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BLAST of mRNA_C-tenellus_contig7257.1.1 vs. uniprot
Match: A0A482S1M6_9ARCH (Ankyrin repeat protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1M6_9ARCH)

HSP 1 Score: 71.2 bits (173), Expect = 3.180e-14
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 1

Query:    1 MSGDLLRRKAIFGDGEGIKALLEQGANPCSVDGFGLCALHYAVWNGQERCVEILCANDIGRDRNGLQRSCVNLQSSKGYTALH 249
            MS   +R+  I    E ++ L++  AN CS+D +GL ALHYAVWNG   CV++L  N  G D  G + +C+N++S  G T  H
Sbjct:    1 MSEAKVRQACIHNRIEELEVLVKARANVCSIDEWGLTALHYAVWNGHVECVKLLVFNSHGVDSKGQKTTCLNMKSCIGLTGTH 83

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BLAST of mRNA_C-tenellus_contig7257.1.1 vs. uniprot
Match: A0A835Z6I7_9STRA (Ankyrin repeat protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6I7_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.290e-13
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 1

Query:  103 GLCALHYAVWNGQERCVEILCANDIGRDRNGLQRSCVNLQSSKGYTALHLAASD 264
            GL ALHYAV+NG   CVE+LCAN  G D NG   SC+++ S+ G TALHLAA++
Sbjct:    5 GLTALHYAVFNGNTLCVEVLCANASGHDANGHHCSCIDMVSTMGCTALHLAAAE 58

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig7257.1.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig7257.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7FUI1_ECTSI	5.520e-23	68.25	Ankyrin repeat protein E2_17 n=2 Tax=Ectocarpus Ta...	[more]
A0A482S1M6_9ARCH	3.180e-14	42.17	Ankyrin repeat protein n=1 Tax=archaeon TaxID=1906...	[more]
A0A835Z6I7_9STRA	2.290e-13	59.26	Ankyrin repeat protein (Fragment) n=1 Tax=Tribonem...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig7257	contig	C-tenellus_contig7257:104..520 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	9785.ENSLAFP00000008493
Preferred name	TRPA1
PFAMs	Ank,Ank_2,Ank_3,Ank_4,Ion_trans
Model size	279
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K04984
KEGG TC	1.A.4.6.1,1.A.4.6.2,1.A.4.6.3,1.A.4.6.5
KEGG Pathway	ko04750,map04750
Hectar predicted targeting category	other localisation
GOs	GO:0000302,GO:0001580,GO:0002791,GO:0002793,GO:0003008,GO:0003012,GO:0003674,GO:0004888,GO:0005034,GO:0005215,GO:0005216,GO:0005217,GO:0005244,GO:0005245,GO:0005261,GO:0005262,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006936,GO:0006939,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007166,GO:0007204,GO:0007600,GO:0007602,GO:0007606,GO:0007610,GO:0007638,GO:0008150,GO:0008324,GO:0009266,GO:0009314,GO:0009408,GO:0009409,GO:0009410,GO:0009416,GO:0009453,GO:0009581,GO:0009582,GO:0009583,GO:0009593,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009719,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010037,GO:0010243,GO:0010378,GO:0010646,GO:0010647,GO:0010817,GO:0014070,GO:0014074,GO:0014832,GO:0014848,GO:0015075,GO:0015085,GO:0015267,GO:0015276,GO:0015278,GO:0015318,GO:0016020,GO:0016021,GO:0016043,GO:0016048,GO:0016324,GO:0019233,GO:0019722,GO:0019725,GO:0019932,GO:0022607,GO:0022803,GO:0022832,GO:0022834,GO:0022836,GO:0022838,GO:0022839,GO:0022843,GO:0022857,GO:0022890,GO:0023041,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030003,GO:0030424,GO:0031000,GO:0031224,GO:0031226,GO:0031644,GO:0031646,GO:0032024,GO:0032421,GO:0032501,GO:0032879,GO:0032880,GO:0032991,GO:0033554,GO:0033555,GO:0034220,GO:0034605,GO:0034702,GO:0034703,GO:0035556,GO:0035690,GO:0035774,GO:0036270,GO:0038023,GO:0040011,GO:0040040,GO:0042221,GO:0042330,GO:0042331,GO:0042391,GO:0042493,GO:0042542,GO:0042592,GO:0042752,GO:0042802,GO:0042995,GO:0043005,GO:0043052,GO:0043269,GO:0043270,GO:0043279,GO:0043933,GO:0044057,GO:0044070,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0045177,GO:0046677,GO:0046873,GO:0046883,GO:0046887,GO:0046957,GO:0048265,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048878,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050796,GO:0050801,GO:0050848,GO:0050850,GO:0050877,GO:0050896,GO:0050906,GO:0050907,GO:0050909,GO:0050912,GO:0050913,GO:0050951,GO:0050954,GO:0050955,GO:0050960,GO:0050961,GO:0050965,GO:0050966,GO:0050968,GO:0050974,GO:0050982,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051209,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051240,GO:0051259,GO:0051260,GO:0051262,GO:0051282,GO:0051283,GO:0051289,GO:0051480,GO:0051606,GO:0051641,GO:0051649,GO:0051716,GO:0051930,GO:0051931,GO:0051969,GO:0052129,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0060089,GO:0060341,GO:0060401,GO:0060402,GO:0061178,GO:0065003,GO:0065007,GO:0065008,GO:0070201,GO:0070417,GO:0070588,GO:0070838,GO:0070887,GO:0071241,GO:0071244,GO:0071310,GO:0071312,GO:0071313,GO:0071407,GO:0071415,GO:0071417,GO:0071466,GO:0071495,GO:0071840,GO:0071944,GO:0072347,GO:0072503,GO:0072507,GO:0072511,GO:0090087,GO:0090276,GO:0090277,GO:0097458,GO:0097553,GO:0097603,GO:0097604,GO:0098590,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098862,GO:0098900,GO:0098908,GO:0099094,GO:0099604,GO:0120025,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902495,GO:1902531,GO:1902533,GO:1903522,GO:1903530,GO:1903532,GO:1903793,GO:1904058,GO:1904951,GO:1990351,GO:1990760
Exons	2
Evalue	0.00016
EggNOG OGs	COG0666@1\|root,KOG0510@2759\|Eukaryota,38G7Q@33154\|Opisthokonta,3BCDU@33208\|Metazoa,3D0P6@33213\|Bilateria,4896E@7711\|Chordata,491BV@7742\|Vertebrata,3J72R@40674\|Mammalia,350XX@311790\|Afrotheria
Ec32 ortholog description	Ankyrin repeat-containing domain
Ec32 ortholog	Ec-21_003800.1
Description	Transient receptor potential cation channel subfamily A member 1
Cds size	279
COG category	S
BRITE	ko00000,ko00001,ko04040

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680790023.2043862-CDS-C-tenellus_contig7257:103..286	1680790023.2043862-CDS-C-tenellus_contig7257:103..286	Choristocarpus tenellus KU2346	CDS	C-tenellus_contig7257 104..286 -
1680790023.2182984-CDS-C-tenellus_contig7257:424..520	1680790023.2182984-CDS-C-tenellus_contig7257:424..520	Choristocarpus tenellus KU2346	CDS	C-tenellus_contig7257 425..520 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig7257.1.1	prot_C-tenellus_contig7257.1.1	Choristocarpus tenellus KU2346	polypeptide	C-tenellus_contig7257 104..520 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-tenellus_contig7257:104..520-
coding sequence from alignment at C-tenellus_contig7257:104..520-

protein sequence of mRNA_C-tenellus_contig7257.1.1

>prot_C-tenellus_contig7257.1.1 ID=prot_C-tenellus_contig7257.1.1|Name=mRNA_C-tenellus_contig7257.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=93bp
MSGDLLRRKAIFGDGEGIKALLEQGANPCSVDGFGLCALHYAVWNGQERC
VEILCANDIGRDRNGLQRSCVNLQSSKGYTALHLAASDGAQGI

mRNA from alignment at C-tenellus_contig7257:104..520-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-tenellus_contig7257.1.1 ID=mRNA_C-tenellus_contig7257.1.1|Name=mRNA_C-tenellus_contig7257.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=417bp|location=Sequence derived from alignment at C-tenellus_contig7257:104..520- (Choristocarpus tenellus KU2346)
ATGAGTGGCGATCTTCTTCGACGAAAAGCTATTTTTGGCGACGGCGAGGG
TATCAAGGCCCTATTGGAGCAAGGAGCTAATCCATGCTCTGTCGATGTAA
GGAAGACATTCAACATGCAATTGAGATTTTTATCCATATATAACAAACGC
CTGTCTCCTCGTAGATGGTTGTTGTCGACCTCATCATTGAGGCATTTATT
GAACCACACCCACTCACCCACATATGTCACCCAGGGCTTTGGTCTGTGCG
CTCTACATTATGCTGTGTGGAATGGGCAGGAGCGATGTGTCGAAATCCTG
TGTGCTAACGACATCGGCAGGGACAGGAATGGACTTCAGCGGAGTTGCGT
CAACCTACAATCTTCCAAAGGGTATACAGCCCTGCATCTAGCTGCTTCAG
ATGGTGCTCAAGGTATT

Coding sequence (CDS) from alignment at C-tenellus_contig7257:104..520-

>mRNA_C-tenellus_contig7257.1.1 ID=mRNA_C-tenellus_contig7257.1.1|Name=mRNA_C-tenellus_contig7257.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=279bp|location=Sequence derived from alignment at C-tenellus_contig7257:104..520- (Choristocarpus tenellus KU2346)
ATGAGTGGCGATCTTCTTCGACGAAAAGCTATTTTTGGCGACGGCGAGGG
TATCAAGGCCCTATTGGAGCAAGGAGCTAATCCATGCTCTGTCGATGGCT
TTGGTCTGTGCGCTCTACATTATGCTGTGTGGAATGGGCAGGAGCGATGT
GTCGAAATCCTGTGTGCTAACGACATCGGCAGGGACAGGAATGGACTTCA
GCGGAGTTGCGTCAACCTACAATCTTCCAAAGGGTATACAGCCCTGCATC
TAGCTGCTTCAGATGGTGCTCAAGGTATT