mRNA_C-tenellus_contig10126.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10126.2.1
Unique NamemRNA_C-tenellus_contig10126.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10126.2.1 vs. uniprot
Match: D7FVB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB0_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 4.840e-23
Identity = 101/193 (52.33%), Postives = 116/193 (60.10%), Query Frame = 1
Query:    4 GSGLGFNASHNTSPAAGSGGS---PL--GFDMSKFRKPGEWKCQACYVKNGPENDKCLSCEASKPGAEESGGGGXXXXXXXXXXXXXXXXXXXAGFSFGG-PNSSEGEGGPRFGVRTCTPAAAXXXXXXXXXXGG-------SAVPM--GFDMSKFRKPGEWKCQACLVKNGLETSKCLSCETPKSGSTSGVA 537
            GSG G   S  +  AAG+  +   P+  GFDMSKFRKPGEWKC AC V+N P+  KCLSCE  KPGA        XXXXXXXXXXXXXXXXX   F+FG  P++                   XXXXXXXXXX         S  P   GFDMSKFRKPGEWKC ACLV+N  + +KCLSCE P+ G + G +
Sbjct: 2172 GSGGGAKTSEPSKVAAGAAAASSAPITNGFDMSKFRKPGEWKCGACLVRNPPDATKCLSCEVPKPGASAX-----XXXXXXXXXXXXXXXXXTPKFTFGVVPDAGAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSTAPTAGGFDMSKFRKPGEWKCAACLVRNPPDATKCLSCEVPRPGVSDGAS 2359          
BLAST of mRNA_C-tenellus_contig10126.2.1 vs. uniprot
Match: A0A6H5L7J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7J5_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.790e-17
Identity = 81/156 (51.92%), Postives = 91/156 (58.33%), Query Frame = 1
Query:  100 PGEWKCQACYVKNGPENDKCLSCEASKPGAEESGGGGXXXXXXXXXXXXXXXXXXXAGFSFG--------GPNSSEGEGGPRFGVRTCTPAAAXXXXXXXXXXGGSAVPM--GFDMSKFRKPGEWKCQACLVKNGLETSKCLSCETPKSGSTSGVA 537
            PGEWKC AC V+N P+  KCLSCE  KPGA  +      XXXXXXXXXXXXXXXXX  F+FG                               XXXXXXXX    S  P   GFDMSKFRKPGEWKC ACLV+N  + +KCLSCE PK G++ G +
Sbjct: 2457 PGEWKCGACLVRNPPDATKCLSCEVPKPGASPAA-----XXXXXXXXXXXXXXXXXPKFTFGVVPDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASTSTAPTAGGFDMSKFRKPGEWKCDACLVRNPPDATKCLSCEVPKPGASGGAS 2607          
BLAST of mRNA_C-tenellus_contig10126.2.1 vs. uniprot
Match: UPI0018ED945A (ranBP2-like and GRIP domain-containing protein 3 isoform X4 n=7 Tax=Micropterus TaxID=27705 RepID=UPI0018ED945A)

HSP 1 Score: 65.5 bits (158), Expect = 3.830e-9
Identity = 43/156 (27.56%), Postives = 56/156 (35.90%), Query Frame = 1
Query:   43 PAAGSGGSPLGFDMSKFRKPGEWKCQACYVKNGPENDKCLSCEASKPGAEESGGGGXXXXXXXXXXXXXXXXXXXAGFSFGGPNSSEGEGGPRFGVRTCTPAAAXXXXXXXXXXGGSAVPMGFDMSKFRKPGEWKCQACLVKNGLETSKCLSCETP 510
            P+  + GS  G   SK  KPG+W C  C V+N    DKC+SC+A K                                                   T T   A           GSAV  GF     +KPG+W C  C V+N   T KC++C++P
Sbjct: 1513 PSISAMGSGFGAQFSK--KPGQWDCDICEVRNEASTDKCISCKALKA----------------------------------------------LPKTTATAQTAPAADAPAVQPSGSAVGSGFGAQFSKKPGQWDCDVCEVRNEASTDKCVACKSP 1620          
BLAST of mRNA_C-tenellus_contig10126.2.1 vs. uniprot
Match: A0A210QD00_MIZYE (RANBP2-like and GRIP domain-containing protein 8 n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210QD00_MIZYE)

HSP 1 Score: 65.1 bits (157), Expect = 5.170e-9
Identity = 43/141 (30.50%), Postives = 59/141 (41.84%), Query Frame = 1
Query:  103 GEWKCQACYVKNGPENDKCLSCEASKPGAEESGGGGXXXXXXXXXXXXXXXXXXXAGFSFGGPNSSEGEGGPRFGVRTCTPAAAXXXXXXXXXXGGSAVPMGFDMSKFRKP--GEWKCQACLVKNGLETSKCLSCETPKSG 519
            G W+C  CYV N P+  KC++C+A KPG + S                       +GF FG    S G GG +FG                   GG   P    +S+  +P  G W+C+ C V N  +  KC++C T K G
Sbjct: 1544 GSWECNGCYVSNKPDVQKCVACQALKPGLKSS---------------DVKSSPASSGFKFG---VSSG-GGFKFGKAPAESETKTTPSVSKPAAGGK--PGQQSLSEMFRPASGNWECEGCYVSNKADVQKCVACSTLKPG 1663          
BLAST of mRNA_C-tenellus_contig10126.2.1 vs. uniprot
Match: A0A673XYI3_SALTR (E3 SUMO-protein ligase RanBP2-like n=1 Tax=Salmo trutta TaxID=8032 RepID=A0A673XYI3_SALTR)

HSP 1 Score: 65.1 bits (157), Expect = 5.170e-9
Identity = 41/146 (28.08%), Postives = 58/146 (39.73%), Query Frame = 1
Query:   94 RKPGEWKCQACYVKNGPENDKCLSCEASKPGAEESGGGGXXXXXXXXXXXXXXXXXXXAGFSFG------GPNSSEGEGGPRFGVRTC-TPAAAXXXXXXXXXXGGSAVPMGFDMSKFRKPGEWKCQACLVKNGLETSKCLSCETP 510
            +K  EW C  C V+N  +  +C+SC+ + P    +G                       GF+FG         SS G  G  FG  +C TP  +             +   GF     +KPG+W C  C V+N    + CLSC+TP
Sbjct: 1311 KKYEEWDCNVCCVRNAAKVMQCVSCQTANPNVPSNGAASV------------------GGFTFGFGADSSKDTSSSGSIGKGFGCLSCQTPNPSGKPAAGGPALATLSNGSGFGAQFSKKPGQWDCDTCAVRNEASANSCLSCQTP 1438          
BLAST of mRNA_C-tenellus_contig10126.2.1 vs. uniprot
Match: A0A7L1RQL7_9PASS (NU153 protein (Fragment) n=1 Tax=Locustella ochotensis TaxID=187437 RepID=A0A7L1RQL7_9PASS)

HSP 1 Score: 64.3 bits (155), Expect = 9.150e-9
Identity = 58/182 (31.87%), Postives = 78/182 (42.86%), Query Frame = 1
Query:   25 ASHNTSPAAGSGGSPLGFDMSKFRKPGEWKCQACYVKNGPENDKCLSCEASKPGAEESGGGGXXXXXXXXXXXXXXXXXXXAGFSFG-GPNSSEGEGGPRFGVRTC-TPAAAXXXXXXXXXXGGSAVPM-------------GF-DMSKFRKP-GEWKCQACLVKNGLETSKCLSCETPKSG 519
            +S  T P AG+    LGFD      P  W C  C V+N PE  KC++CE  KPG                     XXXXX    + G G    + +G     V      A             G++VP+             GF D+ KF+KP G W+C+ACLV+N  E +KC++C+  K G
Sbjct:  665 SSKTTVPTAGT----LGFDDKFKPAPNTWDCDTCLVQNKPEATKCIACETPKPGTGVMPALTMPTVTDSLVTVTSXXXXXGTTVTLGFGDKFKQPKGSWNCSVCLLQNKAEDSKCVACQSEKPGTSVPVTSSSVSAFSASSGGFLDLDKFKKPEGSWECEACLVQNKAEATKCIACDNAKPG 842          
BLAST of mRNA_C-tenellus_contig10126.2.1 vs. uniprot
Match: UPI0015AB4EAB (E3 SUMO-protein ligase RanBP2 isoform X2 n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015AB4EAB)

HSP 1 Score: 64.3 bits (155), Expect = 9.600e-9
Identity = 42/153 (27.45%), Postives = 56/153 (36.60%), Query Frame = 1
Query:   70 LGFDMSKFRKPGEWKCQACYVKNGPENDKCLSCEASKPGAEESGGGGXXXXXXXXXXXXXXXXXXXAGFSFGGPNSSEGEGGPRFGVRTCTPAAAXXXXXXXXXXGGSAVPMGFDMSKFRKPGEWKCQACLVKNGLETSKCLSCETPKSGSTS 528
            L F     +K GEW C  C ++N P   +C++C+   P AE    G                     G       SS     P FG     P               S+ P+GF     +KPG+W C  C V+N      C+SC+TP   S S
Sbjct: 1330 LDFGAVFAKKEGEWDCSVCCIRNTPTAVQCVACQNPNPAAESQPDGRFAATMPAATVPAAGTFTFGFGKEISKDTSSASSTQP-FGSFAQIPTTFKFGTSDA-----SSKPIGFGTQFEKKPGQWDCNTCAVRNEASAGHCVSCQTPNPSSKS 1476          
BLAST of mRNA_C-tenellus_contig10126.2.1 vs. uniprot
Match: A0A060XIH3_ONCMY (Uncharacterized protein n=5 Tax=Oncorhynchus TaxID=8016 RepID=A0A060XIH3_ONCMY)

HSP 1 Score: 63.2 bits (152), Expect = 2.390e-8
Identity = 43/152 (28.29%), Postives = 63/152 (41.45%), Query Frame = 1
Query:   94 RKPGEWKCQACYVKNGPENDKCLSCEASKPGAEESGGGGXXXXXXXXXXXXXXXXXXXAGFSFG-GPNSSE-----GEGGPRFGVRTCTPAAAXXXXXXXXXXGGSA-----VPMGFDMSKFRKPGEWKCQACLVKNGLETSKCLSCETPKS 516
            +K GEW C  C V+N  +  +C++C+ + P A                           GF+FG G +SS+     G  G  FG       ++          G  A     +  GF     +KPG+W+C  CLV+N    S C+SC+TP S
Sbjct: 1346 KKYGEWDCDVCCVRNAAKVMQCVACQTANPNAPSK----LDSAPATDIKGFTSGAASVGGFTFGFGADSSKDTSSAGSIGKGFGSFGAQIPSSFTFGTRKPAVGAPALATLSIGSGFGAQFGKKPGQWECDTCLVRNEESASSCVSCQTPNS 1493          
BLAST of mRNA_C-tenellus_contig10126.2.1 vs. uniprot
Match: A0A673XRX8_SALTR (E3 SUMO-protein ligase RanBP2-like n=1 Tax=Salmo trutta TaxID=8032 RepID=A0A673XRX8_SALTR)

HSP 1 Score: 62.4 bits (150), Expect = 4.400e-8
Identity = 51/178 (28.65%), Postives = 68/178 (38.20%), Query Frame = 1
Query:   43 PAAG-------SGGSPLGFDMSKFRKPGEWKCQACYVKNGPENDKCLSCEASKPGAEESGGGGXXXXXXXXXXXXXXXXXXXAGFSFGGPNSSEGEGGPRFGVRTC------TPAAAXXXXXXXXXXGGSAVPMGFDMSKFRKPGEWKCQACLVKNGLETSKCLSCETPKSGSTSGVA 537
            PAAG       S GS  G   SK  KPG+W C  C V+N    + CLSC+   P  + + GG                     G  FG   + + E   R    T       TP                +   GF     +K G+W C  C+V+N   +S C+SC+TP   + S VA
Sbjct: 1410 PAAGGPALATLSNGSGFGAQFSK--KPGQWDCDTCAVRNEASANSCLSCQTPNPSGKAAAGG---------PALATLSTRSGFGAQFG-KKTGQWECDVRNDESTSSCVSCQTPNPPSTMPFGAPASATLSTGSGFGAQFSKKLGQWDCDTCVVRNEASSSSCVSCQTPNPSAKSTVA 1575          
BLAST of mRNA_C-tenellus_contig10126.2.1 vs. uniprot
Match: A0A7K4QR59_9TYRA (NU153 protein (Fragment) n=1 Tax=Neopipo cinnamomea TaxID=456388 RepID=A0A7K4QR59_9TYRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.720e-8
Identity = 56/178 (31.46%), Postives = 76/178 (42.70%), Query Frame = 1
Query:   43 PAAGSGGSPLGFDMSKFRKPGEWKCQACYVKNGPENDKCLSCEASKPGAEESGGGGXXXXXXXXXXXXXXXXXXXAGFSFG-GPNSSEGEGGPRFGVRTC---TPAAAXXXXXXXXXXGGSAVPM-------------GF-DMSKFRKP-GEWKCQACLVKNGLETSKCLSCETPKSG 519
            PAAG+    LGF+      P  W C  C V N PE  KC++CE  KPG                     XXXXX    + G G    + +G   +    C     A             G +VP+             GF D+ KF++P G W+C+ CLV+N  E +KC++CE+ KSG
Sbjct:  666 PAAGT----LGFEDKFKPAPNTWDCDTCLVHNKPEATKCIACETPKPGTGVMPALTMPVVTDNSVTVTSXXXXXGTTVTLGFGDKFKQPKGS--WNCSMCLLPNKAEDSKCVACQSEKAGFSVPVTSSSVSAFSASSGGFLDLDKFKRPEGSWECEVCLVQNKAEATKCIACESAKSG 837          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10126.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVB0_ECTSI4.840e-2352.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7J5_9PHAE2.790e-1751.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0018ED945A3.830e-927.56ranBP2-like and GRIP domain-containing protein 3 i... [more]
A0A210QD00_MIZYE5.170e-930.50RANBP2-like and GRIP domain-containing protein 8 n... [more]
A0A673XYI3_SALTR5.170e-928.08E3 SUMO-protein ligase RanBP2-like n=1 Tax=Salmo t... [more]
A0A7L1RQL7_9PASS9.150e-931.87NU153 protein (Fragment) n=1 Tax=Locustella ochote... [more]
UPI0015AB4EAB9.600e-927.45E3 SUMO-protein ligase RanBP2 isoform X2 n=1 Tax=A... [more]
A0A060XIH3_ONCMY2.390e-828.29Uncharacterized protein n=5 Tax=Oncorhynchus TaxID... [more]
A0A673XRX8_SALTR4.400e-828.65E3 SUMO-protein ligase RanBP2-like n=1 Tax=Salmo t... [more]
A0A7K4QR59_9TYRA5.720e-831.46NU153 protein (Fragment) n=1 Tax=Neopipo cinnamome... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10126contigC-tenellus_contig10126:2106..2642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FVB0
PFAMsNUP50,Ran_BP1
Model size537
Max annot lvl2759|Eukaryota
KEGG koko:K15304,ko:K17302,ko:K20282
KEGG Pathwayko05166,map05166
Hectar predicted targeting categoryother localisation
GOsGO:0000054,GO:0000056,GO:0000082,GO:0000226,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006403,GO:0006405,GO:0006508,GO:0006511,GO:0006606,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0008104,GO:0008150,GO:0008152,GO:0008536,GO:0009056,GO:0009057,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0017016,GO:0017038,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0022402,GO:0022613,GO:0030163,GO:0031267,GO:0031323,GO:0031326,GO:0031503,GO:0031935,GO:0031938,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0033750,GO:0034504,GO:0034613,GO:0042254,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051020,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060968,GO:0065007,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:1901564,GO:1901565,GO:1901575,GO:1902275,GO:1903047,GO:1903506,GO:2000112,GO:2001141
Exons1
Evalue7.94e-24
EggNOG OGsCOG5171@1|root,KOG0864@2759|Eukaryota
DescriptionRan GTPase binding
Cds size537
COG categoryU
BRITEko00000,ko00001,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789116.260927-CDS-C-tenellus_contig10126:2105..26421680789116.260927-CDS-C-tenellus_contig10126:2105..2642Choristocarpus tenellus KU2346CDSC-tenellus_contig10126 2106..2642 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10126.2.1prot_C-tenellus_contig10126.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10126 2106..2642 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10126.2.1

>prot_C-tenellus_contig10126.2.1 ID=prot_C-tenellus_contig10126.2.1|Name=mRNA_C-tenellus_contig10126.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=179bp
SGSGLGFNASHNTSPAAGSGGSPLGFDMSKFRKPGEWKCQACYVKNGPEN
DKCLSCEASKPGAEESGGGGSGTNSFPSNSFPSSGFISSAGFSFGGPNSS
EGEGGPRFGVRTCTPAAAPAPAPAPAPAGGSAVPMGFDMSKFRKPGEWKC
QACLVKNGLETSKCLSCETPKSGSTSGVA
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mRNA from alignment at C-tenellus_contig10126:2106..2642-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10126.2.1 ID=mRNA_C-tenellus_contig10126.2.1|Name=mRNA_C-tenellus_contig10126.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=537bp|location=Sequence derived from alignment at C-tenellus_contig10126:2106..2642- (Choristocarpus tenellus KU2346)
TCAGGGTCAGGGTTAGGGTTTAATGCATCCCACAATACTAGTCCTGCCGC TGGTTCGGGAGGATCGCCCCTTGGCTTTGATATGTCCAAGTTCCGCAAGC CTGGGGAATGGAAGTGTCAGGCATGTTACGTCAAGAATGGACCAGAGAAC GATAAGTGCTTGTCATGTGAAGCATCTAAGCCTGGAGCAGAAGAATCTGG TGGTGGTGGCAGTGGTACCAACAGTTTCCCTTCCAACAGTTTCCCTTCTT CAGGCTTTATTTCCTCGGCTGGATTCAGCTTTGGTGGCCCCAACAGCAGT GAGGGTGAAGGAGGACCCAGATTTGGTGTGCGAACCTGTACTCCTGCTGC TGCCCCTGCCCCTGCCCCAGCTCCTGCTCCTGCAGGGGGTTCTGCAGTCC CTATGGGTTTCGATATGTCCAAGTTCCGTAAGCCCGGGGAATGGAAATGC CAGGCGTGCCTTGTCAAGAACGGACTAGAGACTTCAAAATGCCTGTCATG TGAAACACCCAAGTCAGGTTCCACTTCTGGGGTTGCA
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Coding sequence (CDS) from alignment at C-tenellus_contig10126:2106..2642-

>mRNA_C-tenellus_contig10126.2.1 ID=mRNA_C-tenellus_contig10126.2.1|Name=mRNA_C-tenellus_contig10126.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=537bp|location=Sequence derived from alignment at C-tenellus_contig10126:2106..2642- (Choristocarpus tenellus KU2346)
TCAGGGTCAGGGTTAGGGTTTAATGCATCCCACAATACTAGTCCTGCCGC
TGGTTCGGGAGGATCGCCCCTTGGCTTTGATATGTCCAAGTTCCGCAAGC
CTGGGGAATGGAAGTGTCAGGCATGTTACGTCAAGAATGGACCAGAGAAC
GATAAGTGCTTGTCATGTGAAGCATCTAAGCCTGGAGCAGAAGAATCTGG
TGGTGGTGGCAGTGGTACCAACAGTTTCCCTTCCAACAGTTTCCCTTCTT
CAGGCTTTATTTCCTCGGCTGGATTCAGCTTTGGTGGCCCCAACAGCAGT
GAGGGTGAAGGAGGACCCAGATTTGGTGTGCGAACCTGTACTCCTGCTGC
TGCCCCTGCCCCTGCCCCAGCTCCTGCTCCTGCAGGGGGTTCTGCAGTCC
CTATGGGTTTCGATATGTCCAAGTTCCGTAAGCCCGGGGAATGGAAATGC
CAGGCGTGCCTTGTCAAGAACGGACTAGAGACTTCAAAATGCCTGTCATG
TGAAACACCCAAGTCAGGTTCCACTTCTGGGGTTGCA
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