prot_C-tenellus_contig975.1.10 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig975.1.10
Unique Nameprot_C-tenellus_contig975.1.10
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length321
Homology
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BLAST of mRNA_C-tenellus_contig975.1.10 vs. uniprot
Match: D7FS80_ECTSI (B1358B12.18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS80_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 5.080e-35
Identity = 151/198 (76.26%), Postives = 174/198 (87.88%), Query Frame = 0 
Query:  116 KSLLGQMLKAAGQRQHWREAITLFDQMKAEGINPGKAAYTAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTVGDLNAILSVAERIRTQNLRPDHNAYHLMVTSHIGKLDWVGATKTLVDMSKDGLAPSSMSVRQWRLASAAIEEIDLDVNE 313
            K L+ QM+KAAGQRQHW+EAI LFDQM+ +G+   KAAY AAL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VGD++AIL++ E++R Q+L PDH  YHL+VTSHI KLDWV AT+ LV+M + GLAP++ S R+WRLA+A IEEID++VNE
Sbjct:   90 KRLMAQMVKAAGQRQHWKEAIVLFDQMQEKGVPTVKAAYGAALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGDMDAILAIGEQLRAQSLTPDHAGYHLIVTSHISKLDWVSATEALVEMGEAGLAPTAGSARKWRLANAVIEEIDIEVNE 287
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig975.1.10 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS80_ECTSI5.080e-3576.26B1358B12.18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 116..311
e-value: 5.4E-32
score: 113.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 153..186
e-value: 5.6E-4
score: 17.9
coord: 122..149
e-value: 2.4E-4
score: 19.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 150..184
score: 8.846
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 255..289
score: 6.741
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 185..219
score: 8.122
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 220..254
score: 7.618
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 115..149
score: 8.32
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 116..269
e-value: 5.5E-7
score: 29.1
NoneNo IPR availablePANTHERPTHR47933PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIALcoord: 123..291

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig975contigC-tenellus_contig975:800..4518 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig975.1.10mRNA_C-tenellus_contig975.1.10Choristocarpus tenellus KU2346mRNAC-tenellus_contig975 633..5364 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig975.1.10 ID=prot_C-tenellus_contig975.1.10|Name=mRNA_C-tenellus_contig975.1.10|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=321bp
MTPTAASTMCMVGIVAFSNTCAGLTFTATPHSWSGGQCFPPDRRRDVGLD
PVTTQSGTAMGGVFRGKYRGQAGTGRRRRRLSNGGDWAVLWGARRGGASD
EGEADIANMLKETGMKSLLGQMLKAAGQRQHWREAITLFDQMKAEGINPG
KAAYTAALKACCKGAEWKRAVELFNSCIEDGFELDELMVSSAVKACCRAG
RPLEAEALLVKGLSMGVEVEVGVYTAVMNACYTVGDLNAILSVAERIRTQ
NLRPDHNAYHLMVTSHIGKLDWVGATKTLVDMSKDGLAPSSMSVRQWRLA
SAAIEEIDLDVNEYDYDFES*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long