mRNA_C-tenellus_contig975.1.10 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig975.1.10
Unique NamemRNA_C-tenellus_contig975.1.10
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig975.1.10 vs. uniprot
Match: D7FS80_ECTSI (B1358B12.18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS80_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 9.090e-33
Identity = 151/198 (76.26%), Postives = 174/198 (87.88%), Query Frame = 3 
Query:  513 KSLLGQMLKAAGQRQHWREAITLFDQMKAEGINPGKAAYTAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTVGDLNAILSVAERIRTQNLRPDHNAYHLMVTSHIGKLDWVGATKTLVDMSKDGLAPSSMSVRQWRLASAAIEEIDLDVNE 1106
            K L+ QM+KAAGQRQHW+EAI LFDQM+ +G+   KAAY AAL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VGD++AIL++ E++R Q+L PDH  YHL+VTSHI KLDWV AT+ LV+M + GLAP++ S R+WRLA+A IEEID++VNE
Sbjct:   90 KRLMAQMVKAAGQRQHWKEAIVLFDQMQEKGVPTVKAAYGAALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGDMDAILAIGEQLRAQSLTPDHAGYHLIVTSHISKLDWVSATEALVEMGEAGLAPTAGSARKWRLANAVIEEIDIEVNE 287
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig975.1.10 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS80_ECTSI9.090e-3376.26B1358B12.18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig975contigC-tenellus_contig975:633..5364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FS80
PFAMsPPR,PPR_2
Model size1976
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons7
Evalue8.33e-36
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Ec32 ortholog descriptionB1358B12.18
Ec32 orthologEc-01_000870.1
Descriptionendonuclease activity
Cds size963
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig975.1.10prot_C-tenellus_contig975.1.10Choristocarpus tenellus KU2346polypeptideC-tenellus_contig975 800..4518 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790198.8180277-UTR-C-tenellus_contig975:632..7991680790198.8180277-UTR-C-tenellus_contig975:632..799Choristocarpus tenellus KU2346UTRC-tenellus_contig975 633..799 +
1680790198.926589-UTR-C-tenellus_contig975:4518..53641680790198.926589-UTR-C-tenellus_contig975:4518..5364Choristocarpus tenellus KU2346UTRC-tenellus_contig975 4519..5364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790198.8358188-CDS-C-tenellus_contig975:799..9021680790198.8358188-CDS-C-tenellus_contig975:799..902Choristocarpus tenellus KU2346CDSC-tenellus_contig975 800..902 +
1680790198.8458946-CDS-C-tenellus_contig975:1114..13151680790198.8458946-CDS-C-tenellus_contig975:1114..1315Choristocarpus tenellus KU2346CDSC-tenellus_contig975 1115..1315 +
1680790198.8577971-CDS-C-tenellus_contig975:1484..16151680790198.8577971-CDS-C-tenellus_contig975:1484..1615Choristocarpus tenellus KU2346CDSC-tenellus_contig975 1485..1615 +
1680790198.868992-CDS-C-tenellus_contig975:2278..23801680790198.868992-CDS-C-tenellus_contig975:2278..2380Choristocarpus tenellus KU2346CDSC-tenellus_contig975 2279..2380 +
1680790198.879985-CDS-C-tenellus_contig975:3108..32311680790198.879985-CDS-C-tenellus_contig975:3108..3231Choristocarpus tenellus KU2346CDSC-tenellus_contig975 3109..3231 +
1680790198.895828-CDS-C-tenellus_contig975:3575..37251680790198.895828-CDS-C-tenellus_contig975:3575..3725Choristocarpus tenellus KU2346CDSC-tenellus_contig975 3576..3725 +
1680790198.9118156-CDS-C-tenellus_contig975:4365..45181680790198.9118156-CDS-C-tenellus_contig975:4365..4518Choristocarpus tenellus KU2346CDSC-tenellus_contig975 4366..4518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig975.1.10

>prot_C-tenellus_contig975.1.10 ID=prot_C-tenellus_contig975.1.10|Name=mRNA_C-tenellus_contig975.1.10|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=321bp
MTPTAASTMCMVGIVAFSNTCAGLTFTATPHSWSGGQCFPPDRRRDVGLD
PVTTQSGTAMGGVFRGKYRGQAGTGRRRRRLSNGGDWAVLWGARRGGASD
EGEADIANMLKETGMKSLLGQMLKAAGQRQHWREAITLFDQMKAEGINPG
KAAYTAALKACCKGAEWKRAVELFNSCIEDGFELDELMVSSAVKACCRAG
RPLEAEALLVKGLSMGVEVEVGVYTAVMNACYTVGDLNAILSVAERIRTQ
NLRPDHNAYHLMVTSHIGKLDWVGATKTLVDMSKDGLAPSSMSVRQWRLA
SAAIEEIDLDVNEYDYDFES*
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mRNA from alignment at C-tenellus_contig975:633..5364+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig975.1.10 ID=mRNA_C-tenellus_contig975.1.10|Name=mRNA_C-tenellus_contig975.1.10|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4732bp|location=Sequence derived from alignment at C-tenellus_contig975:633..5364+ (Choristocarpus tenellus KU2346)
CAAACAAGGAGTAAGGGGTGAATCATTCACTCTGTAACTTAACATCTTGG
TCCCTTGTGCGTTCAACACCAGGCGGCCTAGCCTCTTGTACTCCTTAAGC
GTGGTGCAAGGGTCTAGAGAGGTGTAAACGTGTTGGTGGGAGAGACTGGG
TCGACATTTTGGGAATCATGACACCAACAGCAGCGAGTACGATGTGCATG
GTTGGCATCGTAGCCTTTTCCAACACCTGTGCTGGATTGACTTTCACCGC
GACCCCCCACTCATGGTCTGGTGAGGGTAGACTGAAATAAGGATGAAATT
TGCGGAAAAATAGGAATATGGACCATGGGTGATTTGTTTGTCTTGATGTG
TTGTGCTTGAGAGAGACGTGTCGTATTGGCTTCACAATACCGACATCTCG
TTAAGGACCAGCACTCTCTGAATTTCTTCGATAAAACAATCCTTTAGACC
TTCAGAACAAGCCCAACTGTGGCCCATGACAGGGGGGCAGTGCTTTCCAC
CAGACCGTCGACGAGATGTTGGCCTTGATCCTGTTACTACACAATCAGGA
ACAGCAATGGGGGGTGTATTTAGGGGGAAGTATCGAGGGCAGGCTGGAAC
TGGGCGGCGTCGAAGACGATTATCTAATGGAGGAGACTGGGCTGTGCTTT
GGGGAGCAAGGAGAGGAGGCGCCAGTGATGAAGGTAAAGGTGTCTGGTCC
CCCTTCAAACATTTGACAAAGAAAATGGTTGAGGTCTTGGTGACTCTGAC
TGTGTAGTGCCTGGATTCTAGGCCCCTGAGAACAGTTTGATTTGTAGCAC
CCAGTGGATATAGGAGCAGAGCGTTCCTCATAACCCTGTTACGTCTGCGT
AGGTGAAGCAGATATTGCAAACATGTTGAAGGAGACTGGGATGAAAAGCC
TTTTGGGACAAATGCTCAAAGCTGCCGGGCAGCGCCAGCACTGGAGGGAA
GCTATCACCTTGTTTGACCAGATGAAAGCTGAGGTATGCGTAGTGCAGCA
CAACGCCCATAAAAAACAAGGGTTCACTTCTGCCTAGTCCGACCATGACA
GTAAATACCTTGAGTTGTCGACATGATAGGCTCCCAGTTTCCGATCCAAG
CAAGTTTTTCCTGTGTACATTGGTTATTGGAATTTTCGGCTCCTTTCTTC
ATCTTGAACGCAATTTTTTTGGTCAGTAGTTTGATTAGCTTCAAATGTTG
CTTTTGGCCAGTCTTCCCTTTGGGCCTGGTGTTACCCCCGTACTTTGCTT
GGCCCTCTTGAAAATGCTTCATCCATTAGAGGTAGAATCCTACCTCTCCA
TCACCACACATGACATTTATCTTCTCCCATTCCTGTTTCCTAGGCTCTCT
TCATTTGCAAAGAATAGTGTATATTGTTCCTGCTCTTGTTACACCCCAAA
ACAGAACTCAACAGATTGATCGTCCAATGTGTTGTGGGAGGACACTCAAG
TGCTTCATTCATGGGGGGTAGAATCCTACCTCCTCATGACCACACTTGAC
CTATTTCTTCTCCCATTATCTTTTGCCTAGGCTCTCTTCACTTGCAAAGA
ACAATGTCTGTTGCTGCTGCTCTTACCGCGTCCAAATCCATTATTGACAA
ATTGTCTGTCAAATGTGATGTCGGGGGGCACCGGGTTGGCAATTAGGGTA
TCAATCCTGGAAAGGCAGCCTATACAGCTGCACTGAAAGCTTGTTGCAAG
GGGGCCGAATGGAAGCGGGCTGTTGAACTATTCAACAGTTGCATTGAGGT
GTGTGGAGGTCGAGCTACAGTAGGCGGTGGATATGATGTTGGGGTCTGAG
GATGGGGTAAGGCCTGAGGGTGTGGTTTGTGGAGTAGAGAAATTGATAAG
TTTGTATTAATGCTATTTTTTTTTTTTTCACTCTTCATGACCGAGGAAAA
ACGGCTACATAGTCGAAGGTGAGAAGAAAAGCTTCTATCTTCATCCTTGG
GCAGTATTATTTGTCTTACTTTCGAAGATTTCTCATACTAGGCAAATGGG
GATCCTTGGTGGGATCTTCCCCACAACAGCTTGGCCGCGTCATTCAGGGT
GAAACCATGGAATTTTTTGTTGCAAATCTTCAAAGCTGCCACTGGTACAT
GGATAGTGTTGTGGAGGAGGGATTGTGCTTCAAGGTTATCCACTGGTGTA
AATGTACTCTTTTGAAGGACCATAGTGTTTTTTTGAGAAATCTATGTGGA
ACCCCAATGATGTATCTCGAAGTGTTGGTACTTGCATTGATAAATCGGCA
TTGTCCATTATGTGGCACGAGGTGGTCCGTTGTTGTGTGAGAAGGCCTTA
CGCATGCAATGCTACTTGGTATCTAGGGTTAGGATTCTAGAGGTCTAGCC
CTCGATTTACCCCTCGCCTACCCATCATACCCCTTCTATGCTCCCAATGA
TAATGCTCTGCCAACAACGGCACCGTTGTCTGTGCCTTGGGTACAAATGT
TGATCTTGATGACCGGTCGCGTATAGGATGGTTTTGAGCTGGATGAGCTT
ATGGTCTCCTCGGCAGTCAAGGCTTGCTGTCGGGCTGGTAGGCCGTTGGA
GGCAGAAGCCCTTCTGGTGAAGGGCTTGTCCATGGGGGTAGAGGTTGAGG
TGAGATGTACCATCAGTAATTGCAGAGTACCCTTGCTGGTACACTATTCC
GTGGTTGAGTTGGTCGGGATGTACTGTCAGTTCTCTGGTATAGTACTTCC
CAGCAACCAGTGTGCATTCTCTTTCCTCTTCCTGTGATGTTTATGAACTA
ATTGCTCTAGTTGTCCCTGCAATCCTTTCGTTCAAGGGTGCAACCACATG
CGATCAATCCACCAGCTCCTACTCCTGCTTGTCCGTTGACTCCCCAGCAA
GTCATGACCTGGTGTGCACCCCCGCATACTTAGTACGACCCCCTCATTGC
TCTCTCGCCCTTCTGTTCTTCCTTTGCCTCATCGGAACATTAGGTTGGAG
TGTATACAGCAGTCATGAATGCCTGCTACACGGTGGGGGATTTGAATGCC
ATCTTGAGTGTGGCTGAGAGGATAAGAACACAGAACCTTCGCCCGGACCA
CAACGCCTATCACCTCATGGTTACATCGCATATAGGCAAACTGGTGAGAC
TATTTGTTTTTACCAGGAGTGGGTGCAGATGAGAGTACTAGAGGCAGAGA
AGGGGCAGTGTTTGGGGACTGCTGACTATCAGAGATGTCAGATGTCAACA
ACTTGGTTTGCTTGCAAGCTTTAGCTTTGCCTACTGTTGTTGTCTGTTTA
TATCAGGGCACGATGTCCGAGTACTGGGATACTGATACTGTTTATATAGA
TCATGTGGAATTTTGTTCCTTGCAGACAAGGTCAACCCCCATGCCTTGTC
TGCCAGGCAAAATCATGAAAGCAAAAAGCCTGTCAAGCCGACACCTGACG
TGTTTGCTAGCAGCAGATGCATCTCGAGGGTGGGGGGTGTCTAAAGAGTG
ATGCGGGGAGGTGATTATGGTTGATAGATAGGAGTATGACTAATTGTTTC
TGATTCGGCAATGTCTTGCCTGTGCAGAGATTGTCTCTCACTTTTGTCCA
CACAAGGTAAACATGGGCCCTCACTCACGCAAAACTCGAATTGCTAAGGG
TTGGTGCCTATCACTATGTTTCAAACAAGTAAATCTCTTCATTACAAGCG
AACAAAGGGAGCTTTGCGTTCCCTCCAAGCAAATGGGACACACCCGATGA
GTTCTTGTCCCATCCCCTTGCGTGCCTCCGCAGGACTGGGTGGGTGCCAC
TAAAACTTTGGTGGATATGAGCAAGGATGGCTTGGCTCCTAGTAGCATGT
CGGTGCGGCAGTGGCGTCTGGCCTCTGCTGCCATTGAGGAAATTGACCTG
GATGTGAATGAGTATGATTACGATTTTGAGTCTTAGTCAGACGAAGATGG
TGGAGGTTGGGAATAGAAGGCTTTTCGACAATGGGCAGGGAGGAGGTTGG
AGGAATCAATAAGGATGATCCCCTCTTTGTAAAAATCCTAGTTCGTTGTG
CATGTGTGAGAAGATTCTATGCAACGTGTTTGTTGAGTAGATTGAGAATG
TGAAGCACTTTCAAAAATACCCGTCTGGCATATGAACTCTTTTTCTTCAA
CCATGTGTGGGATTTAAAAAAGAGAGTCTGTGCCGAGTTGATTGGCGTGC
TCTGCTGCAATCTTTTTATGGGTGGGCGTTCACGGTCACTGTCCAATCAT
CTACACCCCAGCCGTTAAAGACATGTTAGTTGCCGTTTTGGTCTCCTCCA
ATGTGTGTGAGGATCTCCTCTGCATGCTTACAATAACAATAGAAATGTGA
TTGGAAACCGTGTGAGATGATTGGTATATGCTGTGGATGGTCTGCGCTCA
ACCTCTTTTGGTATGGACTCAAGTCACACTTTGGCATATGCGCAATATTA
GTGGTTGGCTTTGTAGTTATTTTCCGAGATCTATAGATTTTTGGTTACTT
CTGTATTTTTGTATATTTATTTATCTCATGGTTGGGAAGGGGGTGGGATC
AGCAGGCATACTGTAAGGTTTATATGAATTTGGCGATAACCACTGATATG
GGAAGTATTACGGCTGGTTTATTTGATATGGTGTGTACCCTATCAATGTG
TGAGATGATAGTATTAGAGGGTATTTTTTTGGTAGTACGGATAAAAGTTT
ATCATGACCCCTTAAATAGGTAGGGTAAAATCAAAATACTGTTCATGAAA
GGAGTACAAACTCCAACATCCTCATTCTTAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig975:633..5364+

>mRNA_C-tenellus_contig975.1.10 ID=mRNA_C-tenellus_contig975.1.10|Name=mRNA_C-tenellus_contig975.1.10|organism=Choristocarpus tenellus KU2346|type=CDS|length=963bp|location=Sequence derived from alignment at C-tenellus_contig975:633..5364+ (Choristocarpus tenellus KU2346)
ATGACACCAACAGCAGCGAGTACGATGTGCATGGTTGGCATCGTAGCCTT
TTCCAACACCTGTGCTGGATTGACTTTCACCGCGACCCCCCACTCATGGT
CTGGGGGGCAGTGCTTTCCACCAGACCGTCGACGAGATGTTGGCCTTGAT
CCTGTTACTACACAATCAGGAACAGCAATGGGGGGTGTATTTAGGGGGAA
GTATCGAGGGCAGGCTGGAACTGGGCGGCGTCGAAGACGATTATCTAATG
GAGGAGACTGGGCTGTGCTTTGGGGAGCAAGGAGAGGAGGCGCCAGTGAT
GAAGGTGAAGCAGATATTGCAAACATGTTGAAGGAGACTGGGATGAAAAG
CCTTTTGGGACAAATGCTCAAAGCTGCCGGGCAGCGCCAGCACTGGAGGG
AAGCTATCACCTTGTTTGACCAGATGAAAGCTGAGGGTATCAATCCTGGA
AAGGCAGCCTATACAGCTGCACTGAAAGCTTGTTGCAAGGGGGCCGAATG
GAAGCGGGCTGTTGAACTATTCAACAGTTGCATTGAGGATGGTTTTGAGC
TGGATGAGCTTATGGTCTCCTCGGCAGTCAAGGCTTGCTGTCGGGCTGGT
AGGCCGTTGGAGGCAGAAGCCCTTCTGGTGAAGGGCTTGTCCATGGGGGT
AGAGGTTGAGGTTGGAGTGTATACAGCAGTCATGAATGCCTGCTACACGG
TGGGGGATTTGAATGCCATCTTGAGTGTGGCTGAGAGGATAAGAACACAG
AACCTTCGCCCGGACCACAACGCCTATCACCTCATGGTTACATCGCATAT
AGGCAAACTGGACTGGGTGGGTGCCACTAAAACTTTGGTGGATATGAGCA
AGGATGGCTTGGCTCCTAGTAGCATGTCGGTGCGGCAGTGGCGTCTGGCC
TCTGCTGCCATTGAGGAAATTGACCTGGATGTGAATGAGTATGATTACGA
TTTTGAGTCTTAG
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