prot_C-tenellus_contig9725.3.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-tenellus_contig9725.3.1
Unique Name	prot_C-tenellus_contig9725.3.1
Type	polypeptide
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length	122

Homology

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BLAST of mRNA_C-tenellus_contig9725.3.1 vs. uniprot
Match: D8LQA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA9_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.960e-13
Identity = 47/122 (38.52%), Postives = 64/122 (52.46%), Query Frame = 0

Query:    1 MNPLLPSEVNVGLLPRQNAVWGWELFRFSKTQGVSVVRRLHSIAQIINAATWIFILIAVFVNEDAGLTIVALIGLPIVWIIYALLIRAVCELAVSVMLIPALLANQLHQGAREGMRPPVSGG 122
            +NP+LP EV V  +P+Q      ELF F   QG+ + RRLH + Q+ N      +L  +     A   IVA+I  PI     A  +R + ELAVSV+L+P+LLA     G R  +  PV  G
Sbjct:    2 LNPMLPDEVAVKQVPKQRFSGVKELFVFRHFQGIVLARRLHFVGQVWNVVWSTLVLFGILREGTALGIIVAIIVYPIFVFYMACFLRLMSELAVSVLLLPSLLAKSQGNGGRGAVAEPVGVG 123

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig9725.3.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig9725.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LQA9_ECTSI	3.960e-13	38.52	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 67..90
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 91..122
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..39
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 40..61
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 62..66

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig9725	contig	C-tenellus_contig9725:2627..3203 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig9725.3.1	mRNA_C-tenellus_contig9725.3.1	Choristocarpus tenellus KU2346	mRNA	C-tenellus_contig9725 2627..3203 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-tenellus_contig9725.3.1 ID=prot_C-tenellus_contig9725.3.1|Name=mRNA_C-tenellus_contig9725.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=122bp
MNPLLPSEVNVGLLPRQNAVWGWELFRFSKTQGVSVVRRLHSIAQIINAA
TWIFILIAVFVNEDAGLTIVALIGLPIVWIIYALLIRAVCELAVSVMLIP
ALLANQLHQGAREGMRPPVSGG