mRNA_C-tenellus_contig9725.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9725.3.1
Unique NamemRNA_C-tenellus_contig9725.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9725.3.1 vs. uniprot
Match: D8LQA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA9_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.960e-13
Identity = 47/122 (38.52%), Postives = 64/122 (52.46%), Query Frame = 1 
Query:    1 MNPLLPSEVNVGLLPRQNAVWGWELFRFSKTQGVSVVRRLHSIAQIINAATWIFILIAVFVNEDAGLTIVALIGLPIVWIIYALLIRAVCELAVSVMLIPALLANQLHQGAREGMRPPVSGG 366
            +NP+LP EV V  +P+Q      ELF F   QG+ + RRLH + Q+ N      +L  +     A   IVA+I  PI     A  +R + ELAVSV+L+P+LLA     G R  +  PV  G
Sbjct:    2 LNPMLPDEVAVKQVPKQRFSGVKELFVFRHFQGIVLARRLHFVGQVWNVVWSTLVLFGILREGTALGIIVAIIVYPIFVFYMACFLRLMSELAVSVLLLPSLLAKSQGNGGRGAVAEPVGVG 123
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9725.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQA9_ECTSI3.960e-1338.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9725contigC-tenellus_contig9725:2627..3203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size366
Hectar predicted targeting categorysignal anchor
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_005480.1
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790198.2342575-CDS-C-tenellus_contig9725:2626..27161680790198.2342575-CDS-C-tenellus_contig9725:2626..2716Choristocarpus tenellus KU2346CDSC-tenellus_contig9725 2627..2716 +
1680790198.2449253-CDS-C-tenellus_contig9725:2927..32031680790198.2449253-CDS-C-tenellus_contig9725:2927..3203Choristocarpus tenellus KU2346CDSC-tenellus_contig9725 2928..3203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9725.3.1prot_C-tenellus_contig9725.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9725 2627..3203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9725.3.1

>prot_C-tenellus_contig9725.3.1 ID=prot_C-tenellus_contig9725.3.1|Name=mRNA_C-tenellus_contig9725.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=122bp
MNPLLPSEVNVGLLPRQNAVWGWELFRFSKTQGVSVVRRLHSIAQIINAA
TWIFILIAVFVNEDAGLTIVALIGLPIVWIIYALLIRAVCELAVSVMLIP
ALLANQLHQGAREGMRPPVSGG
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mRNA from alignment at C-tenellus_contig9725:2627..3203+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9725.3.1 ID=mRNA_C-tenellus_contig9725.3.1|Name=mRNA_C-tenellus_contig9725.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=577bp|location=Sequence derived from alignment at C-tenellus_contig9725:2627..3203+ (Choristocarpus tenellus KU2346)
ATGAATCCTCTCCTGCCGAGCGAGGTGAACGTCGGGTTGCTCCCAAGGCA
GAATGCGGTGTGGGGTTGGGAGCTCTTTCGTTTTTCGAAGGTAAGGGAGA
AAAACAAGGTTGCCTAGAGTTTTGCACCCGTCGAAATTGGTATTCAAACA
AATCATTTACATACCTGTCCACCTTCATTCAACACCTGCTTCCAAATGCT
CTTATCAGACCTTTGAATTTACCTTAACAATTCCGGATAAATACTTACTT
CGTCGTCTGATCCATGAATCCCTCTGCTCCTGGAACTCACCCCACAAGTA
GACGCAAGGTGTGTCCGTAGTCCGGAGACTCCATAGCATTGCGCAGATTA
TCAACGCGGCGACCTGGATATTCATCCTCATTGCAGTTTTTGTTAATGAA
GATGCTGGTCTTACCATCGTTGCACTTATTGGTCTCCCAATTGTCTGGAT
CATATATGCACTTCTGATTCGGGCAGTGTGCGAGTTAGCTGTATCCGTGA
TGCTCATTCCTGCTTTGTTGGCAAACCAACTGCACCAAGGAGCCCGTGAG
GGTATGCGGCCCCCTGTATCTGGTGGA
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Coding sequence (CDS) from alignment at C-tenellus_contig9725:2627..3203+

>mRNA_C-tenellus_contig9725.3.1 ID=mRNA_C-tenellus_contig9725.3.1|Name=mRNA_C-tenellus_contig9725.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=366bp|location=Sequence derived from alignment at C-tenellus_contig9725:2627..3203+ (Choristocarpus tenellus KU2346)
ATGAATCCTCTCCTGCCGAGCGAGGTGAACGTCGGGTTGCTCCCAAGGCA
GAATGCGGTGTGGGGTTGGGAGCTCTTTCGTTTTTCGAAGACGCAAGGTG
TGTCCGTAGTCCGGAGACTCCATAGCATTGCGCAGATTATCAACGCGGCG
ACCTGGATATTCATCCTCATTGCAGTTTTTGTTAATGAAGATGCTGGTCT
TACCATCGTTGCACTTATTGGTCTCCCAATTGTCTGGATCATATATGCAC
TTCTGATTCGGGCAGTGTGCGAGTTAGCTGTATCCGTGATGCTCATTCCT
GCTTTGTTGGCAAACCAACTGCACCAAGGAGCCCGTGAGGGTATGCGGCC
CCCTGTATCTGGTGGA
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