prot_C-tenellus_contig9698.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-tenellus_contig9698.1.1
Unique Name	prot_C-tenellus_contig9698.1.1
Type	polypeptide
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length	208

Homology

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BLAST of mRNA_C-tenellus_contig9698.1.1 vs. uniprot
Match: D8LTH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH3_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.150e-17
Identity = 71/209 (33.97%), Postives = 105/209 (50.24%), Query Frame = 0

Query:    2 AWATSSCVVIPTSGLIGLPLARAMVSTVCAHIAYSFLKFTIGSVAL-NITTLPHPQSTGSGGTGAGPGTKVGQGPSAVAQRRPLKRFSASKHEHFLVVMKTGSDGCGTPMVARRLGTIPPLWLVIMTMAGGPAVGTLVAIVASR-GHLDDEAARGALFRGVVACTLFAGGLSLGGKGAVFAARWAGLQAAIGMLCARILSPASLLFLYL 208
            AW T+S   +  +G+IG PL+RA+V+T  AH +++ +KF++  +A+ N   +  P           P T         A RR L+  S S          +   G     V R   ++P LWL+ +T AGGPA+G + + VA + G +   AA  +L RG V   L AG L  GG G    ARWA  Q  +G   A +LSP++L+ +YL
Sbjct:    7 AWMTTSLGPVAAAGVIGQPLSRALVATCAAHASFAAIKFSLAILAMSNFPPVYAPPPRRHPNNKPTPPTTPRNXXXXKAPRRKLEFPSLSPRRRGPPAPVSAVPGTRI-QVRRSARSVPKLWLMALTAAGGPAMGAVGSAVAWKAGLVAMPAALSSLSRGSVISALLAGTLCYGGAGTEVVARWAVFQGIMGAPFAALLSPSALMLVYL 214

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig9698.1.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig9698.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LTH3_ECTSI	1.150e-17	33.97	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..77
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 155..174
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..24
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 186..207
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 175..185
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 20..24
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..7
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 25..120
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 208..208
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 121..143
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 144..154
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 8..19

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig9698	contig	C-tenellus_contig9698:306..1019 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig9698.1.1	mRNA_C-tenellus_contig9698.1.1	Choristocarpus tenellus KU2346	mRNA	C-tenellus_contig9698 306..1019 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-tenellus_contig9698.1.1 ID=prot_C-tenellus_contig9698.1.1|Name=mRNA_C-tenellus_contig9698.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=208bp
MAWATSSCVVIPTSGLIGLPLARAMVSTVCAHIAYSFLKFTIGSVALNIT
TLPHPQSTGSGGTGAGPGTKVGQGPSAVAQRRPLKRFSASKHEHFLVVMK
TGSDGCGTPMVARRLGTIPPLWLVIMTMAGGPAVGTLVAIVASRGHLDDE
AARGALFRGVVACTLFAGGLSLGGKGAVFAARWAGLQAAIGMLCARILSP
ASLLFLYL