mRNA_C-tenellus_contig9698.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9698.1.1
Unique NamemRNA_C-tenellus_contig9698.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9698.1.1 vs. uniprot
Match: D8LTH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH3_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.150e-17
Identity = 71/209 (33.97%), Postives = 105/209 (50.24%), Query Frame = 1 
Query:    4 AWATSSCVVIPTSGLIGLPLARAMVSTVCAHIAYSFLKFTIGSVAL-NITTLPHPQSTGSGGTGAGPGTKVGQGPSAVAQRRPLKRFSASKHEHFLVVMKTGSDGCGTPMVARRLGTIPPLWLVIMTMAGGPAVGTLVAIVASR-GHLDDEAARGALFRGVVACTLFAGGLSLGGKGAVFAARWAGLQAAIGMLCARILSPASLLFLYL 624
            AW T+S   +  +G+IG PL+RA+V+T  AH +++ +KF++  +A+ N   +  P           P T         A RR L+  S S          +   G     V R   ++P LWL+ +T AGGPA+G + + VA + G +   AA  +L RG V   L AG L  GG G    ARWA  Q  +G   A +LSP++L+ +YL
Sbjct:    7 AWMTTSLGPVAAAGVIGQPLSRALVATCAAHASFAAIKFSLAILAMSNFPPVYAPPPRRHPNNKPTPPTTPRNXXXXKAPRRKLEFPSLSPRRRGPPAPVSAVPGTRI-QVRRSARSVPKLWLMALTAAGGPAMGAVGSAVAWKAGLVAMPAALSSLSRGSVISALLAGTLCYGGAGTEVVARWAVFQGIMGAPFAALLSPSALMLVYL 214
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9698.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTH3_ECTSI1.150e-1733.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9698contigC-tenellus_contig9698:306..1019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size624
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_005620.1
Cds size624
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790196.4806046-CDS-C-tenellus_contig9698:305..5391680790196.4806046-CDS-C-tenellus_contig9698:305..539Choristocarpus tenellus KU2346CDSC-tenellus_contig9698 306..539 +
1680790196.4904907-CDS-C-tenellus_contig9698:629..10191680790196.4904907-CDS-C-tenellus_contig9698:629..1019Choristocarpus tenellus KU2346CDSC-tenellus_contig9698 630..1019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9698.1.1prot_C-tenellus_contig9698.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9698 306..1019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9698.1.1

>prot_C-tenellus_contig9698.1.1 ID=prot_C-tenellus_contig9698.1.1|Name=mRNA_C-tenellus_contig9698.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=208bp
MAWATSSCVVIPTSGLIGLPLARAMVSTVCAHIAYSFLKFTIGSVALNIT
TLPHPQSTGSGGTGAGPGTKVGQGPSAVAQRRPLKRFSASKHEHFLVVMK
TGSDGCGTPMVARRLGTIPPLWLVIMTMAGGPAVGTLVAIVASRGHLDDE
AARGALFRGVVACTLFAGGLSLGGKGAVFAARWAGLQAAIGMLCARILSP
ASLLFLYL
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mRNA from alignment at C-tenellus_contig9698:306..1019+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9698.1.1 ID=mRNA_C-tenellus_contig9698.1.1|Name=mRNA_C-tenellus_contig9698.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=714bp|location=Sequence derived from alignment at C-tenellus_contig9698:306..1019+ (Choristocarpus tenellus KU2346)
ATGGCCTGGGCCACCTCAAGCTGTGTAGTGATCCCTACCTCAGGGCTCAT
TGGCCTTCCACTAGCCAGGGCCATGGTGTCAACAGTCTGTGCCCACATAG
CCTACTCATTCTTAAAGTTCACCATTGGTAGTGTCGCCTTGAACATCACA
ACTTTGCCACATCCACAGTCCACTGGGTCAGGGGGTACTGGTGCAGGACC
TGGAACAAAGGTAGGACAAGGACCCAGCGCAGTAGTGAAGGCAGCCAGTG
CTGGGTTGGGTTGCAGTGGTAAAAATGTCAGCAGTGGGTTGACGACTTTG
AAGGTGGGAGGGAGGCAGCGGCAGGCACAAAGGCGGCCATTGAAGAGGTT
TTCTGCTTCGAAGCATGAGCATTTCCTTGTAGTAATGAAAACAGGCTCGG
ATGGATGTGGGACACCGATGGTAGCTCGTCGGCTGGGAACAATTCCTCCA
TTGTGGCTTGTGATCATGACCATGGCCGGGGGGCCAGCTGTTGGAACATT
GGTGGCAATTGTGGCTAGCAGGGGACATCTAGATGATGAAGCAGCCCGTG
GGGCACTCTTTAGGGGTGTTGTAGCTTGTACACTGTTTGCAGGGGGGCTA
AGCCTGGGGGGCAAGGGCGCAGTTTTCGCGGCGCGGTGGGCTGGATTACA
GGCTGCTATTGGGATGCTATGTGCACGGATTCTAAGCCCAGCATCTTTGC
TATTCTTGTACCTC
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Coding sequence (CDS) from alignment at C-tenellus_contig9698:306..1019+

>mRNA_C-tenellus_contig9698.1.1 ID=mRNA_C-tenellus_contig9698.1.1|Name=mRNA_C-tenellus_contig9698.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=624bp|location=Sequence derived from alignment at C-tenellus_contig9698:306..1019+ (Choristocarpus tenellus KU2346)
ATGGCCTGGGCCACCTCAAGCTGTGTAGTGATCCCTACCTCAGGGCTCAT
TGGCCTTCCACTAGCCAGGGCCATGGTGTCAACAGTCTGTGCCCACATAG
CCTACTCATTCTTAAAGTTCACCATTGGTAGTGTCGCCTTGAACATCACA
ACTTTGCCACATCCACAGTCCACTGGGTCAGGGGGTACTGGTGCAGGACC
TGGAACAAAGGTAGGACAAGGACCCAGCGCAGTAGCACAAAGGCGGCCAT
TGAAGAGGTTTTCTGCTTCGAAGCATGAGCATTTCCTTGTAGTAATGAAA
ACAGGCTCGGATGGATGTGGGACACCGATGGTAGCTCGTCGGCTGGGAAC
AATTCCTCCATTGTGGCTTGTGATCATGACCATGGCCGGGGGGCCAGCTG
TTGGAACATTGGTGGCAATTGTGGCTAGCAGGGGACATCTAGATGATGAA
GCAGCCCGTGGGGCACTCTTTAGGGGTGTTGTAGCTTGTACACTGTTTGC
AGGGGGGCTAAGCCTGGGGGGCAAGGGCGCAGTTTTCGCGGCGCGGTGGG
CTGGATTACAGGCTGCTATTGGGATGCTATGTGCACGGATTCTAAGCCCA
GCATCTTTGCTATTCTTGTACCTC
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