prot_C-tenellus_contig109.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig109.1.1
Unique Nameprot_C-tenellus_contig109.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length309
Homology
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BLAST of mRNA_C-tenellus_contig109.1.1 vs. uniprot
Match: A0A6H5K2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E6_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 8.820e-5
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = 0 
Query:    1 MTLARILGFLAITLQTLGGFAHDIKGCLTAVEDSNYRCGSATDTILDLSTCGLEDDDMDAIRACIETRGVASITKLYLHKNKLRNLKEGLFLGM 94
            MTL  +LG L+  L T   FA ++  CL + +    +  +  + IL L  CG  D D D + +C+E  G  +IT LYL++N+L  L EG+F G+
Sbjct:    4 MTLIILLG-LSTLLDT---FAVNV--CLDSTDADRCQIDAHGNLILGL--CGTTDADFDDLASCLEAAGPETITTLYLYRNELTTLPEGIFGGL 89
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig109.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K2E6_9PHAE8.820e-537.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 70..93
e-value: 5.0
score: 15.7
coord: 94..117
e-value: 0.034
score: 23.3
coord: 142..165
e-value: 6.8E-4
score: 28.9
coord: 118..141
e-value: 5.9E-5
score: 32.5
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 27..196
e-value: 2.3E-28
score: 101.0
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 120..176
e-value: 6.7E-13
score: 48.2
NoneNo IPR availablePANTHERPTHR24373SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEINcoord: 69..176
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..308
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 69..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig109contigC-tenellus_contig109:10932..15466 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig109.1.1mRNA_C-tenellus_contig109.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig109 10384..15959 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig109.1.1 ID=prot_C-tenellus_contig109.1.1|Name=mRNA_C-tenellus_contig109.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=309bp
MTLARILGFLAITLQTLGGFAHDIKGCLTAVEDSNYRCGSATDTILDLST
CGLEDDDMDAIRACIETRGVASITKLYLHKNKLRNLKEGLFLGMSSLKQL
EIDHNHLSTVPKEIFYGLGELHELFLHSNALTHLPNGVFEGLLKLEALYL
HQNALTTLPKGIFADLPALGTLLLGGQFDGNLNLQCRPDVNGPKVFWPEN
GSETGTCGCELIDYSNYSVIISNMCGSQVCTPGTTGYECTDEPGLDTDMC
IPLGNGTCTSKKQCCHDTNKNKKAKCRAGRCCNKMGKKCKKDWHCCDGMS
CSNKRCVV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt