mRNA_C-tenellus_contig109.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig109.1.1
Unique NamemRNA_C-tenellus_contig109.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig109.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig109contigC-tenellus_contig109:10384..15959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1718
Hectar predicted targeting categorysignal peptide
Exons13
Cds size927
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789153.8300445-UTR-C-tenellus_contig109:10383..109311680789153.8300445-UTR-C-tenellus_contig109:10383..10931Choristocarpus tenellus KU2346UTRC-tenellus_contig109 10384..10931 -
1680789153.9873316-UTR-C-tenellus_contig109:15466..155721680789153.9873316-UTR-C-tenellus_contig109:15466..15572Choristocarpus tenellus KU2346UTRC-tenellus_contig109 15467..15572 -
1680789153.9976542-UTR-C-tenellus_contig109:15822..159591680789153.9976542-UTR-C-tenellus_contig109:15822..15959Choristocarpus tenellus KU2346UTRC-tenellus_contig109 15823..15959 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789153.8432472-CDS-C-tenellus_contig109:10931..109801680789153.8432472-CDS-C-tenellus_contig109:10931..10980Choristocarpus tenellus KU2346CDSC-tenellus_contig109 10932..10980 -
1680789153.8529162-CDS-C-tenellus_contig109:11246..113941680789153.8529162-CDS-C-tenellus_contig109:11246..11394Choristocarpus tenellus KU2346CDSC-tenellus_contig109 11247..11394 -
1680789153.862605-CDS-C-tenellus_contig109:11862..119701680789153.862605-CDS-C-tenellus_contig109:11862..11970Choristocarpus tenellus KU2346CDSC-tenellus_contig109 11863..11970 -
1680789153.873292-CDS-C-tenellus_contig109:12139..121861680789153.873292-CDS-C-tenellus_contig109:12139..12186Choristocarpus tenellus KU2346CDSC-tenellus_contig109 12140..12186 -
1680789153.884921-CDS-C-tenellus_contig109:12376..124361680789153.884921-CDS-C-tenellus_contig109:12376..12436Choristocarpus tenellus KU2346CDSC-tenellus_contig109 12377..12436 -
1680789153.9013076-CDS-C-tenellus_contig109:12832..129041680789153.9013076-CDS-C-tenellus_contig109:12832..12904Choristocarpus tenellus KU2346CDSC-tenellus_contig109 12833..12904 -
1680789153.913554-CDS-C-tenellus_contig109:13141..132131680789153.913554-CDS-C-tenellus_contig109:13141..13213Choristocarpus tenellus KU2346CDSC-tenellus_contig109 13142..13213 -
1680789153.9294598-CDS-C-tenellus_contig109:13514..135861680789153.9294598-CDS-C-tenellus_contig109:13514..13586Choristocarpus tenellus KU2346CDSC-tenellus_contig109 13515..13586 -
1680789153.9397876-CDS-C-tenellus_contig109:14004..140761680789153.9397876-CDS-C-tenellus_contig109:14004..14076Choristocarpus tenellus KU2346CDSC-tenellus_contig109 14005..14076 -
1680789153.95249-CDS-C-tenellus_contig109:14412..145021680789153.95249-CDS-C-tenellus_contig109:14412..14502Choristocarpus tenellus KU2346CDSC-tenellus_contig109 14413..14502 -
1680789153.9633114-CDS-C-tenellus_contig109:14749..148101680789153.9633114-CDS-C-tenellus_contig109:14749..14810Choristocarpus tenellus KU2346CDSC-tenellus_contig109 14750..14810 -
1680789153.9755478-CDS-C-tenellus_contig109:15390..154661680789153.9755478-CDS-C-tenellus_contig109:15390..15466Choristocarpus tenellus KU2346CDSC-tenellus_contig109 15391..15466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig109.1.1prot_C-tenellus_contig109.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig109 10932..15466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig109.1.1

>prot_C-tenellus_contig109.1.1 ID=prot_C-tenellus_contig109.1.1|Name=mRNA_C-tenellus_contig109.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=309bp
MTLARILGFLAITLQTLGGFAHDIKGCLTAVEDSNYRCGSATDTILDLST
CGLEDDDMDAIRACIETRGVASITKLYLHKNKLRNLKEGLFLGMSSLKQL
EIDHNHLSTVPKEIFYGLGELHELFLHSNALTHLPNGVFEGLLKLEALYL
HQNALTTLPKGIFADLPALGTLLLGGQFDGNLNLQCRPDVNGPKVFWPEN
GSETGTCGCELIDYSNYSVIISNMCGSQVCTPGTTGYECTDEPGLDTDMC
IPLGNGTCTSKKQCCHDTNKNKKAKCRAGRCCNKMGKKCKKDWHCCDGMS
CSNKRCVV*
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mRNA from alignment at C-tenellus_contig109:10384..15959-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig109.1.1 ID=mRNA_C-tenellus_contig109.1.1|Name=mRNA_C-tenellus_contig109.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=5576bp|location=Sequence derived from alignment at C-tenellus_contig109:10384..15959- (Choristocarpus tenellus KU2346)
CACAAATTGCATTCCTCCCCTTCACAGAACGTACCATTTAATTACCTACC
ACTACACTCCTTCTGGTGTATTTGCTATCGTCCTGTTGGTGTTGAACAAA
CAAGACCTGTTGTTTTTGTGCTACGTTTTTCGGAGAGGTGAGTACCTTGA
AATGACCGACCACATCCATAATGTCACAGCATGCCTTTCATCGTTCAAGC
TTACACCTCCAAGTGCTCAGATCCTTCTTCCATACCATTCGTATCGAAAG
ATCTTATGTTGTTATTGGTGTCTTCACATGCCTGTCACTGTCAACGTCAC
AAGTTCAGTCTACCTAACGACAAAAAAACGCATCACTTAAGAACTCTTCG
TCATCATCCTGTCCTTCGTCGTCACCTGTCCGACTAGCGAACCACCACTC
GAAGGATCAATCACTCGCTACACTTGCTGTACAGCAAAGAAGGGGCACAG
CCAAGAAAAGAGTACGTATCTCCGTTACCACGATTGGAGTACCATGACTC
TCGCAAGAATTTTGGGATTTCTTGCGATCACCCTACAAACACTTGGCGGG
TTCGCACACGACATTAAAGGTATGTTTGAAGCGGATGACTAATATTCCTC
CCCGGTAAGGCTGCAGCGGTAGAGGTAGCTGCCCTTGGTACATCCCCGTC
CAGTCTTGGCCAGTAACAGTCGCACCTCAGAATGGTCGGATACATGCATT
CTCCAGTTGTGTGCCAAATCACAGTCTTGTTGGTATCGCTTCTCCGAAAA
CTCGTGCGGTAATACTGGATTCGAATCAATTAAGTCTACATTCGATAGGT
CTATACTAGTACTACCTACCTAATGAATTGGGTGTATGGCAGAGGTCTTG
TACTGAACAACCTATCAGCTGGTCTCGGTATCTACAATGAAAAAATCCCC
ACATATTTACTGCTTGCATACCATGCGCAGGAGCTCAGCACAGGACAAGC
TACAAACATCTTATCACCTTTTGTGCTGAATATCCATCTTTCCCCATGTG
ACGAAGTTGGTGTCCTCCATATCTTGTTCTGACCAGATGGACATACCTCC
TGTAGCCAATGATTGCGACAAAATATTACCAAGCATACGAAACAAATCCT
TCCCTATACTCGTCTTCTCCCTTACCTGTCGATGGATCTGATCAAGCAGG
TTGTCTCACAGCTGTAGAGGATAGCAACTACCGGTGTGGTTCAGCTACTG
ATACCATCCTGTAAGTATAGGTATTATCTGTAACTTCTATCGCCTCTTTC
TCATAGTTGAATCATGCCTAAGTAAGGCATAATTGCCCGTGATGTATTGT
TAGGGTTGTTTGGATGCTGTTACGATCAATTTCATGAAAGTTTATTCTTC
AAAATAACCGAAACTTCACAGCCTTTCAACCGAATTCCATACACCTCAAA
TACAATACTTGCAGATTCTATCAAATGTAATCTTCCACTTTTCTCCGTTA
TTGCAAGTGATCTATCCACCTGTGGACTAGAAGATGATGATATGGATGCC
ATCAGGGCCTGCATTGAAACTCGGGGGGTGGCGAGCATCACAAAGTTGTA
AGTGATCATGATTTGTTTCGACCAGTGCTGAAACAAAACGAGATGCTCAG
TATTTCCCTATGTGATAAGTGAATAGTTGCTTCAGATTTAACGCGCAAAC
CCCCGAAATATCTCGTGTTCGGGAGTTACATCCTAAACAAAAAATGAAGC
ACAGAATGGATTGCTGTTGTCCCACCTCTGAAGCCTAGGGCAATACATTC
TGTCTGCGCTGCATGATGGCACAGTAGTGGAAGATCCTATTCACATCAGC
AGAGAATTCATGAACCAACAATGTGACACGTTTCCCACTCACCATGTTGA
TGTCTGGTTTGATCCATTTTCTCTGCCTACCAGGTATCTACACAAAAACA
AGCTCAGAAATTTAAAAGAAGGGTTATTCCTGGGTATGAGCAGCTTGAAG
CAGTTGTGAGTGCTGTACGGTATTGTGACATGTTATTAGATCGGTTGGTT
TCTGTGAGGACTTATCCAGTTTTGAGACCATTTGCAACACCAAAATGATC
TTGCGCATGCCTGGTGCAAGACACTCATGGGTAGCGCTTGCAGAGAAGGT
GTTGCAAAATTCACTGACCTGACATCATAGCTTTCTCATTGCACGTCCAA
AATCGATCCTTTGATAGCACATGGTCTCAATGTTGAGTCCCAGAGCACCC
TTGGTCAAGCGGTTGGACATGATGACAGGCAATGATCTGGCTACCCTCAA
CAACACAGAACACTACTGTTGCCTAGCTGGTACTCGTGGTTGGTATGAAC
TGCCCATCTCACTTGTTCCAGGTGAAGCTAGAATGACAAAAAAAATGAAC
CCCTACCCTGTGCATGCCATCAGGGAGATCGACCATAACCACCTGTCGAC
AGTTCCAAAAGAGATATTCTATGGTCTGGGGGAGCTACATGAATTGTGAG
TATGGCACTTATTGATAATCGAACAGACACAAATCTGTTCTTTTGCTTTT
GGAACTTGTGTCTTTAGCATATTGATATTATATGGACACTTTGTTGAGGT
GAGATCCTGTAGAATAGATAGACATCAGATGCATTTTGCTGTACCTAAAA
ACGTCTTTTTCGCATTAAACCCGTACGCAACCAGTTGGGTCGTCACGTCC
CAACCTTGGTGTGCTTTTGAACATCTACGAGATTGTACTGCAGATGCATA
CCTCATGTGACGTTTCATTCTTACCTCACACCACCCTTCCATAAAGGTTT
CTGCACAGCAACGCCCTGACCCACCTTCCCAATGGAGTGTTTGAGGGTCT
GCTGAAGCTTGAAGCTCTGTGAGTGGCATTGCATATTGCGTGCTTATCTA
CCTGCATTTCTTCCTAAGGACTTACTCCACTAGTTCCTGTGTCCTCTGCT
TGCCCCCTAAGTAGAAGAGACTGCGAACCCGTTGGTGCAGTAAATGATGC
TAACCTGTGGAAGATATACAAATACCCCGTCTCCTTGTCCTGTGCCTGGA
ACGCCTGCTATTTTGTTGCTATGGTGCTCCCCGTTGTGCAACCATACCTT
TCCAGATACCTCCATCAAAACGCTTTGACGACACTGCCAAAGGGGATTTT
TGCTGACTTACCTGCTCTTGGCACACTGTGAGTGACCATATCAAGAGTAT
ATACCTGGGTTTTAGGGCAAGATGCAAACTGGTAGTCCAACCAAATCGCT
GGCAAGGTCAATCTCTTTTGTCAGGGAACTACATGGTATTTCTATGCTTT
TTATGTATTTCTAACTCCCCGATCTTGCAGCAAAGTGGTATGGACCCATT
GTGATTTAGTGTAGTGCCTCCATGTGTACTTGCTAATGAGGAACCATTTG
TCATCTTGTCTTGCTGTCACTTCGGCAATATCTACCTCCCCCTGCCCTTC
AATGGTGAACAAGAAAAATAGAAACCTTGAGTACATTATTATTACGTAAA
TCAAATATATATAATGATGTCAACTCTCTGAACTTCCCTGTGCCATTGCA
TCTGTCGGACATGGCTGGGATAGCCTTCTTGGTGGACAGTTTGACGGAAA
CCTCAACCTTCAATGCAGACCTGATGTGAATGGGTGAGTTTTTCTTTGCA
GATGGATGCCAAGGCAGTACACCACTGTGGTTTCTTCGAAAATCAGTCAA
GAATGTTTTTTCCCTGATAGTTAAAGGCTCATATACAACCTTCCACGTTT
CCGTGCATTATCTTACAATTTTTCTTGACGTCACATGTTGTCCCATCCTC
GATCATCGATGCTTTTTTCGCAGCCCAAAGGTATTCTGGCCAGAAAATGG
CAGTGAGACGGGAACATGCGGTGAGTCCCAACGTTCTTCATCGAACACTA
TTCTTCCACTACAGCACTGTGTTATATTTGGTAGCTTTTCTACCTTTGTT
ATGGGAATCAAGGGCACGGAGTCCATATTTTTTGTCTGCCACCGATACAA
CAACGAGCGCCATGCCACCACCACTTTGTTGTGATGCAGGATGTGAGCTT
ATTGACTACTCGAACTACAGCGTCATTATATCCAATATGTGTGGCTCTCA
AGTGTGCACCCCAGGCACCACAGGATATGAATGCACAGATGAGCCAGGTG
ATGACTAAGAAGAAACATGATGTGATATGTGTTTTGAGTTGCAAGTGCTC
CTCGCTAAAGTGCCTTTGTCATATACACGTCAATGCCTAGGAACTTCATT
AACATCTCCTGGAGATGATCCTGTATTTTACGCTCAGGTGTCTGCCTTGT
TCCCATATTACCACGCGGCTGAGCACCAAGTTCACTATATTGTAGGAACA
ACCATGGAGCTCCGAGTACAGGACTATGTGCTTTGGGAAATATTTGCCTC
TGTGGTATGAGCAAAATACTGTCTTTTACTGTTATCTTGAGTCTTTTGAC
CGTGTTTCAATGTGGAATGAGGTTCTTTTGGACAAGCCTTCACCACTGCA
TGTAACTGAGAGATACCTGTCCACCGATCCCTCATCACATTGTGCAGTCA
CTACATGAGCCCACTTTACAGTGTTACTCAAGTTAGACATAACCTCCCAT
CCCTTGAAATACCAGGTCTTGATACTGACATGTGCATCCCTCTGGGCAAT
GGAACATGTACCTCGAAGAAGCAGTGTTGCCATGACACCAACAAAAACAA
GAAGGCAAAGTGCAGGGCAGGAAGGTGCTGCAACAAGATGGGAAAGAAGT
GCAAGAAAGACTGGTACGATGTCGCCATTCACAGCTCTCTAGCCTTCAAT
ATTTGGCTTGAATTCCTTTCAAAAATGTCTGGTCATGCCAATCATGATTA
CATTGGGCGTTCTCAGTTGAGTCTTATGTTGTCCTCAAAACGAATTTCCA
ATCACACTTAGAGTGCCCTGTGCACAGAGTGTAGCGAGCAGCATAGTATG
CCCACCACATCCTTGTATCCACTATTGACATCTGTAGTATACTCATCGAA
TTTTGTTGACCTACATGCTCACAATCCAGGCACTGCTGCGACGGCATGAG
CTGCTCCAACAAGAGATGTGTCGTCTAGGATGTGTCGTGTGAGGATGGAT
TCTCCATTTTGAACTTTGAGAGTGCAGGGTCACAGATGGTCAGCCTTGCC
TGTACTTGAGCGGCCAATAAACTTAGGAGAGACTGGTGTGTGTTGAGTAG
ACCTTGACCAAGTAAGACATTCTGAGCGTGTTGACTGATTTTTAGGGATT
TCGATCATATTTCTGTTACACAGTAATCCTTTCTTAATGTTGATATTCAC
TGCGTGTATAGTTCGTTGAGTATTTTGTTTGGTTCATACTCGCTTTGGTT
GAGCTAGAGAGGAGTGTGTATGTATGCAATCTTCACCCTTATTTAATTTA
TCATTTTATCTTGACACATCAAGCAAAATATTCTTAGCTCAGTGTGTCCG
AGTCTTTAGTATATATATTTAGTGGACATCAACCAAGAGAGGTACCTAGT
TTTTGAGTGCACTTGCTAGTAGAGAGTGGTAGTACAGCAGAAAGTATATT
TTGTATGTATGCTGTGGTAGACTGTGAGAGAAAAGGTCAGAAATATATGT
ATATGTATGTGCTTTGTTGCTTTAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig109:10384..15959-

>mRNA_C-tenellus_contig109.1.1 ID=mRNA_C-tenellus_contig109.1.1|Name=mRNA_C-tenellus_contig109.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=927bp|location=Sequence derived from alignment at C-tenellus_contig109:10384..15959- (Choristocarpus tenellus KU2346)
ATGACTCTCGCAAGAATTTTGGGATTTCTTGCGATCACCCTACAAACACT
TGGCGGGTTCGCACACGACATTAAAGGTTGTCTCACAGCTGTAGAGGATA
GCAACTACCGGTGTGGTTCAGCTACTGATACCATCCTTGATCTATCCACC
TGTGGACTAGAAGATGATGATATGGATGCCATCAGGGCCTGCATTGAAAC
TCGGGGGGTGGCGAGCATCACAAAGTTGTATCTACACAAAAACAAGCTCA
GAAATTTAAAAGAAGGGTTATTCCTGGGTATGAGCAGCTTGAAGCAGTTG
GAGATCGACCATAACCACCTGTCGACAGTTCCAAAAGAGATATTCTATGG
TCTGGGGGAGCTACATGAATTGTTTCTGCACAGCAACGCCCTGACCCACC
TTCCCAATGGAGTGTTTGAGGGTCTGCTGAAGCTTGAAGCTCTATACCTC
CATCAAAACGCTTTGACGACACTGCCAAAGGGGATTTTTGCTGACTTACC
TGCTCTTGGCACACTCCTTCTTGGTGGACAGTTTGACGGAAACCTCAACC
TTCAATGCAGACCTGATGTGAATGGCCCAAAGGTATTCTGGCCAGAAAAT
GGCAGTGAGACGGGAACATGCGGATGTGAGCTTATTGACTACTCGAACTA
CAGCGTCATTATATCCAATATGTGTGGCTCTCAAGTGTGCACCCCAGGCA
CCACAGGATATGAATGCACAGATGAGCCAGGTCTTGATACTGACATGTGC
ATCCCTCTGGGCAATGGAACATGTACCTCGAAGAAGCAGTGTTGCCATGA
CACCAACAAAAACAAGAAGGCAAAGTGCAGGGCAGGAAGGTGCTGCAACA
AGATGGGAAAGAAGTGCAAGAAAGACTGGCACTGCTGCGACGGCATGAGC
TGCTCCAACAAGAGATGTGTCGTCTAG
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