prot_C-tenellus_contig10318.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig10318.1.1
Unique Nameprot_C-tenellus_contig10318.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length207
Homology
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5JMA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA7_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 6.660e-38
Identity = 77/205 (37.56%), Postives = 119/205 (58.05%), Query Frame = 0
Query:    2 VLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLSRALDKSENHPSVDENTSYREAVGSLM 206
            V+ +A+++  +L HWDVKQA+I A ++EG+++R  +GCG  SGK+V++ +ALYG KQS  E+       L + G+EQCR DPCV   V DG V  +I  +VDD+LVA          + + ++F ++D G+  +Y G  I+ D       +SQT YI+S+ +RF +          D      K ++ P+VD+    REA+G LM
Sbjct:   76 VITVASEKGKKLAHWDVKQAYIHAKLKEGLYLRFPEGCGSMSGKVVKVERALYGLKQSGHEWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREEFFASLNKKFPVKDLGECTWYDGYAIAMDIENDITRLSQTAYIESILKRFDVTTTAFTPAAADADLGP-KRDDEPAVDK--PVREAIGCLM 277          
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 1.260e-37
Identity = 79/205 (38.54%), Postives = 120/205 (58.54%), Query Frame = 0
Query:    2 VLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLSRALDKSENHPSVDENTSYREAVGSLM 206
            V+A+A ++  +L HWDVKQA+I A ++E I++R  +GCG  SGK+V++ +ALYG KQS RE+       L + G+EQCR DPC+   V DG V  +I  +VDD+LVA        + + +  +F ++D G+  +Y GC I+ D      T+SQT  I+S+ +RF +          D      K ++ P+VD+    REA+G LM
Sbjct:  113 VIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIEYGYEQCRVDPCIFRKVVDGEVVGLIVINVDDILVAADEGEREDLFASLNNRFPVKDLGECTWYDGCAIAMDVENGITTLSQTAKIESMLKRFNVTTTAFTPTATDADIGP-KGDDEPAVDK--PVREAIGYLM 314          
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 7.130e-37
Identity = 82/206 (39.81%), Postives = 120/206 (58.25%), Query Frame = 0
Query:    2 VLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLSRALD-KSENHPSVDENTSYREAVGSLM 206
            V+A+A ++  +L HWDVKQA+I A +RE I++   +GC   SGK+V++ +ALYG KQS RE+       L + G+EQCR DPCV   V DG V  +I  +VDD+LVA        + + + ++F ++D G+  +Y GC I  D       +SQT YI+S+ +RF  D      IP      L  K ++ P+VD+    REA+G LM
Sbjct:   30 VIAVATEKGKKLAHWDVKQAYIHAKLREEIYLSFPEGCSSMSGKVVKIERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGDREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYIESMLKRF--DVTTIAFIPAATDADLGPKRDDEPAVDK--PVREAIGCLM 231          
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 7.690e-37
Identity = 79/205 (38.54%), Postives = 121/205 (59.02%), Query Frame = 0
Query:    2 VLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLSRALDKSENHPSVDENTSYREAVGSLM 206
            V+A+A ++  +L HWDVKQA+I A ++E I++R  +GCG  SGK+V++ +ALYG KQS RE+       L + G+EQCR DPCV   V DG V  +I  +VDD++VA        + + + ++F ++D G+  +Y GC I+ D       +SQT YI+S+ +RF +          D      K ++ P+VD+    REA+G LM
Sbjct:  310 VIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIVAADEGEREELFASLNKKFPVKDVGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGP-KRDDEPAVDK--PVREAIGCLM 511          
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.270e-36
Identity = 79/205 (38.54%), Postives = 120/205 (58.54%), Query Frame = 0
Query:    2 VLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLSRALDKSENHPSVDENTSYREAVGSLM 206
            V+A+A ++  +L HWDVKQA+I A ++E I++R  +GCG  SGK+V++ +ALYG KQS RE+       L + G+EQCR DPCV   V DG V  +I  +VDD+LVA        + + + ++F ++D G+  +Y GC I+ D       +SQT YI+ + +RF +          D      K ++ P+VD+    REA+G LM
Sbjct:  456 VIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVMYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIEGMLKRFDVTTTAFTPAATDADLGP-KRDDEPAVDK--PVREAIGCLM 657          
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5KDR1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR1_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 1.450e-36
Identity = 72/180 (40.00%), Postives = 111/180 (61.67%), Query Frame = 0
Query:    1 MVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLS 180
            ++LALA   + EL H D++QAF+Q+ +   +F++L  GCG  SGK+VR+ K+LYG KQ+SR F   LV  L++ GFEQ  +DPCVL ++    V  ++A HVDD+L AG       V + + +    ++ G++++++GC + RDR A T+ ISQ  Y +SV +RF +        P  LS
Sbjct:  271 LLLALACQYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCGTMSGKVVRLNKSLYGLKQASRTFYMRLVSDLKRIGFEQSLSDPCVLRFMMGDEVMGMVAIHVDDILYAGSKSFAETVVAALGDSLPTKNLGEVKFFLGCALRRDREAGTIEISQESYRRSVLERFNVVSTSSIPAPPLLS 450          
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5KG67_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG67_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 1.480e-36
Identity = 78/206 (37.86%), Postives = 120/206 (58.25%), Query Frame = 0
Query:    1 MVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLSRALDKSENHPSVDENTSYREAVGSLM 206
            M+ ALA + D E  H D+ QAF++A ++E IF+R+ +GCG  SGKIV++ K+LYG +Q+SRE+  LL   L   GFEQC AD CV  +V+ G V  ++  HVDD+   G  +        + E   ++  G++++Y GC   RDR A  +TISQ  Y + + +R+G++      +P    +  D   + PSV+    +R  VGSL+
Sbjct:   23 MLAALACELDLEFCHSDIDQAFVRAPLKEDIFMRMPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFRFVEGGEVVLLLEVHVDDIFAVGTKERCDQFGKDLGEYVPVKSLGELKWYSGCYYERDREAGRLTISQQTYTEELGERYGVEWGGGIPLPTTW-KLWDFDADEPSVEH--PFRALVGSLL 225          
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5JSV9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV9_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.500e-36
Identity = 69/157 (43.95%), Postives = 98/157 (62.42%), Query Frame = 0
Query:    1 MVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRY 157
            M+ ALA + D EL H+D+ QAF++A ++E IF+RL +GCG  SGKIV++ K+LYG +Q+SRE+  LL   L   GFEQC AD CV   V+ G V  ++A HVDD+   G  +        + E   ++  G++++Y GC   RDR A  +TISQ  Y
Sbjct:   23 MLAALACELDLELCHFDIDQAFVRAPLKEDIFMRLPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFSLVEKGEVVLILAVHVDDIFAVGTKERCDQFGKDLGEYVPVKSLGELQWYSGCYYERDREAARLTISQETY 179          
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 1.740e-36
Identity = 79/205 (38.54%), Postives = 120/205 (58.54%), Query Frame = 0
Query:    2 VLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLSRALDKSENHPSVDENTSYREAVGSLM 206
            V+A+A ++  +L HWDVKQA+I A ++E I++R  +GCG  SGK+V++ +ALYG KQ  RE+       L + G+EQCR DPCV   V DG V  +I  +VDD+LVA        + + + ++F ++D G+  +Y GC I+ D       +SQT YI+S+ +RF +          D      K ++ P+VD+    REA+G LM
Sbjct:  597 VIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGP-KRDDEPAVDK--PVREAIGCLM 798          
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5KU29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU29_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 2.080e-36
Identity = 74/176 (42.05%), Postives = 106/176 (60.23%), Query Frame = 0
Query:    1 MVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIP 176
            ++LA+A ++  +L HWDVKQAF  A + E +F+RL  GCG+ S K+V+  +A+YG KQS R++       L + GFEQC+ADPCV   +KD VV      +VDD+LVAG  D    +   + + F  +D G+  ++ GC + RD  A T+ ISQT YI S+  RF +      SIP
Sbjct:  214 LMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVVXXXXXYVDDILVAGSDDDCKELLDSLNKAFPTKDLGECVWFDGCAVERDPEAGTIRISQTAYIDSIMNRFDVQSTS--SIP 387          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMA7_9PHAE6.660e-3837.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUN0_9PHAE1.260e-3738.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXU1_9PHAE7.130e-3739.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE7.690e-3738.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE1.270e-3638.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KDR1_9PHAE1.450e-3640.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KG67_9PHAE1.480e-3637.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JSV9_9PHAE1.500e-3643.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE1.740e-3638.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KU29_9PHAE2.080e-3642.05Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..176
e-value: 8.0E-30
score: 104.2
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 1..204

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10318contigC-tenellus_contig10318:3666..4286 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10318.1.1mRNA_C-tenellus_contig10318.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig10318 2864..4493 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig10318.1.1 ID=prot_C-tenellus_contig10318.1.1|Name=mRNA_C-tenellus_contig10318.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=207bp
MVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMI
KALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAP
HVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTV
TISQTRYIKSVCQRFGMDGAKKRSIPHDLSRALDKSENHPSVDENTSYRE
AVGSLM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2