mRNA_C-tenellus_contig10318.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 353 bits (905), Expect = 1.240e-107 Identity = 197/488 (40.37%), Postives = 294/488 (60.25%), Query Frame = 1 Query: 1 LRFNKVWVEAVLPPGRRAIDTKWIHKRKINKFGEVVRHKARLVAKGFR*IKGSDYQDTFAPTLSPASLRMVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLSRALDKSENHPSVDENTS-----YREAVGSLM*ASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILSYLNMCPSVGLSFG-GFSTECELSAYADASYAGDWNNRRSVTGGAIS-------WM*KVQRVVALSSTESEYIALISVAQELLFLRSVFEFIQPQFPRRCIDLFEDNDGACKLVRNATRSTRTKHIDVRHHFLSDLSRKGEIRVVFVGTANQRADVLTKNLPVRDFRRHVKF 1425 +R + A +P ID +W+ K K ++ G++V+ KARLVAKGF+ G DY +TF+PT + AS R+V+ALA + EL HWD++QAF+Q+++ +F++L GCG SGK+VR+ K+LYG KQ+SR F LV L++ GFEQ +DPCVL ++ V ++A HVDD+L AG + V + + + ++ G++ +++GC RDR A T+ +SQ YI+SV +RF + + SIP + ++ SV E+ +RE VGSLM + TR DI+NAVR VA++S PK +HW+A + IL+YL + L F S + Y DA +A N+RRSV+G + W+ K Q+ V+ S++E+EY+A+ +E LF+ + +F++P R ID+ EDN+GA L N S+R+KHIDVRHHFL +L+ +G I V V + Q AD+LTK LP F H F Sbjct: 475 IRAGTFTLAAKVPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNV--CRTSSIP------ASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDF 954
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE) HSP 1 Score: 350 bits (898), Expect = 1.340e-107 Identity = 197/488 (40.37%), Postives = 291/488 (59.63%), Query Frame = 1 Query: 1 LRFNKVWVEAVLPPGRRAIDTKWIHKRKINKFGEVVRHKARLVAKGFR*IKGSDYQDTFAPTLSPASLRMVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGM--DGAKKRSIPHDLSRALDKSENHPSVDENTSYREAVGSLM*ASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILSYLNMCPSVGLSFG-GFSTECELSAYADASYAGDWNNRRSVTGGAIS-------WM*KVQRVVALSSTESEYIALISVAQELLFLRSVFEFIQPQFPRRCIDLFEDNDGACKLVRNATRSTRTKHIDVRHHFLSDLSRKGEIRVVFVGTANQRADVLTKNLPVRDFRRHVKFLMN 1434 +R + A +P G ID +W+ K K ++ G++V+ KARLVAKGF+ G DY +TF+PT + AS R+V+ALA + EL HWD++QAF+Q+++ +F++L GCG SGK+VR+ K+LY KQ SR F N LV L++ GFEQ +DPCVL ++ V ++A HVDD+L AG + V + + + ++ G++++++GCE RDR A T ISQ YI+SV +F + + S +D +R+L + E V +RE VGSLM + TR DI A R VA+ S NPK W+A + IL+YL + L F S + Y DA +A N+RRSV+G + W+ K Q+ V+ S++E+EY+A+ +E LF+ + +F++P R ID+ EDN+GA L N S+R+KHIDVRHHFL +L+ +G I V V + Q AD+LTK LP F H F++ Sbjct: 9 IRAGTFTLAAKVPIGCNVIDARWVFKWKADEIGKIVKAKARLVAKGFKQKYGVDYVETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYELKQESRTFYNRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDREAGTKEISQESYIRSVLDKFNVCSTSSTPASPANDNNRSLKEDEGAKDVP----FREVVGSLMWIANRTRCDINIATRAVARQSHNPKKRDWKASQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFVLG 492
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE) HSP 1 Score: 357 bits (916), Expect = 1.640e-107 Identity = 196/486 (40.33%), Postives = 294/486 (60.49%), Query Frame = 1 Query: 1 LRFNKVWVEAVLPPGRRAIDTKWIHKRKINKFGEVVRHKARLVAKGFR*IKGSDYQDTFAPTLSPASLRMVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLSRALDKSENHPSVDENTSYREAVGSLM*ASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILSYLNMCPSVGLSFG-GFSTECELSAYADASYAGDWNNRRSVTGGAIS-------WM*KVQRVVALSSTESEYIALISVAQELLFLRSVFEFIQPQFPRRCIDLFEDNDGACKLVRNATRSTRTKHIDVRHHFLSDLSRKGEIRVVFVGTANQRADVLTKNLPVRDFRRHVKFLMN 1434 +R + +P G ID +W+ K K ++ G++V+ KARLVAKGF+ G DY +TF+PT + AS R+V+ALA + EL HWD++QAF+Q+++ +F+++ GCG S K+VR+ K+LYG KQ+SR F LV L++ GFEQ +DPCVL ++ V ++A HVDD+L AG + V + + + ++ G++++++GCE RDR A T+ ISQ YI+SV +RF + + SIP L+ D+S + +RE VGSLM + TR DI+NAVR VA++S PK +HW+A + IL+YL + L F S + Y DA +A +RRSV+G + W+ + Q+ V+ S++ESEY+A+ +E LF+ + +F++P R ID+ EDN+GA L N S+R+KHIDVRHHFL +L+ +G I V V + Q AD+LTK LP F H F + Sbjct: 706 MRAGTFTLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLCFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNI--VRTSSIPASLNND-DRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSESEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVHRDFALG 1188
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 357 bits (916), Expect = 4.800e-107 Identity = 203/507 (40.04%), Postives = 301/507 (59.37%), Query Frame = 1 Query: 1 LRFNKVWVEAVLPPGRRAIDTKWIHKRKINKFGEVVRHKARLVAKGFR*IKGSDYQDTFAPTLSPASLRMVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLSRALDKSENHPSVDENTS-----YREAVGSLM*ASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILSYLNMCPSVGLSFG-GFSTECELSAYADASYAGDWNNRRSVTGGAIS-------WM*KVQRVVALSSTESEYIALISVAQELLFLRSVFEFIQPQFPRRCIDLFEDNDGACKLVRNATRSTRTKHIDVRHHFLSDLSRKGEIRVVFVGTANQRADVLTKNLPVRDFRRHVKFLMNM*HNICV*FDLIFFVL 1482 +R + A +P G ID +W+ K K ++ G++V+ KARLVAKGF+ G DY +TF+PT + AS R+V+ALA + EL HWD++QAF+Q+++ +F++L GCG SGK+VR+ K+LYG KQ+SR F LV L++ GFEQ +DPCVL ++ V ++A HVDD+L AG + V + + + ++ G++ +++GC RDR A T+ +SQ YI+SV +RF + + SIP + ++ SV E+ +RE VGSLM + TR DI+NAVR VA++S PK +HW+A + IL+YL + L F S + Y DA +A N+RRSV+G + W+ K Q+ V+ S++E+EY+A+ +E LF+ + +F++P R ID+ EDN+GA L N S+R+KHIDVRHHFL +L+ +G I V V + Q AD+LTK LP F H F + V F FVL Sbjct: 742 IRAGTFTLAAKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNV--CRTSSIP------ASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFALGSRKYKSVFFIFCLFVL 1240
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 357 bits (916), Expect = 2.090e-106 Identity = 195/486 (40.12%), Postives = 294/486 (60.49%), Query Frame = 1 Query: 1 LRFNKVWVEAVLPPGRRAIDTKWIHKRKINKFGEVVRHKARLVAKGFR*IKGSDYQDTFAPTLSPASLRMVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLSRALDKSENHPSVDENTSYREAVGSLM*ASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILSYLNMCPSVGLSFG-GFSTECELSAYADASYAGDWNNRRSVTGGAIS-------WM*KVQRVVALSSTESEYIALISVAQELLFLRSVFEFIQPQFPRRCIDLFEDNDGACKLVRNATRSTRTKHIDVRHHFLSDLSRKGEIRVVFVGTANQRADVLTKNLPVRDFRRHVKFLMN 1434 +R + +P G ID +W+ K K ++ G++V+ KARLVAKGF+ G DY +TF+PT + AS R+V+ALA + EL HWD++QAF+Q+++ +F+++ GCG S K+VR+ K+LYG KQ+SR F LV L++ GFEQ +DPCVL ++ V ++A HVDD+L AG + V + + + ++ G++++++GCE RDR A T+ ISQ YI+SV +RF + + SIP L+ D+S + +RE VGSLM + TR DI+NAVR VA++S PK +HW+A + IL+YL + L F S + Y DA +A +RRSV+G + W+ + Q+ V+ S++E+EY+A+ +E LF+ + +F++P R ID+ EDN+GA L N S+R+KHIDVRHHFL +L+ +G I V V + Q AD+LTK LP F H F + Sbjct: 916 MRAGTFTLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNI--VRTSSIPASLNND-DRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVHRDFALG 1398
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE) HSP 1 Score: 338 bits (866), Expect = 2.740e-104 Identity = 193/476 (40.55%), Postives = 284/476 (59.66%), Query Frame = 1 Query: 1 LRFNKVWVEAVLPPGRRAIDTKWIHKRKINKFGEVVRHKARLVAKGFR*IKGSDYQDTFAPTLSPASLRMVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDL---SRALDKSENHPSVDENTSYREAVGSLM*ASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILSYLNMCPSVGLSFGGFST-ECELSAYADASYAGDWNNRRSVTGGAI-------SWM*KVQRVVALSSTESEYIALISVAQELLFLRSVFEFIQPQFPRRCIDLFEDNDGACKLVRNATRSTRTKHIDVRHHFLSDLSRKGEIRVVFVGTANQRADVLTKNLP 1395 +R + A +P G ID +W+ K K ++ G++V+ KARLVAKGF+ G DY +TF+PT + AS+R+V+ALA + EL H D++QAF Q+ + + ++L GC SGKIVR+ K+LYG KQ+SR F LV L + GFEQ +DPCVL ++ V +IA HVDD+L AG + + + + ++ G++ +++GC SRDR A T+ ISQ YI+SV +RF + + SIP SR++ + E V +RE VG LM + TR + +NAVR VA++S PK + W+A + ILSYL + L + +T + Y DA +A +RRSV+G + SW Q+ V+LS++E+EYIA+ +E LF+ + + ++P R ID+FEDN+GA L N S+R+KHIDVRHHFL +L+ +G I V V + Q AD+LTK LP Sbjct: 240 IRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNI--CRTSSIPASPANDSRSVMEDEEAGDVP----FREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALP 709
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 331 bits (848), Expect = 1.770e-103 Identity = 197/473 (41.65%), Postives = 276/473 (58.35%), Query Frame = 1 Query: 37 PPGRRAIDTKWIHKRKINKFGEVVRHKARLVAKGFR*IKGSDYQDTFAPTLSPASLRMVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLSRALDKSENHPSVDENTSYREAVGSLM*ASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILSYLNMCPSVGLSFGGFSTECELSAYADASYAGDWNNRRSVTGGA-------ISWM*KVQRVVALSSTESEYIALISVAQELLFLRSVFEFIQPQFPRRCIDLFEDNDGACKLVRNATRSTRTKHIDVRHHFLSDLSRKGEIRVVFVGTANQRADVLTKNLPVRDFRRHVKFLMN 1434 P GRR + +KW K NK G++ + KARLVA+GF I DY + +P S AS++++LA+A ++ +L HWDVKQAF A + E +F+RL GCG+ S K+V+ +A+YG KQS R++ L + GFEQC+ADPCV +KD VV D +LVAG D + + + + F +D G+ ++ GC + RD A T+ ISQT YI S+ RF + SIP + + S E REA+GS+M S +R DI+ AVR VA+++ P HW+A+ IL+YL +G+++ S L+ Y DASYA D +RRSV+G A IS K Q +V+LSSTE+EYIA +E LF+R+V FI P+ I + EDN GA LV+N S R+KHIDVR+HF+ L R G+I + FV T+ Q AD+LTK L + H + LMN Sbjct: 39 PEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTS--SIPASPGVDIGPKRDDESGGE-WPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSG-LGLAVYVDASYA-DAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMN 506
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE) HSP 1 Score: 330 bits (847), Expect = 1.500e-102 Identity = 185/473 (39.11%), Postives = 283/473 (59.83%), Query Frame = 1 Query: 55 IDTKWIHKRKINKFGEVVRHKARLVAKGFR*IKGSDYQDTFAPTLSPASLRMVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLSRALDKSENHPSVDENTSYREAVGSLM*ASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILSYLNMCPSVGLSF-----GGFSTECELSAYADASYAGDWNNRRSVTGG-------AISWM*KVQRVVALSSTESEYIALISVAQELLFLRSVFEFIQPQFPRRCIDLFEDNDGACKLVRNATRSTRTKHIDVRHHFLSDLSRKGEIRVVFVGTANQRADVLTKNLPVRDFRRHVKFLMNM 1437 I +K + K++ FG + KARLVA+G + D+ D +APT++ +S+RM+ ALA + D EL H+D+ QAF++A + E IF+R+ +GCG SGKIV++ K+LYG +Q+SRE+ LL L GFEQC AD C+ +V+ G V ++ HVDD+ G + + E ++ G++++Y GC DR A +TISQ Y + + +R+G++ +P + D + PSV+ +R VGSL+ +++TR DIAN+VR VA+YS PK+ HW+A L Y S G+SF GFS L + A YA +RRS +GG AI+W K Q+ V LS+T++EY+A+ + +E+LFLR V+ F+ P+ R CI L+EDN+GA ++ ++ ++ +KHIDVRHHFL L + E+ ++ V + Q AD LTK LP R+ H ++MN+ Sbjct: 151 IKSKLLFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLNENIFMRMPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCLFRFVEGGEVVLLLVVHVDDIFAVGTKERCDQFGKDLGEYVPVKSLGELKWYSGCYYEGDREAGRMTISQQTYTEELGERYGVEWGGGIPLPTTW-KLWDFDADEPSVEH--PFRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSFLGYAVRTSSFGISFQRGTVSGFS----LITFVYADYASRAADRRSESGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADSLTKALPEREVVFHRDYVMNL 616
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE) HSP 1 Score: 345 bits (884), Expect = 2.540e-101 Identity = 190/478 (39.75%), Postives = 289/478 (60.46%), Query Frame = 1 Query: 1 LRFNKVWVEAVLPPGRRAIDTKWIHKRKINKFGEVVRHKARLVAKGFR*IKGSDYQDTFAPTLSPASLRMVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLSRALDKSENHPSVDENTS----YREAVGSLM*ASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILSYLNMCPSVGLSFGGFSTECELSA--YADASYAGDWNNRRSVTGGAI-------SWM*KVQRVVALSSTESEYIALISVAQELLFLRSVFEFIQPQFPRRCIDLFEDNDGACKLVRNATRSTRTKHIDVRHHFLSDLSRKGEIRVVFVGTANQRADVLTKNLP 1395 +R + +P G ID +W+ K K ++ G++V+ KARLVAKGFR G DY +TF+PT + AS+R+++ALA D EL HWD++QAF+Q+ + +F++L GCG SGK+VR+ K+LYG KQ+SR F LV L++ GFEQ +DPCVL ++ V ++A HVDD+L AG + V + + ++ G++++++GC RDR A T+ ISQ YI+SV +RF + + SIP A ++N +++ + +RE VG LM + TR DI+NAVR VA++S PK W+A + IL+YL + L + ST ++ Y DA +A +RRSV+G + +W+ Q+ V+ S++E+EY+A+ +E LF+ + +F++P R ID+ EDN+GA L N S R+KHIDVRHHFL +L+ +G I + V + Q AD+LTK LP Sbjct: 807 IRAGTFTLAVKIPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSDLKRIGFEQSLSDPCVLRFMMGDEVLGMVAIHVDDILYAGTKSLAKVVVEALGDSLPTKNLGEVKFFLGCAFIRDREAGTIEISQESYIRSVLERFKI--CRTSSIP-----ASPANDNRSVMEDEEAGDVPFREVVGCLMWVANGTRPDISNAVRAVARHSHEPKKRDWKAAQKILNYLLATAHLTLKYKRDSTVDDVGTLVYVDADFASKATDRRSVSGALVIVAACLVAWLSWTQKCVSQSTSEAEYLAMGDGVKESLFVNGMLQFLRPSVEPRKIDVLEDNEGAIALAENPLSSCRSKHIDVRHHFLRNLTEEGVIEITHVPSEKQHADILTKALP 1277
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 317 bits (811), Expect = 2.040e-99 Identity = 172/435 (39.54%), Postives = 264/435 (60.69%), Query Frame = 1 Query: 160 DYQDTFAPTLSPASLRMVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLSRA-LDKSENHPSVDENTSYREAVGSLM*ASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILSYLNMCPSVGLSFG-GFSTECELSAYADASYAGDWNNRRSVTGG-------AISWM*KVQRVVALSSTESEYIALISVAQELLFLRSVFEFIQPQFPRRCIDLFEDNDGACKLVRNATRSTRTKHIDVRHHFLSDLSRKGEIRVVFVGTANQRADVLTKNLPVRDFRRHVKFLMNM 1437 D +T+APT++ +S+R++ A+A +++ L+H+D+KQAF+Q+D+ E +F+RL +GCG+ SG IV++ K+LYG KQ+SR++++ L L GF QC AD CV +++G V + HVDD+ G+ + + +++ GD+ +Y GC RD +A T+ ISQ Y + + FG++ K+ +P L + D+ E S +RE +GSLM + TR DIANAVR VA+Y ++PK HWRA IL Y+ +G++F G + + DA YA +RRSV+GG ISW + Q+ V LS+TE+EY++L V +E+LFLR V+ F+ P+ CI +FEDN GA +L +N ++ +KHIDVRHHF+ +L + EI + V +A Q AD LTK L DF H ++M+M Sbjct: 7 DCGETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVS----WPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 437 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10318.1.1 >prot_C-tenellus_contig10318.1.1 ID=prot_C-tenellus_contig10318.1.1|Name=mRNA_C-tenellus_contig10318.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=207bp MVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIback to top mRNA from alignment at C-tenellus_contig10318:2864..4493- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig10318.1.1 ID=mRNA_C-tenellus_contig10318.1.1|Name=mRNA_C-tenellus_contig10318.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1630bp|location=Sequence derived from alignment at C-tenellus_contig10318:2864..4493- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig10318:2864..4493- >mRNA_C-tenellus_contig10318.1.1 ID=mRNA_C-tenellus_contig10318.1.1|Name=mRNA_C-tenellus_contig10318.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=621bp|location=Sequence derived from alignment at C-tenellus_contig10318:2864..4493- (Choristocarpus tenellus KU2346)back to top |