mRNA_C-tenellus_contig10318.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10318.1.1
Unique NamemRNA_C-tenellus_contig10318.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 353 bits (905), Expect = 1.240e-107
Identity = 197/488 (40.37%), Postives = 294/488 (60.25%), Query Frame = 1
Query:    1 LRFNKVWVEAVLPPGRRAIDTKWIHKRKINKFGEVVRHKARLVAKGFR*IKGSDYQDTFAPTLSPASLRMVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLSRALDKSENHPSVDENTS-----YREAVGSLM*ASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILSYLNMCPSVGLSFG-GFSTECELSAYADASYAGDWNNRRSVTGGAIS-------WM*KVQRVVALSSTESEYIALISVAQELLFLRSVFEFIQPQFPRRCIDLFEDNDGACKLVRNATRSTRTKHIDVRHHFLSDLSRKGEIRVVFVGTANQRADVLTKNLPVRDFRRHVKF 1425
            +R     + A +P     ID +W+ K K ++ G++V+ KARLVAKGF+   G DY +TF+PT + AS R+V+ALA   + EL HWD++QAF+Q+++   +F++L  GCG  SGK+VR+ K+LYG KQ+SR F   LV  L++ GFEQ  +DPCVL ++    V  ++A HVDD+L AG   +   V + + +    ++ G++ +++GC   RDR A T+ +SQ  YI+SV +RF +   +  SIP         + ++ SV E+       +RE VGSLM  +  TR DI+NAVR VA++S  PK +HW+A + IL+YL     + L F    S +     Y DA +A   N+RRSV+G  +        W+ K Q+ V+ S++E+EY+A+    +E LF+  + +F++P    R ID+ EDN+GA  L  N   S+R+KHIDVRHHFL +L+ +G I V  V +  Q AD+LTK LP   F  H  F
Sbjct:  475 IRAGTFTLAAKVPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNV--CRTSSIP------ASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDF 954          
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 350 bits (898), Expect = 1.340e-107
Identity = 197/488 (40.37%), Postives = 291/488 (59.63%), Query Frame = 1
Query:    1 LRFNKVWVEAVLPPGRRAIDTKWIHKRKINKFGEVVRHKARLVAKGFR*IKGSDYQDTFAPTLSPASLRMVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGM--DGAKKRSIPHDLSRALDKSENHPSVDENTSYREAVGSLM*ASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILSYLNMCPSVGLSFG-GFSTECELSAYADASYAGDWNNRRSVTGGAIS-------WM*KVQRVVALSSTESEYIALISVAQELLFLRSVFEFIQPQFPRRCIDLFEDNDGACKLVRNATRSTRTKHIDVRHHFLSDLSRKGEIRVVFVGTANQRADVLTKNLPVRDFRRHVKFLMN 1434
            +R     + A +P G   ID +W+ K K ++ G++V+ KARLVAKGF+   G DY +TF+PT + AS R+V+ALA   + EL HWD++QAF+Q+++   +F++L  GCG  SGK+VR+ K+LY  KQ SR F N LV  L++ GFEQ  +DPCVL ++    V  ++A HVDD+L AG   +   V + + +    ++ G++++++GCE  RDR A T  ISQ  YI+SV  +F +    +   S  +D +R+L + E    V     +RE VGSLM  +  TR DI  A R VA+ S NPK   W+A + IL+YL     + L F    S +     Y DA +A   N+RRSV+G  +        W+ K Q+ V+ S++E+EY+A+    +E LF+  + +F++P    R ID+ EDN+GA  L  N   S+R+KHIDVRHHFL +L+ +G I V  V +  Q AD+LTK LP   F  H  F++ 
Sbjct:    9 IRAGTFTLAAKVPIGCNVIDARWVFKWKADEIGKIVKAKARLVAKGFKQKYGVDYVETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYELKQESRTFYNRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDREAGTKEISQESYIRSVLDKFNVCSTSSTPASPANDNNRSLKEDEGAKDVP----FREVVGSLMWIANRTRCDINIATRAVARQSHNPKKRDWKASQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFVLG 492          
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 357 bits (916), Expect = 1.640e-107
Identity = 196/486 (40.33%), Postives = 294/486 (60.49%), Query Frame = 1
Query:    1 LRFNKVWVEAVLPPGRRAIDTKWIHKRKINKFGEVVRHKARLVAKGFR*IKGSDYQDTFAPTLSPASLRMVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLSRALDKSENHPSVDENTSYREAVGSLM*ASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILSYLNMCPSVGLSFG-GFSTECELSAYADASYAGDWNNRRSVTGGAIS-------WM*KVQRVVALSSTESEYIALISVAQELLFLRSVFEFIQPQFPRRCIDLFEDNDGACKLVRNATRSTRTKHIDVRHHFLSDLSRKGEIRVVFVGTANQRADVLTKNLPVRDFRRHVKFLMN 1434
            +R     +   +P G   ID +W+ K K ++ G++V+ KARLVAKGF+   G DY +TF+PT + AS R+V+ALA   + EL HWD++QAF+Q+++   +F+++  GCG  S K+VR+ K+LYG KQ+SR F   LV  L++ GFEQ  +DPCVL ++    V  ++A HVDD+L AG   +   V + + +    ++ G++++++GCE  RDR A T+ ISQ  YI+SV +RF +   +  SIP  L+   D+S        +  +RE VGSLM  +  TR DI+NAVR VA++S  PK +HW+A + IL+YL     + L F    S +     Y DA +A    +RRSV+G  +        W+ + Q+ V+ S++ESEY+A+    +E LF+  + +F++P    R ID+ EDN+GA  L  N   S+R+KHIDVRHHFL +L+ +G I V  V +  Q AD+LTK LP   F  H  F + 
Sbjct:  706 MRAGTFTLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLCFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNI--VRTSSIPASLNND-DRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSESEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVHRDFALG 1188          
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 357 bits (916), Expect = 4.800e-107
Identity = 203/507 (40.04%), Postives = 301/507 (59.37%), Query Frame = 1
Query:    1 LRFNKVWVEAVLPPGRRAIDTKWIHKRKINKFGEVVRHKARLVAKGFR*IKGSDYQDTFAPTLSPASLRMVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLSRALDKSENHPSVDENTS-----YREAVGSLM*ASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILSYLNMCPSVGLSFG-GFSTECELSAYADASYAGDWNNRRSVTGGAIS-------WM*KVQRVVALSSTESEYIALISVAQELLFLRSVFEFIQPQFPRRCIDLFEDNDGACKLVRNATRSTRTKHIDVRHHFLSDLSRKGEIRVVFVGTANQRADVLTKNLPVRDFRRHVKFLMNM*HNICV*FDLIFFVL 1482
            +R     + A +P G   ID +W+ K K ++ G++V+ KARLVAKGF+   G DY +TF+PT + AS R+V+ALA   + EL HWD++QAF+Q+++   +F++L  GCG  SGK+VR+ K+LYG KQ+SR F   LV  L++ GFEQ  +DPCVL ++    V  ++A HVDD+L AG   +   V + + +    ++ G++ +++GC   RDR A T+ +SQ  YI+SV +RF +   +  SIP         + ++ SV E+       +RE VGSLM  +  TR DI+NAVR VA++S  PK +HW+A + IL+YL     + L F    S +     Y DA +A   N+RRSV+G  +        W+ K Q+ V+ S++E+EY+A+    +E LF+  + +F++P    R ID+ EDN+GA  L  N   S+R+KHIDVRHHFL +L+ +G I V  V +  Q AD+LTK LP   F  H  F +       V F    FVL
Sbjct:  742 IRAGTFTLAAKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNV--CRTSSIP------ASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFALGSRKYKSVFFIFCLFVL 1240          
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 357 bits (916), Expect = 2.090e-106
Identity = 195/486 (40.12%), Postives = 294/486 (60.49%), Query Frame = 1
Query:    1 LRFNKVWVEAVLPPGRRAIDTKWIHKRKINKFGEVVRHKARLVAKGFR*IKGSDYQDTFAPTLSPASLRMVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLSRALDKSENHPSVDENTSYREAVGSLM*ASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILSYLNMCPSVGLSFG-GFSTECELSAYADASYAGDWNNRRSVTGGAIS-------WM*KVQRVVALSSTESEYIALISVAQELLFLRSVFEFIQPQFPRRCIDLFEDNDGACKLVRNATRSTRTKHIDVRHHFLSDLSRKGEIRVVFVGTANQRADVLTKNLPVRDFRRHVKFLMN 1434
            +R     +   +P G   ID +W+ K K ++ G++V+ KARLVAKGF+   G DY +TF+PT + AS R+V+ALA   + EL HWD++QAF+Q+++   +F+++  GCG  S K+VR+ K+LYG KQ+SR F   LV  L++ GFEQ  +DPCVL ++    V  ++A HVDD+L AG   +   V + + +    ++ G++++++GCE  RDR A T+ ISQ  YI+SV +RF +   +  SIP  L+   D+S        +  +RE VGSLM  +  TR DI+NAVR VA++S  PK +HW+A + IL+YL     + L F    S +     Y DA +A    +RRSV+G  +        W+ + Q+ V+ S++E+EY+A+    +E LF+  + +F++P    R ID+ EDN+GA  L  N   S+R+KHIDVRHHFL +L+ +G I V  V +  Q AD+LTK LP   F  H  F + 
Sbjct:  916 MRAGTFTLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNI--VRTSSIPASLNND-DRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVHRDFALG 1398          
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 338 bits (866), Expect = 2.740e-104
Identity = 193/476 (40.55%), Postives = 284/476 (59.66%), Query Frame = 1
Query:    1 LRFNKVWVEAVLPPGRRAIDTKWIHKRKINKFGEVVRHKARLVAKGFR*IKGSDYQDTFAPTLSPASLRMVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDL---SRALDKSENHPSVDENTSYREAVGSLM*ASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILSYLNMCPSVGLSFGGFST-ECELSAYADASYAGDWNNRRSVTGGAI-------SWM*KVQRVVALSSTESEYIALISVAQELLFLRSVFEFIQPQFPRRCIDLFEDNDGACKLVRNATRSTRTKHIDVRHHFLSDLSRKGEIRVVFVGTANQRADVLTKNLP 1395
            +R     + A +P G   ID +W+ K K ++ G++V+ KARLVAKGF+   G DY +TF+PT + AS+R+V+ALA   + EL H D++QAF Q+ +   + ++L  GC   SGKIVR+ K+LYG KQ+SR F   LV  L + GFEQ  +DPCVL ++    V  +IA HVDD+L AG   +   +   + +    ++ G++ +++GC  SRDR A T+ ISQ  YI+SV +RF +   +  SIP      SR++ + E    V     +RE VG LM  +  TR + +NAVR VA++S  PK + W+A + ILSYL     + L +   +T +     Y DA +A    +RRSV+G  +       SW    Q+ V+LS++E+EYIA+    +E LF+  + + ++P    R ID+FEDN+GA  L  N   S+R+KHIDVRHHFL +L+ +G I V  V +  Q AD+LTK LP
Sbjct:  240 IRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNI--CRTSSIPASPANDSRSVMEDEEAGDVP----FREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALP 709          
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 331 bits (848), Expect = 1.770e-103
Identity = 197/473 (41.65%), Postives = 276/473 (58.35%), Query Frame = 1
Query:   37 PPGRRAIDTKWIHKRKINKFGEVVRHKARLVAKGFR*IKGSDYQDTFAPTLSPASLRMVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLSRALDKSENHPSVDENTSYREAVGSLM*ASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILSYLNMCPSVGLSFGGFSTECELSAYADASYAGDWNNRRSVTGGA-------ISWM*KVQRVVALSSTESEYIALISVAQELLFLRSVFEFIQPQFPRRCIDLFEDNDGACKLVRNATRSTRTKHIDVRHHFLSDLSRKGEIRVVFVGTANQRADVLTKNLPVRDFRRHVKFLMN 1434
            P GRR + +KW    K NK G++ + KARLVA+GF  I   DY  + +P  S AS++++LA+A ++  +L HWDVKQAF  A + E +F+RL  GCG+ S K+V+  +A+YG KQS R++       L + GFEQC+ADPCV   +KD VV        D +LVAG  D    + + + + F  +D G+  ++ GC + RD  A T+ ISQT YI S+  RF +      SIP      +    +  S  E    REA+GS+M  S  +R DI+ AVR VA+++  P   HW+A+  IL+YL     +G+++   S    L+ Y DASYA D  +RRSV+G A       IS   K Q +V+LSSTE+EYIA     +E LF+R+V  FI P+     I + EDN GA  LV+N   S R+KHIDVR+HF+  L R G+I + FV T+ Q AD+LTK L     + H + LMN
Sbjct:   39 PEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTS--SIPASPGVDIGPKRDDESGGE-WPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSG-LGLAVYVDASYA-DAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMN 506          
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE)

HSP 1 Score: 330 bits (847), Expect = 1.500e-102
Identity = 185/473 (39.11%), Postives = 283/473 (59.83%), Query Frame = 1
Query:   55 IDTKWIHKRKINKFGEVVRHKARLVAKGFR*IKGSDYQDTFAPTLSPASLRMVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLSRALDKSENHPSVDENTSYREAVGSLM*ASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILSYLNMCPSVGLSF-----GGFSTECELSAYADASYAGDWNNRRSVTGG-------AISWM*KVQRVVALSSTESEYIALISVAQELLFLRSVFEFIQPQFPRRCIDLFEDNDGACKLVRNATRSTRTKHIDVRHHFLSDLSRKGEIRVVFVGTANQRADVLTKNLPVRDFRRHVKFLMNM 1437
            I +K +   K++ FG   + KARLVA+G    +  D+ D +APT++ +S+RM+ ALA + D EL H+D+ QAF++A + E IF+R+ +GCG  SGKIV++ K+LYG +Q+SRE+  LL   L   GFEQC AD C+  +V+ G V  ++  HVDD+   G  +        + E   ++  G++++Y GC    DR A  +TISQ  Y + + +R+G++      +P    +  D   + PSV+    +R  VGSL+  +++TR DIAN+VR VA+YS  PK+ HW+A    L Y     S G+SF      GFS    L  +  A YA    +RRS +GG       AI+W  K Q+ V LS+T++EY+A+  + +E+LFLR V+ F+ P+  R CI L+EDN+GA ++ ++   ++ +KHIDVRHHFL  L  + E+ ++ V +  Q AD LTK LP R+   H  ++MN+
Sbjct:  151 IKSKLLFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLNENIFMRMPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCLFRFVEGGEVVLLLVVHVDDIFAVGTKERCDQFGKDLGEYVPVKSLGELKWYSGCYYEGDREAGRMTISQQTYTEELGERYGVEWGGGIPLPTTW-KLWDFDADEPSVEH--PFRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSFLGYAVRTSSFGISFQRGTVSGFS----LITFVYADYASRAADRRSESGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADSLTKALPEREVVFHRDYVMNL 616          
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 345 bits (884), Expect = 2.540e-101
Identity = 190/478 (39.75%), Postives = 289/478 (60.46%), Query Frame = 1
Query:    1 LRFNKVWVEAVLPPGRRAIDTKWIHKRKINKFGEVVRHKARLVAKGFR*IKGSDYQDTFAPTLSPASLRMVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLSRALDKSENHPSVDENTS----YREAVGSLM*ASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILSYLNMCPSVGLSFGGFSTECELSA--YADASYAGDWNNRRSVTGGAI-------SWM*KVQRVVALSSTESEYIALISVAQELLFLRSVFEFIQPQFPRRCIDLFEDNDGACKLVRNATRSTRTKHIDVRHHFLSDLSRKGEIRVVFVGTANQRADVLTKNLP 1395
            +R     +   +P G   ID +W+ K K ++ G++V+ KARLVAKGFR   G DY +TF+PT + AS+R+++ALA   D EL HWD++QAF+Q+ +   +F++L  GCG  SGK+VR+ K+LYG KQ+SR F   LV  L++ GFEQ  +DPCVL ++    V  ++A HVDD+L AG   +   V   + +    ++ G++++++GC   RDR A T+ ISQ  YI+SV +RF +   +  SIP     A   ++N   +++  +    +RE VG LM  +  TR DI+NAVR VA++S  PK   W+A + IL+YL     + L +   ST  ++    Y DA +A    +RRSV+G  +       +W+   Q+ V+ S++E+EY+A+    +E LF+  + +F++P    R ID+ EDN+GA  L  N   S R+KHIDVRHHFL +L+ +G I +  V +  Q AD+LTK LP
Sbjct:  807 IRAGTFTLAVKIPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSDLKRIGFEQSLSDPCVLRFMMGDEVLGMVAIHVDDILYAGTKSLAKVVVEALGDSLPTKNLGEVKFFLGCAFIRDREAGTIEISQESYIRSVLERFKI--CRTSSIP-----ASPANDNRSVMEDEEAGDVPFREVVGCLMWVANGTRPDISNAVRAVARHSHEPKKRDWKAAQKILNYLLATAHLTLKYKRDSTVDDVGTLVYVDADFASKATDRRSVSGALVIVAACLVAWLSWTQKCVSQSTSEAEYLAMGDGVKESLFVNGMLQFLRPSVEPRKIDVLEDNEGAIALAENPLSSCRSKHIDVRHHFLRNLTEEGVIEITHVPSEKQHADILTKALP 1277          
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 317 bits (811), Expect = 2.040e-99
Identity = 172/435 (39.54%), Postives = 264/435 (60.69%), Query Frame = 1
Query:  160 DYQDTFAPTLSPASLRMVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMIKALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAPHVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTVTISQTRYIKSVCQRFGMDGAKKRSIPHDLSRA-LDKSENHPSVDENTSYREAVGSLM*ASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILSYLNMCPSVGLSFG-GFSTECELSAYADASYAGDWNNRRSVTGG-------AISWM*KVQRVVALSSTESEYIALISVAQELLFLRSVFEFIQPQFPRRCIDLFEDNDGACKLVRNATRSTRTKHIDVRHHFLSDLSRKGEIRVVFVGTANQRADVLTKNLPVRDFRRHVKFLMNM 1437
            D  +T+APT++ +S+R++ A+A +++  L+H+D+KQAF+Q+D+ E +F+RL +GCG+ SG IV++ K+LYG KQ+SR++++ L   L   GF QC AD CV   +++G V   +  HVDD+   G+ +        +     +++ GD+ +Y GC   RD +A T+ ISQ  Y + +   FG++  K+  +P  L  +  D+ E   S      +RE +GSLM  +  TR DIANAVR VA+Y ++PK  HWRA   IL Y+     +G++F  G      +  + DA YA    +RRSV+GG        ISW  + Q+ V LS+TE+EY++L  V +E+LFLR V+ F+ P+    CI +FEDN GA +L +N   ++ +KHIDVRHHF+ +L  + EI +  V +A Q AD LTK L   DF  H  ++M+M
Sbjct:    7 DCGETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVS----WPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 437          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10318.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKK1_9PHAE1.240e-10740.37Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5K9B2_9PHAE1.340e-10740.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L3I1_9PHAE1.640e-10740.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRL9_9PHAE4.800e-10740.04Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KZH7_9PHAE2.090e-10640.12Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV80_9PHAE2.740e-10440.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCG0_9PHAE1.770e-10341.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K307_9PHAE1.500e-10239.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JB16_9PHAE2.540e-10139.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JLN0_9PHAE2.040e-9939.54Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10318contigC-tenellus_contig10318:2864..4493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog164328.Phyra71794
PFAMsRVT_2
Model size1630
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.57e-30
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHW0@4776|Peronosporales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size621
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789125.9787807-UTR-C-tenellus_contig10318:2863..36651680789125.9787807-UTR-C-tenellus_contig10318:2863..3665Choristocarpus tenellus KU2346UTRC-tenellus_contig10318 2864..3665 -
1680789126.0012693-UTR-C-tenellus_contig10318:4286..44931680789126.0012693-UTR-C-tenellus_contig10318:4286..4493Choristocarpus tenellus KU2346UTRC-tenellus_contig10318 4287..4493 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789125.9920583-CDS-C-tenellus_contig10318:3665..42861680789125.9920583-CDS-C-tenellus_contig10318:3665..4286Choristocarpus tenellus KU2346CDSC-tenellus_contig10318 3666..4286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10318.1.1prot_C-tenellus_contig10318.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10318 3666..4286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10318.1.1

>prot_C-tenellus_contig10318.1.1 ID=prot_C-tenellus_contig10318.1.1|Name=mRNA_C-tenellus_contig10318.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=207bp
MVLALAADRDWELKHWDVKQAFIQADIREGIFVRLCDGCGKWSGKIVRMI
KALYGTKQSSREFNNLLVYVLEKCGFEQCRADPCVLHYVKDGVVCAVIAP
HVDDLLVAGKMDVLIWVRSRIKEQFSIEDFGDIEYYMGCEISRDRNAQTV
TISQTRYIKSVCQRFGMDGAKKRSIPHDLSRALDKSENHPSVDENTSYRE
AVGSLM*
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mRNA from alignment at C-tenellus_contig10318:2864..4493-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10318.1.1 ID=mRNA_C-tenellus_contig10318.1.1|Name=mRNA_C-tenellus_contig10318.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1630bp|location=Sequence derived from alignment at C-tenellus_contig10318:2864..4493- (Choristocarpus tenellus KU2346)
CTTCGGTTTAATAAAGTTTGGGTAGAGGCTGTATTACCCCCTGGACGCAG AGCTATAGACACGAAATGGATTCACAAGCGTAAAATCAACAAATTTGGTG AGGTAGTTAGACACAAGGCACGATTGGTAGCAAAAGGTTTTCGATAGATT AAGGGTTCAGATTATCAAGATACCTTTGCACCAACACTGTCCCCTGCATC TTTGAGAATGGTTTTAGCTTTGGCAGCTGACAGAGATTGGGAATTGAAAC ATTGGGATGTGAAACAGGCATTTATACAAGCTGACATCAGAGAAGGGATT TTTGTTCGTTTATGTGATGGGTGTGGAAAATGGTCTGGAAAAATTGTACG TATGATAAAAGCACTTTATGGCACCAAACAGTCAAGCAGAGAGTTCAATA ATCTGTTGGTGTACGTTTTGGAAAAGTGTGGTTTTGAGCAATGTAGAGCA GACCCTTGTGTGTTACACTACGTAAAAGATGGCGTTGTTTGTGCTGTGAT AGCCCCCCACGTAGATGACCTTTTGGTAGCTGGTAAAATGGATGTTTTGA TTTGGGTTCGCTCTAGGATTAAAGAGCAGTTTTCCATAGAAGACTTTGGT GATATTGAGTATTATATGGGTTGTGAGATTTCACGTGACAGAAATGCACA GACTGTTACCATCAGTCAGACTAGGTACATTAAGAGTGTTTGTCAAAGAT TTGGTATGGATGGGGCAAAGAAGAGGTCGATACCCCATGATCTCTCAAGG GCTTTAGACAAGAGTGAGAATCATCCAAGTGTAGATGAAAATACATCGTA CAGAGAGGCAGTTGGTAGTTTGATGTGAGCATCTGTTATGACTAGGCTTG ACATTGCAAATGCAGTTCGTGAAGTTGCCAAGTACAGTAGCAATCCCAAA GTCACACATTGGCGTGCAGTGAAATGTATTTTATCATATTTGAACATGTG TCCAAGTGTTGGATTGAGTTTTGGTGGTTTTAGTACTGAGTGTGAGTTGA GTGCGTATGCTGATGCTAGTTATGCTGGAGACTGGAATAATCGTAGGTCA GTGACTGGAGGAGCAATATCTTGGATGTGAAAGGTGCAAAGAGTTGTAGC TCTGTCTTCCACAGAGAGTGAATACATAGCACTTATTAGTGTGGCACAGG AATTACTTTTCTTAAGAAGTGTTTTTGAGTTTATTCAGCCGCAGTTTCCT AGGCGTTGCATTGACTTGTTTGAGGATAACGATGGTGCATGCAAACTAGT ACGAAATGCCACAAGATCTACTAGAACAAAGCACATTGATGTCCGACATC ATTTTTTGAGCGATTTGTCTAGAAAAGGAGAGATTCGTGTTGTTTTTGTT GGTACTGCAAACCAGAGGGCAGATGTCTTGACCAAGAATTTGCCAGTTCG AGATTTTAGACGACATGTGAAGTTTTTGATGAACATGTGACACAACATTT GTGTTTGATTTGATTTGATTTTTTTTGTTTTATGATTGTTTGAGAGTTAA TACTTGTTTTCAGCAAGGGGAGGATGTCGAATAACCTAGTGTTATCCTTA CGTTGTTTGTGCTGACACAAGTATATAACATAGGTTATACGTACGTTTAT ATTTGGTTAGGTATGATTCAGAGTACGTAC
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Coding sequence (CDS) from alignment at C-tenellus_contig10318:2864..4493-

>mRNA_C-tenellus_contig10318.1.1 ID=mRNA_C-tenellus_contig10318.1.1|Name=mRNA_C-tenellus_contig10318.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=621bp|location=Sequence derived from alignment at C-tenellus_contig10318:2864..4493- (Choristocarpus tenellus KU2346)
ATGGTTTTAGCTTTGGCAGCTGACAGAGATTGGGAATTGAAACATTGGGA
TGTGAAACAGGCATTTATACAAGCTGACATCAGAGAAGGGATTTTTGTTC
GTTTATGTGATGGGTGTGGAAAATGGTCTGGAAAAATTGTACGTATGATA
AAAGCACTTTATGGCACCAAACAGTCAAGCAGAGAGTTCAATAATCTGTT
GGTGTACGTTTTGGAAAAGTGTGGTTTTGAGCAATGTAGAGCAGACCCTT
GTGTGTTACACTACGTAAAAGATGGCGTTGTTTGTGCTGTGATAGCCCCC
CACGTAGATGACCTTTTGGTAGCTGGTAAAATGGATGTTTTGATTTGGGT
TCGCTCTAGGATTAAAGAGCAGTTTTCCATAGAAGACTTTGGTGATATTG
AGTATTATATGGGTTGTGAGATTTCACGTGACAGAAATGCACAGACTGTT
ACCATCAGTCAGACTAGGTACATTAAGAGTGTTTGTCAAAGATTTGGTAT
GGATGGGGCAAAGAAGAGGTCGATACCCCATGATCTCTCAAGGGCTTTAG
ACAAGAGTGAGAATCATCCAAGTGTAGATGAAAATACATCGTACAGAGAG
GCAGTTGGTAGTTTGATGTGA
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