prot_C-tenellus_contig10299.2.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig10299.2.1
Unique Nameprot_C-tenellus_contig10299.2.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length118
Homology
BLAST of mRNA_C-tenellus_contig10299.2.1 vs. uniprot
Match: A0A6H5KNQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ8_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.260e-8
Identity = 34/103 (33.01%), Postives = 53/103 (51.46%), Query Frame = 0
Query:   16 QQLLPPLNASDTFGWQPL----DSTLEDRVEIKGKAGEEKPLQLDVFHALWDLYNPDTSPRPTDTSRQGNSL--SREDALRLFPTGTTVKKSWKDKKGKDKWY 112
            +++ P    +D + W+      D    D +          PLQLDVFHALW+L++P  + RPT    +G     SR+ AL +FP GT V + + D +G+ K +
Sbjct: 1524 RRVGPGKGGADAWAWEYRGRYQDGAQSDWITEDEARDSFSPLQLDVFHALWELHHPSDATRPTGEPTRGEREVESRDRALEMFPRGTEVGRVFMDAEGRSKTF 1626          
BLAST of mRNA_C-tenellus_contig10299.2.1 vs. uniprot
Match: A0A6H5K948_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K948_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 5.860e-8
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 0
Query:   52 PLQLDVFHALWDLYNPDTSPRPTDTSRQGNSL--SREDALRLFPTGTTVKKSWKDKKGKDKWY 112
            PLQLDVFHALW+L++PD+ P+P     +G     SRE AL +FP GT V + + + +G+ + +
Sbjct: 1073 PLQLDVFHALWELHHPDSEPQPPGEPARGQRKVESRERALEMFPCGTVVGRIFTNAEGQSEVF 1135          
BLAST of mRNA_C-tenellus_contig10299.2.1 vs. uniprot
Match: A0A6H5JAJ3_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAJ3_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 8.610e-6
Identity = 29/59 (49.15%), Postives = 37/59 (62.71%), Query Frame = 0
Query:   52 PLQLDVFHALWDL-YNPDTSPRPTDTSRQGNS--LSREDALRLFPTGTTVKKSWKDKKG 107
            PLQLDVFHAL++L Y  + +PRP     +G     SRE AL+LFP GT V + + D  G
Sbjct: 1840 PLQLDVFHALYELFYGENGAPRPAGPPTRGEREVASREQALQLFPVGTQVGREFADSDG 1898          
BLAST of mRNA_C-tenellus_contig10299.2.1 vs. uniprot
Match: A0A6H5KNP4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP4_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.960e-5
Identity = 28/57 (49.12%), Postives = 34/57 (59.65%), Query Frame = 0
Query:   52 PLQLDVFHALW-DLYNPDTSPRPTDTSRQGNS--LSREDALRLFPTGTTVKKSWKDK 105
            PLQLDVFHALW D +  D +PRP     +G     +RE AL+ FP  T V K  +DK
Sbjct: 1592 PLQLDVFHALWEDYHGSDVAPRPPGAPTRGEREVATREAALQEFPLNTEVAKELRDK 1648          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10299.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KNQ8_9PHAE1.260e-833.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K948_9PHAE5.860e-844.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JAJ3_9PHAE8.610e-649.15RT_RNaseH_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KNP4_9PHAE2.960e-549.12Integrase catalytic domain-containing protein n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10299contigC-tenellus_contig10299:3920..4369 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10299.2.1mRNA_C-tenellus_contig10299.2.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig10299 3920..4815 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig10299.2.1 ID=prot_C-tenellus_contig10299.2.1|Name=mRNA_C-tenellus_contig10299.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=118bp
MTPDKTPRVDPTHTPQQLLPPLNASDTFGWQPLDSTLEDRVEIKGKAGEE
KPLQLDVFHALWDLYNPDTSPRPTDTSRQGNSLSREDALRLFPTGTTVKK
SWKDKKGKDKWYIGSGK*
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