mRNA_C-tenellus_contig10299.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10299.2.1
Unique NamemRNA_C-tenellus_contig10299.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10299.2.1 vs. uniprot
Match: A0A6H5KNQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ8_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.220e-7
Identity = 34/103 (33.01%), Postives = 53/103 (51.46%), Query Frame = 1 
Query:   46 QQLLPPLNASDTFGWQPL----DSTLEDRVEIKGKAGEEKPLQLDVFHALWDLYNPDTSPRPTDTSRQGNSL--SREDALRLFPTGTTVKKSWKDKKGKDKWY 336
            +++ P    +D + W+      D    D +          PLQLDVFHALW+L++P  + RPT    +G     SR+ AL +FP GT V + + D +G+ K +
Sbjct: 1524 RRVGPGKGGADAWAWEYRGRYQDGAQSDWITEDEARDSFSPLQLDVFHALWELHHPSDATRPTGEPTRGEREVESRDRALEMFPRGTEVGRVFMDAEGRSKTF 1626
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BLAST of mRNA_C-tenellus_contig10299.2.1 vs. uniprot
Match: A0A6H5K948_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K948_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.560e-6
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:  154 PLQLDVFHALWDLYNPDTSPRPTDTSRQGNSL--SREDALRLFPTGTTV 294
            PLQLDVFHALW+L++PD+ P+P     +G     SRE AL +FP GT V
Sbjct: 1073 PLQLDVFHALWELHHPDSEPQPPGEPARGQRKVESRERALEMFPCGTVV 1121
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10299.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNQ8_9PHAE6.220e-733.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K948_9PHAE2.560e-655.10Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10299contigC-tenellus_contig10299:3920..4815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size800
Hectar predicted targeting categoryother localisation
Exons2
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789124.684843-CDS-C-tenellus_contig10299:3919..42611680789124.684843-CDS-C-tenellus_contig10299:3919..4261Choristocarpus tenellus KU2346CDSC-tenellus_contig10299 3920..4261 +
1680789124.6940746-CDS-C-tenellus_contig10299:4357..43691680789124.6940746-CDS-C-tenellus_contig10299:4357..4369Choristocarpus tenellus KU2346CDSC-tenellus_contig10299 4358..4369 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789124.711693-UTR-C-tenellus_contig10299:4369..48151680789124.711693-UTR-C-tenellus_contig10299:4369..4815Choristocarpus tenellus KU2346UTRC-tenellus_contig10299 4370..4815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10299.2.1prot_C-tenellus_contig10299.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10299 3920..4369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10299.2.1

>prot_C-tenellus_contig10299.2.1 ID=prot_C-tenellus_contig10299.2.1|Name=mRNA_C-tenellus_contig10299.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=118bp
MTPDKTPRVDPTHTPQQLLPPLNASDTFGWQPLDSTLEDRVEIKGKAGEE
KPLQLDVFHALWDLYNPDTSPRPTDTSRQGNSLSREDALRLFPTGTTVKK
SWKDKKGKDKWYIGSGK*
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mRNA from alignment at C-tenellus_contig10299:3920..4815+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10299.2.1 ID=mRNA_C-tenellus_contig10299.2.1|Name=mRNA_C-tenellus_contig10299.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=896bp|location=Sequence derived from alignment at C-tenellus_contig10299:3920..4815+ (Choristocarpus tenellus KU2346)
ATGACCCCAGATAAAACACCTAGGGTAGACCCGACACACACCCCACAGCA
ACTCCTTCCCCCGCTTAACGCCTCTGACACTTTTGGTTGGCAACCTTTAG
ACTCTACCCTCGAAGACAGGGTAGAAATAAAAGGAAAAGCAGGAGAAGAG
AAGCCACTACAGTTAGATGTCTTCCATGCCCTATGGGACCTCTATAATCC
AGACACGAGCCCACGCCCTACTGACACCTCCCGCCAAGGAAACTCCTTGT
CTAGAGAGGATGCATTACGCCTTTTCCCCACAGGTACTACTGTCAAGAAG
TCATGGAAAGACAAGAAGGGAAAGGATAAGTGGTACATAGGTACAGTTTT
TGACTTCAAGCCACCCTACTGGAGGGTACGGTTTAATGACGGAGATTTGG
AAGAAATGATGAACAAAAGTGAAATGAGTCGTCGTTTCTCCGGAAAATAA
TCCAACAGGTAACCACTACGCATCCAGAAGGCAAGATACGTGAGAACTAA
CCGATTTATGGACTGACGTTGATGTTATGGCCTGTTTTACGCACTAGCAG
CTGTCAGTATGCTTCATGCTGGGGGGCATGAGACAGGCAATAATCAGACG
ATACTTGGCACTCTAGGAAAGCTGTACCTTAGAGAGAATGAATATATCCT
CAGAATTAGGCTAGACGCAGACAGATTTCCCCAAGGAGGATAAGGATACA
TGTTTAGGCCTAGTAGAGGTTTGGCATATTTTTCTGCCCTTCCTTCTCCC
TGCTACAGGATGATTTGAGGCGATTAATGATGTCTATTGTCTTCACCAGT
AACAATCACTTGTAGTAAATGCTGTTATATAGGATACATTCTTCTTCTGT
TTTATCTTTGGATTTTCTTATTTTCTCCATTTTGTTATCCTGAAGT
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Coding sequence (CDS) from alignment at C-tenellus_contig10299:3920..4815+

>mRNA_C-tenellus_contig10299.2.1 ID=mRNA_C-tenellus_contig10299.2.1|Name=mRNA_C-tenellus_contig10299.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=354bp|location=Sequence derived from alignment at C-tenellus_contig10299:3920..4815+ (Choristocarpus tenellus KU2346)
ATGACCCCAGATAAAACACCTAGGGTAGACCCGACACACACCCCACAGCA
ACTCCTTCCCCCGCTTAACGCCTCTGACACTTTTGGTTGGCAACCTTTAG
ACTCTACCCTCGAAGACAGGGTAGAAATAAAAGGAAAAGCAGGAGAAGAG
AAGCCACTACAGTTAGATGTCTTCCATGCCCTATGGGACCTCTATAATCC
AGACACGAGCCCACGCCCTACTGACACCTCCCGCCAAGGAAACTCCTTGT
CTAGAGAGGATGCATTACGCCTTTTCCCCACAGGTACTACTGTCAAGAAG
TCATGGAAAGACAAGAAGGGAAAGGATAAGTGGTACATAGGTTCCGGAAA
ATAA
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