prot_C-tenellus_contig10280.2.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-tenellus_contig10280.2.1
Unique Name	prot_C-tenellus_contig10280.2.1
Type	polypeptide
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length	107

Homology

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BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: UPI000CED088F (uncharacterized protein LOC112084350 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=UPI000CED088F)

HSP 1 Score: 77.0 bits (188), Expect = 3.260e-14
Identity = 37/103 (35.92%), Postives = 61/103 (59.22%), Query Frame = 0

Query:    1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSE 103
            C  C +G ++K    +  +V ++ P   + +DL GP   +SLGG +Y   +VDD +RFTW+R L++KS+ A + R W   +++     I  +R D GGE+Q+E
Sbjct:  698 CGACNQGKQVKVQHKRVPDVKSKAPLDLVHMDLMGPVQTESLGGKKYVFVLVDDFTRFTWVRFLREKSDTADSFRIWA-LQLMNERGSIKRVRSDHGGEFQNE 799

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BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: UPI000CED7C72 (uncharacterized protein LOC112089184 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=UPI000CED7C72)

HSP 1 Score: 76.6 bits (187), Expect = 4.510e-14
Identity = 37/103 (35.92%), Postives = 60/103 (58.25%), Query Frame = 0

Query:    1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSE 103
            C  C +G ++K    +  +V ++ P   + +DL GP   +SLGG +Y   +VDD +RFTW+R L++KS+ A + R W   + +     I  +R D GGE+Q+E
Sbjct:  696 CGACNQGKQVKVQHKRVPDVQSKAPLDLVHMDLMGPVQTESLGGKKYVFVLVDDFTRFTWVRFLREKSDTADSFRIWA-LQFMNERSSIKRVRSDHGGEFQNE 797

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BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: A0A151SK87_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SK87_CAJCA)

HSP 1 Score: 75.9 bits (185), Expect = 8.550e-14
Identity = 40/106 (37.74%), Postives = 54/106 (50.94%), Query Frame = 0

Query:    1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSEGFQ 106
            C  C KG + +        +    P   + +DL GP   KSLGG  YAL ++DD SRFTW+  +  K NA KA R   +        +I  +R D GGE+Q+E FQ
Sbjct:  686 CDACQKGKQTRASFKSKKVMSTSRPLELLHMDLFGPSRTKSLGGNTYALVLIDDYSRFTWVAFISHKDNAFKAFRIISKRIQNEKDLKIKSLRSDHGGEFQNESFQ 791

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BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: UPI000CECEE9C (uncharacterized protein LOC112086523 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=UPI000CECEE9C)

HSP 1 Score: 75.5 bits (184), Expect = 1.150e-13
Identity = 36/103 (34.95%), Postives = 61/103 (59.22%), Query Frame = 0

Query:    1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSE 103
            C  C +G ++K    +  +V ++ P   + +DL GP   +SLGG +Y   +VDD +RFTW+R L++KS+ A + R W   +++     I  +R D GGE+Q++
Sbjct:  679 CGACNQGKQVKVQHKRVPDVQSKAPLDLVHMDLMGPVQTESLGGKKYVFVLVDDFTRFTWVRFLREKSDTADSFRIWA-LQLMNERGSIKRVRSDHGGEFQNK 780

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BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: A0A6J0M3H4_RAPSA (uncharacterized protein LOC108838558 n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0M3H4_RAPSA)

HSP 1 Score: 73.6 bits (179), Expect = 5.240e-13
Identity = 36/103 (34.95%), Postives = 58/103 (56.31%), Query Frame = 0

Query:    1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSE 103
            C  C +G +++       +V A+ P   + +DL GP   +S+GG  Y   +VDD +RFTW+R L++KS A K+ + W    +   G  I  IR D GGE++++
Sbjct:  511 CGACNEGKQVRIQHKNVPDVQAKAPLDLVHMDLMGPMQTESIGGKRYVFVLVDDYTRFTWVRFLREKSEAPKSFKIWALQLINEKGG-IKKIRSDHGGEFENK 612

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BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: A0A6D2HW89_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HW89_9BRAS)

HSP 1 Score: 71.2 bits (173), Expect = 1.540e-12
Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 0

Query:    1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSE 103
            C  C +G +IK    K  +V ++     + +DL GP  V+S+GG  Y   +VDD SR+TW+R ++ KS+   + + W    +   G  +  IR D GGE+Q+E
Sbjct:  124 CGPCNQGKQIKVQHKKVADVQSKTVLDLVHMDLMGPMQVESIGGKRYVFVLVDDYSRYTWVRFIRDKSDTMASFKIWALQVITEKGS-LKRIRSDHGGEFQNE 225

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BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: Q60DG5_ORYSJ (Putative polyprotein n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q60DG5_ORYSJ)

HSP 1 Score: 70.9 bits (172), Expect = 4.810e-12
Identity = 39/107 (36.45%), Postives = 57/107 (53.27%), Query Frame = 0

Query:    1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSEGFQD 107
            C GC  G + +   P      A+     +  DL GP    + GG +Y L +VDD+SRF WIRLL  K  AA A++++     + SGR++  +R D GGE+ S  F +
Sbjct:  214 CDGCLAGKQRRVPFPDKARFRAQDALELVHGDLCGPIAPATPGGRKYFLLLVDDMSRFMWIRLLSGKHEAAAAIKQFKAGVEMESGRKLRALRTDRGGEFTSVEFTE 320

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BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: Q9SKW9_ARATH (F5J5.1 n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SKW9_ARATH)

HSP 1 Score: 70.9 bits (172), Expect = 4.870e-12
Identity = 37/106 (34.91%), Postives = 60/106 (56.60%), Query Frame = 0

Query:    1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSEGFQ 106
            C  C++G ++K    ++T++        + +DL GP   +SL G +Y L +VDD SRFTW+R L++K  AA++ +          G  +  IR D GGE+Q+E F+
Sbjct:  723 CKTCSQGKQVKVQQKRATHIGTTSVLELVHMDLMGPVQTESLSGKKYILVLVDDYSRFTWVRFLREKFEAAESFKILALQLQTEKGNLVQ-IRSDHGGEFQNEEFE 827

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BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: A0A1J3FE06_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3FE06_NOCCA)

HSP 1 Score: 68.2 bits (165), Expect = 5.250e-12
Identity = 34/103 (33.01%), Postives = 55/103 (53.40%), Query Frame = 0

Query:    1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSE 103
            C  C +G +I+    K  +V +      + +DL GP  V+S+GG  Y   +VDD SR+TW+R ++ KS+   + + W    +   G  +  IR D G E+Q+E
Sbjct:   51 CAPCNQGKQIRVQHKKVPDVQSESVLDLVHMDLMGPMQVESIGGKRYVFVLVDDYSRYTWVRFIRDKSDTMNSFKIWALQVITEKGS-LKRIRSDHGREFQNE 152

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BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: A0A6D2KI90_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KI90_9BRAS)

HSP 1 Score: 68.9 bits (167), Expect = 2.230e-11
Identity = 34/107 (31.78%), Postives = 58/107 (54.21%), Query Frame = 0

Query:    1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSEGFQD 107
            C  C +G ++K    K  +V ++     + +D  GP  V+S+ G  Y   +VDD SR+TW+R ++ KS+   + + W   +V+     I  IR D GGE+Q+E  ++
Sbjct:  107 CGPCNQGKQVKVQHKKVPDVQSKSALDLVHMDFMGPMQVESIAGKRYVFVLVDDYSRYTWVRFIRDKSDTMASFKIWA-LQVINEKGSIKRIRSDHGGEFQNEAMKN 212

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
UPI000CED088F	3.260e-14	35.92	uncharacterized protein LOC112084350 n=1 Tax=Eutre...	[more]
UPI000CED7C72	4.510e-14	35.92	uncharacterized protein LOC112089184 n=1 Tax=Eutre...	[more]
A0A151SK87_CAJCA	8.550e-14	37.74	Retrovirus-related Pol polyprotein from transposon...	[more]
UPI000CECEE9C	1.150e-13	34.95	uncharacterized protein LOC112086523 n=1 Tax=Eutre...	[more]
A0A6J0M3H4_RAPSA	5.240e-13	34.95	uncharacterized protein LOC108838558 n=1 Tax=Rapha...	[more]
A0A6D2HW89_9BRAS	1.540e-12	34.95	Integrase catalytic domain-containing protein n=1 ...	[more]
Q60DG5_ORYSJ	4.810e-12	36.45	Putative polyprotein n=3 Tax=Oryza sativa subsp. j...	[more]
Q9SKW9_ARATH	4.870e-12	34.91	F5J5.1 n=1 Tax=Arabidopsis thaliana TaxID=3702 Rep...	[more]
A0A1J3FE06_NOCCA	5.250e-12	33.01	Retrovirus-related Pol polyprotein from transposon...	[more]
A0A6D2KI90_9BRAS	2.230e-11	31.78	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 19..107 e-value: 1.9E-12 score: 48.9
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 21..107 score: 9.58
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 20..106

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig10280	contig	C-tenellus_contig10280:945..1265 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig10280.2.1	mRNA_C-tenellus_contig10280.2.1	Choristocarpus tenellus KU2346	mRNA	C-tenellus_contig10280 945..1265 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-tenellus_contig10280.2.1 ID=prot_C-tenellus_contig10280.2.1|Name=mRNA_C-tenellus_contig10280.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=107bp
CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALA
IVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEW
QSEGFQD

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf