mRNA_C-tenellus_contig10280.2.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: UPI000CED088F (uncharacterized protein LOC112084350 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=UPI000CED088F) HSP 1 Score: 77.0 bits (188), Expect = 3.260e-14 Identity = 37/103 (35.92%), Postives = 61/103 (59.22%), Query Frame = 1 Query: 1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSE 309 C C +G ++K + +V ++ P + +DL GP +SLGG +Y +VDD +RFTW+R L++KS+ A + R W +++ I +R D GGE+Q+E Sbjct: 698 CGACNQGKQVKVQHKRVPDVKSKAPLDLVHMDLMGPVQTESLGGKKYVFVLVDDFTRFTWVRFLREKSDTADSFRIWA-LQLMNERGSIKRVRSDHGGEFQNE 799
BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: UPI000CED7C72 (uncharacterized protein LOC112089184 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=UPI000CED7C72) HSP 1 Score: 76.6 bits (187), Expect = 4.510e-14 Identity = 37/103 (35.92%), Postives = 60/103 (58.25%), Query Frame = 1 Query: 1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSE 309 C C +G ++K + +V ++ P + +DL GP +SLGG +Y +VDD +RFTW+R L++KS+ A + R W + + I +R D GGE+Q+E Sbjct: 696 CGACNQGKQVKVQHKRVPDVQSKAPLDLVHMDLMGPVQTESLGGKKYVFVLVDDFTRFTWVRFLREKSDTADSFRIWA-LQFMNERSSIKRVRSDHGGEFQNE 797
BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: A0A151SK87_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SK87_CAJCA) HSP 1 Score: 75.9 bits (185), Expect = 8.550e-14 Identity = 40/106 (37.74%), Postives = 54/106 (50.94%), Query Frame = 1 Query: 1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSEGFQ 318 C C KG + + + P + +DL GP KSLGG YAL ++DD SRFTW+ + K NA KA R + +I +R D GGE+Q+E FQ Sbjct: 686 CDACQKGKQTRASFKSKKVMSTSRPLELLHMDLFGPSRTKSLGGNTYALVLIDDYSRFTWVAFISHKDNAFKAFRIISKRIQNEKDLKIKSLRSDHGGEFQNESFQ 791
BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: UPI000CECEE9C (uncharacterized protein LOC112086523 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=UPI000CECEE9C) HSP 1 Score: 75.5 bits (184), Expect = 1.150e-13 Identity = 36/103 (34.95%), Postives = 61/103 (59.22%), Query Frame = 1 Query: 1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSE 309 C C +G ++K + +V ++ P + +DL GP +SLGG +Y +VDD +RFTW+R L++KS+ A + R W +++ I +R D GGE+Q++ Sbjct: 679 CGACNQGKQVKVQHKRVPDVQSKAPLDLVHMDLMGPVQTESLGGKKYVFVLVDDFTRFTWVRFLREKSDTADSFRIWA-LQLMNERGSIKRVRSDHGGEFQNK 780
BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: A0A6J0M3H4_RAPSA (uncharacterized protein LOC108838558 n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0M3H4_RAPSA) HSP 1 Score: 73.6 bits (179), Expect = 5.240e-13 Identity = 36/103 (34.95%), Postives = 58/103 (56.31%), Query Frame = 1 Query: 1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSE 309 C C +G +++ +V A+ P + +DL GP +S+GG Y +VDD +RFTW+R L++KS A K+ + W + G I IR D GGE++++ Sbjct: 511 CGACNEGKQVRIQHKNVPDVQAKAPLDLVHMDLMGPMQTESIGGKRYVFVLVDDYTRFTWVRFLREKSEAPKSFKIWALQLINEKGG-IKKIRSDHGGEFENK 612
BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: A0A6D2HW89_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HW89_9BRAS) HSP 1 Score: 71.2 bits (173), Expect = 1.540e-12 Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 1 Query: 1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSE 309 C C +G +IK K +V ++ + +DL GP V+S+GG Y +VDD SR+TW+R ++ KS+ + + W + G + IR D GGE+Q+E Sbjct: 124 CGPCNQGKQIKVQHKKVADVQSKTVLDLVHMDLMGPMQVESIGGKRYVFVLVDDYSRYTWVRFIRDKSDTMASFKIWALQVITEKGS-LKRIRSDHGGEFQNE 225
BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: Q60DG5_ORYSJ (Putative polyprotein n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q60DG5_ORYSJ) HSP 1 Score: 70.9 bits (172), Expect = 4.810e-12 Identity = 39/107 (36.45%), Postives = 57/107 (53.27%), Query Frame = 1 Query: 1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSEGFQD 321 C GC G + + P A+ + DL GP + GG +Y L +VDD+SRF WIRLL K AA A++++ + SGR++ +R D GGE+ S F + Sbjct: 214 CDGCLAGKQRRVPFPDKARFRAQDALELVHGDLCGPIAPATPGGRKYFLLLVDDMSRFMWIRLLSGKHEAAAAIKQFKAGVEMESGRKLRALRTDRGGEFTSVEFTE 320
BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: Q9SKW9_ARATH (F5J5.1 n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SKW9_ARATH) HSP 1 Score: 70.9 bits (172), Expect = 4.870e-12 Identity = 37/106 (34.91%), Postives = 60/106 (56.60%), Query Frame = 1 Query: 1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSEGFQ 318 C C++G ++K ++T++ + +DL GP +SL G +Y L +VDD SRFTW+R L++K AA++ + G + IR D GGE+Q+E F+ Sbjct: 723 CKTCSQGKQVKVQQKRATHIGTTSVLELVHMDLMGPVQTESLSGKKYILVLVDDYSRFTWVRFLREKFEAAESFKILALQLQTEKGNLVQ-IRSDHGGEFQNEEFE 827
BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: A0A1J3FE06_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3FE06_NOCCA) HSP 1 Score: 68.2 bits (165), Expect = 5.250e-12 Identity = 34/103 (33.01%), Postives = 55/103 (53.40%), Query Frame = 1 Query: 1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSE 309 C C +G +I+ K +V + + +DL GP V+S+GG Y +VDD SR+TW+R ++ KS+ + + W + G + IR D G E+Q+E Sbjct: 51 CAPCNQGKQIRVQHKKVPDVQSESVLDLVHMDLMGPMQVESIGGKRYVFVLVDDYSRYTWVRFIRDKSDTMNSFKIWALQVITEKGS-LKRIRSDHGREFQNE 152
BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: A0A6D2KI90_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KI90_9BRAS) HSP 1 Score: 68.9 bits (167), Expect = 2.230e-11 Identity = 34/107 (31.78%), Postives = 58/107 (54.21%), Query Frame = 1 Query: 1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSEGFQD 321 C C +G ++K K +V ++ + +D GP V+S+ G Y +VDD SR+TW+R ++ KS+ + + W +V+ I IR D GGE+Q+E ++ Sbjct: 107 CGPCNQGKQVKVQHKKVPDVQSKSALDLVHMDFMGPMQVESIAGKRYVFVLVDDYSRYTWVRFIRDKSDTMASFKIWA-LQVINEKGSIKRIRSDHGGEFQNEAMKN 212 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10280.2.1 >prot_C-tenellus_contig10280.2.1 ID=prot_C-tenellus_contig10280.2.1|Name=mRNA_C-tenellus_contig10280.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=107bp CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAback to top mRNA from alignment at C-tenellus_contig10280:945..1265- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig10280.2.1 ID=mRNA_C-tenellus_contig10280.2.1|Name=mRNA_C-tenellus_contig10280.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=321bp|location=Sequence derived from alignment at C-tenellus_contig10280:945..1265- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig10280:945..1265- >mRNA_C-tenellus_contig10280.2.1 ID=mRNA_C-tenellus_contig10280.2.1|Name=mRNA_C-tenellus_contig10280.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=321bp|location=Sequence derived from alignment at C-tenellus_contig10280:945..1265- (Choristocarpus tenellus KU2346)back to top |