mRNA_C-tenellus_contig10280.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10280.2.1
Unique NamemRNA_C-tenellus_contig10280.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: UPI000CED088F (uncharacterized protein LOC112084350 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=UPI000CED088F)

HSP 1 Score: 77.0 bits (188), Expect = 3.260e-14
Identity = 37/103 (35.92%), Postives = 61/103 (59.22%), Query Frame = 1
Query:    1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSE 309
            C  C +G ++K    +  +V ++ P   + +DL GP   +SLGG +Y   +VDD +RFTW+R L++KS+ A + R W   +++     I  +R D GGE+Q+E
Sbjct:  698 CGACNQGKQVKVQHKRVPDVKSKAPLDLVHMDLMGPVQTESLGGKKYVFVLVDDFTRFTWVRFLREKSDTADSFRIWA-LQLMNERGSIKRVRSDHGGEFQNE 799          
BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: UPI000CED7C72 (uncharacterized protein LOC112089184 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=UPI000CED7C72)

HSP 1 Score: 76.6 bits (187), Expect = 4.510e-14
Identity = 37/103 (35.92%), Postives = 60/103 (58.25%), Query Frame = 1
Query:    1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSE 309
            C  C +G ++K    +  +V ++ P   + +DL GP   +SLGG +Y   +VDD +RFTW+R L++KS+ A + R W   + +     I  +R D GGE+Q+E
Sbjct:  696 CGACNQGKQVKVQHKRVPDVQSKAPLDLVHMDLMGPVQTESLGGKKYVFVLVDDFTRFTWVRFLREKSDTADSFRIWA-LQFMNERSSIKRVRSDHGGEFQNE 797          
BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: A0A151SK87_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SK87_CAJCA)

HSP 1 Score: 75.9 bits (185), Expect = 8.550e-14
Identity = 40/106 (37.74%), Postives = 54/106 (50.94%), Query Frame = 1
Query:    1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSEGFQ 318
            C  C KG + +        +    P   + +DL GP   KSLGG  YAL ++DD SRFTW+  +  K NA KA R   +        +I  +R D GGE+Q+E FQ
Sbjct:  686 CDACQKGKQTRASFKSKKVMSTSRPLELLHMDLFGPSRTKSLGGNTYALVLIDDYSRFTWVAFISHKDNAFKAFRIISKRIQNEKDLKIKSLRSDHGGEFQNESFQ 791          
BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: UPI000CECEE9C (uncharacterized protein LOC112086523 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=UPI000CECEE9C)

HSP 1 Score: 75.5 bits (184), Expect = 1.150e-13
Identity = 36/103 (34.95%), Postives = 61/103 (59.22%), Query Frame = 1
Query:    1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSE 309
            C  C +G ++K    +  +V ++ P   + +DL GP   +SLGG +Y   +VDD +RFTW+R L++KS+ A + R W   +++     I  +R D GGE+Q++
Sbjct:  679 CGACNQGKQVKVQHKRVPDVQSKAPLDLVHMDLMGPVQTESLGGKKYVFVLVDDFTRFTWVRFLREKSDTADSFRIWA-LQLMNERGSIKRVRSDHGGEFQNK 780          
BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: A0A6J0M3H4_RAPSA (uncharacterized protein LOC108838558 n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0M3H4_RAPSA)

HSP 1 Score: 73.6 bits (179), Expect = 5.240e-13
Identity = 36/103 (34.95%), Postives = 58/103 (56.31%), Query Frame = 1
Query:    1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSE 309
            C  C +G +++       +V A+ P   + +DL GP   +S+GG  Y   +VDD +RFTW+R L++KS A K+ + W    +   G  I  IR D GGE++++
Sbjct:  511 CGACNEGKQVRIQHKNVPDVQAKAPLDLVHMDLMGPMQTESIGGKRYVFVLVDDYTRFTWVRFLREKSEAPKSFKIWALQLINEKGG-IKKIRSDHGGEFENK 612          
BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: A0A6D2HW89_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HW89_9BRAS)

HSP 1 Score: 71.2 bits (173), Expect = 1.540e-12
Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 1
Query:    1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSE 309
            C  C +G +IK    K  +V ++     + +DL GP  V+S+GG  Y   +VDD SR+TW+R ++ KS+   + + W    +   G  +  IR D GGE+Q+E
Sbjct:  124 CGPCNQGKQIKVQHKKVADVQSKTVLDLVHMDLMGPMQVESIGGKRYVFVLVDDYSRYTWVRFIRDKSDTMASFKIWALQVITEKGS-LKRIRSDHGGEFQNE 225          
BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: Q60DG5_ORYSJ (Putative polyprotein n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q60DG5_ORYSJ)

HSP 1 Score: 70.9 bits (172), Expect = 4.810e-12
Identity = 39/107 (36.45%), Postives = 57/107 (53.27%), Query Frame = 1
Query:    1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSEGFQD 321
            C GC  G + +   P      A+     +  DL GP    + GG +Y L +VDD+SRF WIRLL  K  AA A++++     + SGR++  +R D GGE+ S  F +
Sbjct:  214 CDGCLAGKQRRVPFPDKARFRAQDALELVHGDLCGPIAPATPGGRKYFLLLVDDMSRFMWIRLLSGKHEAAAAIKQFKAGVEMESGRKLRALRTDRGGEFTSVEFTE 320          
BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: Q9SKW9_ARATH (F5J5.1 n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SKW9_ARATH)

HSP 1 Score: 70.9 bits (172), Expect = 4.870e-12
Identity = 37/106 (34.91%), Postives = 60/106 (56.60%), Query Frame = 1
Query:    1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSEGFQ 318
            C  C++G ++K    ++T++        + +DL GP   +SL G +Y L +VDD SRFTW+R L++K  AA++ +          G  +  IR D GGE+Q+E F+
Sbjct:  723 CKTCSQGKQVKVQQKRATHIGTTSVLELVHMDLMGPVQTESLSGKKYILVLVDDYSRFTWVRFLREKFEAAESFKILALQLQTEKGNLVQ-IRSDHGGEFQNEEFE 827          
BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: A0A1J3FE06_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3FE06_NOCCA)

HSP 1 Score: 68.2 bits (165), Expect = 5.250e-12
Identity = 34/103 (33.01%), Postives = 55/103 (53.40%), Query Frame = 1
Query:    1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSE 309
            C  C +G +I+    K  +V +      + +DL GP  V+S+GG  Y   +VDD SR+TW+R ++ KS+   + + W    +   G  +  IR D G E+Q+E
Sbjct:   51 CAPCNQGKQIRVQHKKVPDVQSESVLDLVHMDLMGPMQVESIGGKRYVFVLVDDYSRYTWVRFIRDKSDTMNSFKIWALQVITEKGS-LKRIRSDHGREFQNE 152          
BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Match: A0A6D2KI90_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KI90_9BRAS)

HSP 1 Score: 68.9 bits (167), Expect = 2.230e-11
Identity = 34/107 (31.78%), Postives = 58/107 (54.21%), Query Frame = 1
Query:    1 CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALAIVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEWQSEGFQD 321
            C  C +G ++K    K  +V ++     + +D  GP  V+S+ G  Y   +VDD SR+TW+R ++ KS+   + + W   +V+     I  IR D GGE+Q+E  ++
Sbjct:  107 CGPCNQGKQVKVQHKKVPDVQSKSALDLVHMDFMGPMQVESIAGKRYVFVLVDDYSRYTWVRFIRDKSDTMASFKIWA-LQVINEKGSIKRIRSDHGGEFQNEAMKN 212          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10280.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000CED088F3.260e-1435.92uncharacterized protein LOC112084350 n=1 Tax=Eutre... [more]
UPI000CED7C724.510e-1435.92uncharacterized protein LOC112089184 n=1 Tax=Eutre... [more]
A0A151SK87_CAJCA8.550e-1437.74Retrovirus-related Pol polyprotein from transposon... [more]
UPI000CECEE9C1.150e-1334.95uncharacterized protein LOC112086523 n=1 Tax=Eutre... [more]
A0A6J0M3H4_RAPSA5.240e-1334.95uncharacterized protein LOC108838558 n=1 Tax=Rapha... [more]
A0A6D2HW89_9BRAS1.540e-1234.95Integrase catalytic domain-containing protein n=1 ... [more]
Q60DG5_ORYSJ4.810e-1236.45Putative polyprotein n=3 Tax=Oryza sativa subsp. j... [more]
Q9SKW9_ARATH4.870e-1234.91F5J5.1 n=1 Tax=Arabidopsis thaliana TaxID=3702 Rep... [more]
A0A1J3FE06_NOCCA5.250e-1233.01Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2KI90_9BRAS2.230e-1131.78Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10280contigC-tenellus_contig10280:945..1265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4565.Traes_3B_D5F0C4EDC.1
PFAMsgag_pre-integrs,rve
Model size321
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.98e-13
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M2QC@4447|Liliopsida,3IMWS@38820|Poales
DescriptionGAG-pre-integrase domain
Cds size321
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789124.4604146-CDS-C-tenellus_contig10280:944..12651680789124.4604146-CDS-C-tenellus_contig10280:944..1265Choristocarpus tenellus KU2346CDSC-tenellus_contig10280 945..1265 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10280.2.1prot_C-tenellus_contig10280.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10280 945..1265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10280.2.1

>prot_C-tenellus_contig10280.2.1 ID=prot_C-tenellus_contig10280.2.1|Name=mRNA_C-tenellus_contig10280.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=107bp
CIGCTKGIRIKDHVPKSTNVCARGPFTRISIDLTGPKTVKSLGGAEYALA
IVDDVSRFTWIRLLQKKSNAAKALRRWFRAEVLPSGRRIHYIRHDPGGEW
QSEGFQD
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mRNA from alignment at C-tenellus_contig10280:945..1265-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10280.2.1 ID=mRNA_C-tenellus_contig10280.2.1|Name=mRNA_C-tenellus_contig10280.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=321bp|location=Sequence derived from alignment at C-tenellus_contig10280:945..1265- (Choristocarpus tenellus KU2346)
TGCATTGGATGCACAAAAGGGATTAGGATAAAAGATCACGTCCCCAAGTC CACCAATGTATGCGCTAGGGGACCCTTCACTCGCATTTCTATTGACCTTA CAGGACCCAAGACAGTTAAGTCCCTCGGTGGGGCTGAGTACGCCCTGGCA ATTGTCGATGATGTGTCTCGCTTCACATGGATACGACTGCTCCAGAAGAA GAGTAATGCTGCCAAGGCCCTTAGACGATGGTTCAGGGCTGAGGTACTCC CCAGTGGGCGGCGAATTCACTACATCCGACATGACCCAGGGGGTGAGTGG CAGAGTGAGGGATTCCAGGAT
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Coding sequence (CDS) from alignment at C-tenellus_contig10280:945..1265-

>mRNA_C-tenellus_contig10280.2.1 ID=mRNA_C-tenellus_contig10280.2.1|Name=mRNA_C-tenellus_contig10280.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=321bp|location=Sequence derived from alignment at C-tenellus_contig10280:945..1265- (Choristocarpus tenellus KU2346)
TGCATTGGATGCACAAAAGGGATTAGGATAAAAGATCACGTCCCCAAGTC
CACCAATGTATGCGCTAGGGGACCCTTCACTCGCATTTCTATTGACCTTA
CAGGACCCAAGACAGTTAAGTCCCTCGGTGGGGCTGAGTACGCCCTGGCA
ATTGTCGATGATGTGTCTCGCTTCACATGGATACGACTGCTCCAGAAGAA
GAGTAATGCTGCCAAGGCCCTTAGACGATGGTTCAGGGCTGAGGTACTCC
CCAGTGGGCGGCGAATTCACTACATCCGACATGACCCAGGGGGTGAGTGG
CAGAGTGAGGGATTCCAGGAT
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