prot_C-tenellus_contig10214.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-tenellus_contig10214.1.1
Unique Name	prot_C-tenellus_contig10214.1.1
Type	polypeptide
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length	195

Homology

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BLAST of mRNA_C-tenellus_contig10214.1.1 vs. uniprot
Match: D7FQQ9_ECTSI (C-type lectin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQQ9_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 7.480e-38
Identity = 73/177 (41.24%), Postives = 104/177 (58.76%), Query Frame = 0

Query:   15 DLSSVVTITFLGSGVPFDCSRLTTYGSWGEAENWVAGVIPAESDDVVFPVDSGLVVMSTNVTVSTLLMGGGALVTHTSTCPPGWTPAPGELTVNSTLDFAMYNRRMKCWRVFGASKNWKSANEHCASEAASALFG---GGAFSGRLAVIQSIHENQWASRLCRADLANRDCWIGIVQ 188
            +L + V I  +GSGV   C+RL+T G W +  NW  GV+P+ +D+V  P D+G VV++ +  + TL + GGALVTH STC PGWTPAPG     ++  F       KC+R F  + +W +A   CAS  +    G   GG+  G L  +Q + EN W +R+CR D   RDCW+G+ +
Sbjct:  102 NLVNSVDIDVVGSGVQHGCARLSTLGYWEDELNWDTGVVPSSTDEVTIPTDAGFVVLTADTAIDTLRVNGGALVTHDSTCLPGWTPAPG----GTSSSFGS----KKCYRFFDHASSWAAAQSACASAVSQLQPGPARGGSLRGALVTVQGLEENNWVARMCRGDSLERDCWVGMTR 270

[Close]

BLAST of mRNA_C-tenellus_contig10214.1.1 vs. uniprot
Match: A0A6H5JX22_9PHAE (C-type lectin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX22_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.320e-25
Identity = 57/138 (41.30%), Postives = 78/138 (56.52%), Query Frame = 0

Query:   54 PAESDDVVFPVDSGLVVMSTNVTVSTLLMGGGALVTHTSTCPPGWTPAPGELTVNSTLDFAMYNRRMKCWRVFGASKNWKSANEHCA---SEAASALFGGGAFSGRLAVIQSIHENQWASRLCRADLANRDCWIGIVQ 188
            P  S  V  P D+G VV++ +  + TL + GGALVTH STC PGWTPAPG     ++  F       KC+R F  + +W +A   CA   S+  + L  GGA  G L  +Q + EN W +R+CR D   RDCW+G+ +
Sbjct:   11 PNHSRQVTIPTDAGFVVLTADTAIDTLRINGGALVTHDSTCLPGWTPAPG----GTSSSFGS----KKCYRFFDRASSWPAAQSACARAVSQLQAGLSRGGALRGALVTVQGLGENNWVARMCRGDSQERDCWVGMTR 140

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig10214.1.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig10214.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FQQ9_ECTSI	7.480e-38	41.24	C-type lectin domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JX22_9PHAE	1.320e-25	41.30	C-type lectin domain-containing protein n=1 Tax=Ec...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016186	C-type lectin-like/link domain superfamily	GENE3D	3.10.100.10		coord: 73..194 e-value: 8.3E-10 score: 40.6
None	No IPR available	CDD	cd00037	CLECT	coord: 121..186 e-value: 1.28743E-4 score: 37.9846
IPR016187	C-type lectin fold	SUPERFAMILY	56436	C-type lectin-like	coord: 85..188

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig10214	contig	C-tenellus_contig10214:2086..2880 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig10214.1.1	mRNA_C-tenellus_contig10214.1.1	Choristocarpus tenellus KU2346	mRNA	C-tenellus_contig10214 1247..2887 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-tenellus_contig10214.1.1 ID=prot_C-tenellus_contig10214.1.1|Name=mRNA_C-tenellus_contig10214.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=195bp
MGTRTKSKLQIPVWDLSSVVTITFLGSGVPFDCSRLTTYGSWGEAENWVA
GVIPAESDDVVFPVDSGLVVMSTNVTVSTLLMGGGALVTHTSTCPPGWTP
APGELTVNSTLDFAMYNRRMKCWRVFGASKNWKSANEHCASEAASALFGG
GAFSGRLAVIQSIHENQWASRLCRADLANRDCWIGIVQEDHRSW*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR016186	C-type_lectin-like/link_sf
IPR016187	CTDL_fold