mRNA_C-tenellus_contig10214.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10214.1.1
Unique NamemRNA_C-tenellus_contig10214.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10214.1.1 vs. uniprot
Match: D7FQQ9_ECTSI (C-type lectin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQQ9_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 6.630e-37
Identity = 88/245 (35.92%), Postives = 126/245 (51.43%), Query Frame = 2 
Query:   50 DLSSVVTITFLGSGVPFDCSRLTTYGSWGEAENWVAGVIPAESDDVVFPVDSGLVVMSTNVTVSTLLMGGGALVTHTSTCPPGWTPAPGELTVNSTLDFAMYNRRMKCWRVFGASKNWKSANEHCASEAASALFG---GGAFSGRLAVIQSIHENQWASRLCRADLANRDCWIGIVQE----------DHRSW**GWGKL*F*VDRSR-KCWAHWWRDKISFLGSTRTQQREAFEGRRRLCADEG 742
            +L + V I  +GSGV   C+RL+T G W +  NW  GV+P+ +D+V  P D+G VV++ +  + TL + GGALVTH STC PGWTPAPG     ++  F       KC+R F  + +W +A   CAS  +    G   GG+  G L  +Q + EN W +R+CR D   RDCW+G+ +           D   W     +L      SR + WA   R+   F      +   A +G R+  AD+G
Sbjct:  102 NLVNSVDIDVVGSGVQHGCARLSTLGYWEDELNWDTGVVPSSTDEVTIPTDAGFVVLTADTAIDTLRVNGGALVTHDSTCLPGWTPAPG----GTSSSFGS----KKCYRFFDHASSWAAAQSACASAVSQLQPGPARGGSLRGALVTVQGLEENNWVARMCRGDSLERDCWVGMTRSYRGAGRIETGDDLEW----AELENVAGESRYRSWAT--REPSDFENDEAGEHCVATQGSRKRAADQG 332
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BLAST of mRNA_C-tenellus_contig10214.1.1 vs. uniprot
Match: A0A6H5JX22_9PHAE (C-type lectin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX22_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 4.730e-29
Identity = 60/126 (47.62%), Postives = 85/126 (67.46%), Query Frame = 3 
Query:  561 GLSRRIIGVGDEDGGNYDFEWTGPESAGPIGGETRYRSWARREPNSVRHSKGGEDCVLMRGTRWRPMDQVEGKWNDADCTSEKPFVCQAFGFTTPYLLTVSSLLHIAGGYLLGVGTVNSKSITRVS 938
            G++R   G G  + G+ D EW   E+   + GE RYRSWA REP+   + + GE+CV ++G+R R  DQ E +W D  C +EKPFVCQAFG +TP+ L+VS+ L +AGGY++G GTV S ++ +VS
Sbjct:  137 GMTRSYRGAGRIETGD-DLEWAELEN---VAGELRYRSWATREPSDFENDEAGENCVAIQGSRKRAADQGEARWYDDGCEAEKPFVCQAFGISTPFSLSVSTELEMAGGYIVGAGTVTSSTLAKVS 258
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BLAST of mRNA_C-tenellus_contig10214.1.1 vs. uniprot
Match: A0A7S3HNV4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNV4_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 6.000e-9
Identity = 44/129 (34.11%), Postives = 57/129 (44.19%), Query Frame = 3 
Query:  579 IGVGDEDGGNYDFEWTGPESAG----PIGGETRYRSWARREPNSVRHSKG-----GEDCVLMRGTRWRPMDQVEGKWNDADCTSEKPFVCQAFGFTTPYLLTVSSLLHIAGGYLLGVGTVNSKSITRVS 938
            IG+ D++G   DF W  P + G    P      +  W R EPN+   S+G     GE C  +   +  P+   +G WND  C   KPFVCQ FG T  Y LTV     +  G L G         T +S
Sbjct:  348 IGLWDQNGSG-DFRWISPVAIGTPTDPDLDVGMFLDWRRDEPNNHTISEGLETPGGERCAALVPWQEDPLLLEQGSWNDDSCNVAKPFVCQIFGNTARYTLTVHGHTTLTSGRLEGGIIATGAGATDIS 475
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10214.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQQ9_ECTSI6.630e-3735.92C-type lectin domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JX22_9PHAE4.730e-2947.62C-type lectin domain-containing protein n=1 Tax=Ec... [more]
A0A7S3HNV4_9STRA6.000e-934.11Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10214contigC-tenellus_contig10214:1247..2887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size938
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionC-type lectin-like
Ec32 orthologEc-01_000170.3
Cds size585
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789121.1011705-UTR-C-tenellus_contig10214:1246..14711680789121.1011705-UTR-C-tenellus_contig10214:1246..1471Choristocarpus tenellus KU2346UTRC-tenellus_contig10214 1247..1471 -
1680789121.129796-UTR-C-tenellus_contig10214:1964..20851680789121.129796-UTR-C-tenellus_contig10214:1964..2085Choristocarpus tenellus KU2346UTRC-tenellus_contig10214 1965..2085 -
1680789121.1578097-UTR-C-tenellus_contig10214:2880..28871680789121.1578097-UTR-C-tenellus_contig10214:2880..2887Choristocarpus tenellus KU2346UTRC-tenellus_contig10214 2881..2887 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789121.1395686-CDS-C-tenellus_contig10214:2085..24931680789121.1395686-CDS-C-tenellus_contig10214:2085..2493Choristocarpus tenellus KU2346CDSC-tenellus_contig10214 2086..2493 -
1680789121.148529-CDS-C-tenellus_contig10214:2703..28801680789121.148529-CDS-C-tenellus_contig10214:2703..2880Choristocarpus tenellus KU2346CDSC-tenellus_contig10214 2704..2880 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10214.1.1prot_C-tenellus_contig10214.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10214 2086..2880 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10214.1.1

>prot_C-tenellus_contig10214.1.1 ID=prot_C-tenellus_contig10214.1.1|Name=mRNA_C-tenellus_contig10214.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=195bp
MGTRTKSKLQIPVWDLSSVVTITFLGSGVPFDCSRLTTYGSWGEAENWVA
GVIPAESDDVVFPVDSGLVVMSTNVTVSTLLMGGGALVTHTSTCPPGWTP
APGELTVNSTLDFAMYNRRMKCWRVFGASKNWKSANEHCASEAASALFGG
GAFSGRLAVIQSIHENQWASRLCRADLANRDCWIGIVQEDHRSW*
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mRNA from alignment at C-tenellus_contig10214:1247..2887-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10214.1.1 ID=mRNA_C-tenellus_contig10214.1.1|Name=mRNA_C-tenellus_contig10214.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1641bp|location=Sequence derived from alignment at C-tenellus_contig10214:1247..2887- (Choristocarpus tenellus KU2346)
TACAATTATGGGTACACGTACCAAATCAAAGCTGCAAATACCAGTTTGGG
ATCTTTCTTCTGTGGTTACTATAACATTTCTTGGGTCTGGGGTGCCATTT
GACTGCTCAAGGCTGACGACGTATGGCTCATGGGGTGAGGCTGAAAACTG
GGTGGCAGGTGTAATTCCAGCGGAGTCTGATGATGTGAGGTTATGCACGA
TTGATCTATCAATAACGTGTCGTTACATGGTGAGAAGCTTGAGCTCTTCT
TCGTAGCTTCCATTAGTAGATGAGGTCTTATAATTATGTAGGATCTAAGT
CTTGGAAAGATCCTATGAGAACCTGTGCGAGGCTTTACAGGAAGAAATTA
ACTTATTCGTAATATCGAATATTGTAACTGTGTGTGTACTTCAGGTAGTT
TTTCCTGTGGACAGCGGCCTGGTGGTCATGTCAACAAATGTCACTGTATC
CACCTTGCTCATGGGCGGTGGAGCATTAGTTACGCATACATCCACTTGTC
CACCTGGTTGGACCCCTGCACCTGGGGAACTCACTGTCAATAGTACTCTT
GACTTTGCTATGTACAATCGACGAATGAAGTGTTGGCGTGTCTTTGGCGC
AAGTAAGAACTGGAAGTCTGCGAATGAACATTGTGCCAGTGAAGCAGCAT
CAGCACTGTTTGGAGGTGGTGCATTTTCTGGCCGATTGGCAGTTATCCAA
AGCATTCATGAAAACCAATGGGCATCAAGACTTTGCAGGGCAGACCTGGC
GAATAGGGACTGCTGGATAGGGATTGTCCAGGAGGATCATAGGAGTTGGT
GATGAGGATGGGGGAAATTATGATTTTGAGTGGACAGGTCCCGAAAGTGC
TGGGCCCATTGGTGGAGAGACAAGATATCGTTCTTGGGCTCGACGCGAAC
CCAACAGCGTGAGGCATTCGAAGGTGAAATATATTGATTGAATGTCCATA
GCTTGGCTGTCTGCTCCTCGCTCCTGGTCCTAACATGTCTTTTGTCCATG
ATTAGCAATATGACAATCCCTCTGAGTCAAACCACAAAGAATTCAAACCA
TGTTCGTGACGATTTACTAAGTTTGAATTCACATTTCTTGGTAGAAACAA
AGTGTGCATGTATGTGTTGACCTTTGCCTGTAGAGATGTTCAAAGTGTTG
ATCTCTCTTGCTTTATTATATTAGTGATAATATAAGTGTAGTGCTTTGTG
AATAGAATCCATCAGAAATCAACTACGATTTTTATAAGATATATGGGACT
CAAGCAGTTGCATTTTGTCTTTCATGACACACAGGCTCGTCCAAACCATA
TCATATACATATATATATATATATATATTCCCTTTTATGGCCCATATTTG
TGTCATCCATTAGTTGTGTACCAATGATATTCCCATGTATGTTTGGTGTG
GCTGTACTATCAGCAGGGAGGAGAAGATTGTGTGCTGATGAGGGGAACGA
GGTGGCGCCCAATGGATCAGGTAGAAGGGAAGTGGAATGATGCAGACTGC
ACTTCTGAGAAGCCGTTTGTGTGCCAGGCATTCGGGTTCACCACTCCCTA
CTTGCTGACAGTTTCGTCACTGCTTCATATTGCAGGAGGCTACCTTCTTG
GGGTTGGGACTGTGAACAGCAAGAGCATTACCCGTGTGAGT
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Coding sequence (CDS) from alignment at C-tenellus_contig10214:1247..2887-

>mRNA_C-tenellus_contig10214.1.1 ID=mRNA_C-tenellus_contig10214.1.1|Name=mRNA_C-tenellus_contig10214.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=585bp|location=Sequence derived from alignment at C-tenellus_contig10214:1247..2887- (Choristocarpus tenellus KU2346)
ATGGGTACACGTACCAAATCAAAGCTGCAAATACCAGTTTGGGATCTTTC
TTCTGTGGTTACTATAACATTTCTTGGGTCTGGGGTGCCATTTGACTGCT
CAAGGCTGACGACGTATGGCTCATGGGGTGAGGCTGAAAACTGGGTGGCA
GGTGTAATTCCAGCGGAGTCTGATGATGTAGTTTTTCCTGTGGACAGCGG
CCTGGTGGTCATGTCAACAAATGTCACTGTATCCACCTTGCTCATGGGCG
GTGGAGCATTAGTTACGCATACATCCACTTGTCCACCTGGTTGGACCCCT
GCACCTGGGGAACTCACTGTCAATAGTACTCTTGACTTTGCTATGTACAA
TCGACGAATGAAGTGTTGGCGTGTCTTTGGCGCAAGTAAGAACTGGAAGT
CTGCGAATGAACATTGTGCCAGTGAAGCAGCATCAGCACTGTTTGGAGGT
GGTGCATTTTCTGGCCGATTGGCAGTTATCCAAAGCATTCATGAAAACCA
ATGGGCATCAAGACTTTGCAGGGCAGACCTGGCGAATAGGGACTGCTGGA
TAGGGATTGTCCAGGAGGATCATAGGAGTTGGTGA
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