prot_C-tenellus_contig10209.2.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig10209.2.1
Unique Nameprot_C-tenellus_contig10209.2.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length212
Homology
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BLAST of mRNA_C-tenellus_contig10209.2.1 vs. uniprot
Match: A0A6H5JYU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU7_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.160e-13
Identity = 52/135 (38.52%), Postives = 68/135 (50.37%), Query Frame = 0 
Query:    4 SQQNVDRVIGVLATVCTGMILVVIGARAR----TSLSAILRLRIDERPGAKSGRRRSRPSAGKKASYEGDKGDCEDSYHAYVHGSQSGKDVKM----------LVLHTGSCHCGWLTFEVDAPDNLVAMEGPSKV 124
            S + VDRV+GVL   C   +LV +GARA      S + +LRL                 ++ K+ S         D+Y  Y HGS+S    +           LVLH GSCHCG L FEV+AP++L A+EGPSKV
Sbjct:   10 SPKTVDRVLGVLVAACASALLVALGARAGXXXGASFTTLLRLAYQ-----------GSSTSSKRRSSRXXXXXXGDAYFEYAHGSRSTAAARXXXXXXAGRGGLVLHAGSCHCGGLAFEVEAPEHLAAIEGPSKV 133
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BLAST of mRNA_C-tenellus_contig10209.2.1 vs. uniprot
Match: A0A835Z3S2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3S2_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.670e-9
Identity = 49/131 (37.40%), Postives = 70/131 (53.44%), Query Frame = 0 
Query:    1 MPSSQQNVDRVIGVLATVCTGMILVVIGARARTSLSAILRLRIDERPGAKSGRRRSRPSAGKKASY-------EGDKGDCEDSYHAYVHGSQSGKDVKMLVLHTGSCHCGWLTFEVDAPDNLVAMEGPSKV 124
            M S Q   DR+IG L T    ++LV++G   R     + RLR  +    KS      PS G+           +  +G   D+Y+   +GS+S   V  +V+HTGSCHCG +TFEV AP++L A+EG SK+
Sbjct:    1 MTSLQDKNDRIIGALVT---SVVLVIVGLYGRH----LSRLRQGQCLDGKSCEHTCTPSPGRXXXXXXXXXXLQPQEGAQADAYYQXAYGSRSQSGV--MVMHTGSCHCGNMTFEVQAPEHLAAVEGGSKL 122
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10209.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JYU7_9PHAE1.160e-1338.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z3S2_9STRA2.670e-937.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..31
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 32..211
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
IPR011057Mss4-like superfamilySUPERFAMILY51316Mss4-likecoord: 82..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10209contigC-tenellus_contig10209:1160..1795 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10209.2.1mRNA_C-tenellus_contig10209.2.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig10209 612..3723 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig10209.2.1 ID=prot_C-tenellus_contig10209.2.1|Name=mRNA_C-tenellus_contig10209.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=212bp
MPSSQQNVDRVIGVLATVCTGMILVVIGARARTSLSAILRLRIDERPGAK
SGRRRSRPSAGKKASYEGDKGDCEDSYHAYVHGSQSGKDVKMLVLHTGSC
HCGWLTFEVDAPDNLVAMEGPSKVWLDASFCSTCPLPLFYSPLVSRRTFA
IPYQCAHVLYRSNPVLMLCIFDQFTNWICTPLPALVSSTRHTSYLMSIHH
NRTGMNALRSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011057Mss4-like_sf