mRNA_C-tenellus_contig10209.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10209.2.1
Unique NamemRNA_C-tenellus_contig10209.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10209.2.1 vs. uniprot
Match: A0A6H5JYU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU7_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.230e-11
Identity = 52/135 (38.52%), Postives = 68/135 (50.37%), Query Frame = 3 
Query: 1938 SQQNVDRVIGVLATVCTGMILVVIGARAR----TSLSAILRLRIDERPGAKSGRRRSRPSAGKKASYEGDKGDCEDSYHAYVHGSQSGKDVKM----------LVLHTGSCHCGWLTFEVDAPDNLVAMEGPSKV 2300
            S + VDRV+GVL   C   +LV +GARA      S + +LRL                 ++ K+ S         D+Y  Y HGS+S    +           LVLH GSCHCG L FEV+AP++L A+EGPSKV
Sbjct:   10 SPKTVDRVLGVLVAACASALLVALGARAGXXXGASFTTLLRLAYQ-----------GSSTSSKRRSSRXXXXXXGDAYFEYAHGSRSTAAARXXXXXXAGRGGLVLHAGSCHCGGLAFEVEAPEHLAAIEGPSKV 133
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BLAST of mRNA_C-tenellus_contig10209.2.1 vs. uniprot
Match: A0A835Z3S2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3S2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 8.870e-8
Identity = 49/131 (37.40%), Postives = 70/131 (53.44%), Query Frame = 3 
Query: 1929 MPSSQQNVDRVIGVLATVCTGMILVVIGARARTSLSAILRLRIDERPGAKSGRRRSRPSAGKKASY-------EGDKGDCEDSYHAYVHGSQSGKDVKMLVLHTGSCHCGWLTFEVDAPDNLVAMEGPSKV 2300
            M S Q   DR+IG L    T ++LV++G   R     + RLR  +    KS      PS G+           +  +G   D+Y+   +GS+S   V  +V+HTGSCHCG +TFEV AP++L A+EG SK+
Sbjct:    1 MTSLQDKNDRIIGALV---TSVVLVIVGLYGRH----LSRLRQGQCLDGKSCEHTCTPSPGRXXXXXXXXXXLQPQEGAQADAYYQXAYGSRSQSGV--MVMHTGSCHCGNMTFEVQAPEHLAAVEGGSKL 122
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10209.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JYU7_9PHAE1.230e-1138.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z3S2_9STRA8.870e-837.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10209contigC-tenellus_contig10209:612..3723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3112
Hectar predicted targeting categorysignal anchor
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_005150.1
Cds size636
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789120.7286878-UTR-C-tenellus_contig10209:611..11591680789120.7286878-UTR-C-tenellus_contig10209:611..1159Choristocarpus tenellus KU2346UTRC-tenellus_contig10209 612..1159 -
1680789120.7496436-UTR-C-tenellus_contig10209:1795..37231680789120.7496436-UTR-C-tenellus_contig10209:1795..3723Choristocarpus tenellus KU2346UTRC-tenellus_contig10209 1796..3723 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789120.7375932-CDS-C-tenellus_contig10209:1159..17951680789120.7375932-CDS-C-tenellus_contig10209:1159..1795Choristocarpus tenellus KU2346CDSC-tenellus_contig10209 1160..1795 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10209.2.1prot_C-tenellus_contig10209.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10209 1160..1795 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10209.2.1

>prot_C-tenellus_contig10209.2.1 ID=prot_C-tenellus_contig10209.2.1|Name=mRNA_C-tenellus_contig10209.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=212bp
MPSSQQNVDRVIGVLATVCTGMILVVIGARARTSLSAILRLRIDERPGAK
SGRRRSRPSAGKKASYEGDKGDCEDSYHAYVHGSQSGKDVKMLVLHTGSC
HCGWLTFEVDAPDNLVAMEGPSKVWLDASFCSTCPLPLFYSPLVSRRTFA
IPYQCAHVLYRSNPVLMLCIFDQFTNWICTPLPALVSSTRHTSYLMSIHH
NRTGMNALRSS*
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mRNA from alignment at C-tenellus_contig10209:612..3723-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10209.2.1 ID=mRNA_C-tenellus_contig10209.2.1|Name=mRNA_C-tenellus_contig10209.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3112bp|location=Sequence derived from alignment at C-tenellus_contig10209:612..3723- (Choristocarpus tenellus KU2346)
ATTCGAGAGTACTATGCACTCATCGAACAACCAAGGCGGCAACATATATG
TTGGTGGTGCCAACCTGTTAAGGAGAAAGAGGTTACACATGTTCTGAAAA
TCACCTTGCGAATGAGTACGAGACAGTGATCGATTTGATTGTGGCACACA
GAAACAAGCTCAATAATCAAGACAGCATTGAAGGTTGCTCATCTCGCAAA
GGTTTGGAGGGCGTGTGCAATCTCATCCTCGATAATGCTCTTTGGAAGTG
TATGTTTACAATGAACACCTTTGTGTGCGGACGGGGTTGACGGTGGGGGA
TGTTAGTGATTGCCAGTTAGGCGGGATAAGGGTGTATGAGATACACTACA
GCAGCAGACACACACTTTAGCACAAAAGGGACACACTCATATCTCAAGAC
CCTGTGGACTCGCATGAATTTTTTCACAGAACCATAGTGATCCAGAGGGA
CAGCGTTATTCTTGCCCTGTCATTGAACACACCTTGTATCAAGGGGTGAA
GGAATGGAAGATTTTACTAAAAGCTGAAACCTCTTGATGCCTGTGTTGGA
TACCGTTTACAATTTTTCGTATTTTGTTGCGCAGTAGGAGGGCGTGCCTG
AATCCGTTTTATCACTGGTTCCTGTTTTCTGTCTGTTCCCTCTAGAGTAA
CACAACAAATAGAGCTCCAAGCCTTCAACTATTCTACTGCCTACAGGAAG
TATATAGCTTGGCTGAGATGATATTGGTTGACCATGGTATAGTCATGTGG
AAAAGGATCGCCCTCTCTCGATCTCAAACGAACAAGCGAGAGGAGATCGA
GGCACCAGTTCTATCTCTTGCCAAACTCAATTGTCATTCGATATGGAGCG
GTTACGAATGCTTAGTCTATATACAGGGGTACCAAGCAGCTCGTCGTTCG
AGCGGTGGTGTGAGAGAATGGCGGGGGTAAGCCCTTGCTTCAACCAGCAA
GAAAACAACTGCCTTCCCCCCCACTTCATTTATAATTCTGGATGAAAGGA
CAGAGGATGTCATGAATGGAAACCCCAGGTTGCACGTCAGTCTTTGAGGA
AGACACTGGCGGGGATAAAGAGGTATTAATGACAAGGTACAGTGACTGGG
GAAGTGACTGGAAGGCGGCAATGGGCTTCCATATGGGATGAGAAGTGGGA
AGGATCAGTGGTGGAGGTATCCCTCTTTCCGAAGCCCCCGCTTTCCCAGT
TTTCTCCTCTACACAAGCGACATTGCCACCTAGCAATGCCATGGATCTAT
CTATATGCTGAGTTCTGCACCATGAATCCCTAGTGAAGTTATCATTTCCC
TTTTCCTATCTACTGCTTGTTTATATGCACAGCAAAACCCTCTCCTTGAA
ACCTCACCGCCTTGAACATGGGAAGATCTATTTTGAAGTAAGCGGGAATT
TGCACAGAGAAGGGAGACAACAGGGTGCTAGCTGTCAGCTGAAGGGCAGG
CAATGATTTAAATAGTCATCTGTCAAATGTTTCTTCTGTTATCACATGCA
TAGGAGAACTTGGATCATATGTCGTGTGTATTATGTGTCTTAATCAACGC
AAAAAAAAGGTTCGCCGCATGTTGCCGTTTTCCATTTTGGTTTGCCTTAC
TGTGTATTGAGTAGACACACAATGGTAAACATTGAACCTCCTTCCTCAAC
AAGGACCGTGTTCTAACACCTACATGGACCTTGCCTTTTTTAAAAGAAGA
GGAACAAAGAGAGTTTCAGTCGTAGTCCTGAAAGAGCGTATCATGGATGG
TTTTAATGGTCAGGGCAAATTGTGAGTGTCCTGATCCCGGCACCAGGCTG
GGTCAGGAAACAGTAGGATTCCCTGTCCTGAGTTTCCTTCTTGAATCCCT
GGTCCCTGGTGTTCGGTGTCGGAGTAGCGGGCACTCATAGTGTGGTGGGT
CAAATAGGGGCTTGCTCGGCTTACGACTATGCCTTCATCCCAACAGAATG
TGGATAGAGTTATAGGTGTACTGGCAACTGTGTGTACTGGAATGATTCTT
GTTGTGATTGGAGCACGTGCAAGAACCTCTCTCTCCGCTATTCTTCGACT
GAGAATTGATGAACGCCCAGGCGCGAAGTCGGGACGCCGTCGCTCCAGGC
CTTCTGCGGGAAAAAAAGCTTCGTACGAAGGAGATAAAGGGGACTGTGAG
GATTCCTATCACGCCTATGTACATGGGAGTCAGTCTGGAAAGGATGTAAA
GATGTTGGTGCTTCACACTGGAAGTTGTCACTGTGGATGGTTGACCTTTG
AGGTGGATGCACCGGATAACCTCGTAGCTATGGAGGGACCGAGCAAGGTC
TGGTTGGATGCCTCTTTCTGTTCGACTTGCCCCCTTCCTCTCTTCTACTC
TCCTCTCGTTTCACGCCGAACTTTTGCCATCCCTTACCAATGTGCACACG
TTCTTTACAGATCAAATCCGGTACTGATGTTATGTATCTTCGACCAGTTC
ACCAACTGGATATGTACTCCTTTGCCTGCTTTGGTTTCTTCGACTCGTCA
CACGTCCTACTTGATGAGCATTCACCATAACCGTACTGGGATGAATGCGT
TGAGATCCTCTTGATTTTATCATATGCAAGCTAGAAGGGCCATATGGGTT
GCTTTGGAACCCCCATGCTCACATACTACTTTGTACATAGTGCTAAATTT
GAAGGAGGGTAAGAATGGCCACCCCCTACTGTTCCTTACCCCCCTAATCC
CTGCATCAAAGGGCAGTAAATAGATAGCTGTCTGCTAGGAGTCACAATTT
TTTTTCACACAAAGCTGATATGCTGTACGAGTTTGTATCTTTTGGTCATT
TTGTGTGCGTTACTCTACATATATTTAAGGAACCGAGAGAGATTAGACAG
TTGATGGTCCTTGGCAAAGGATACTGGTTGGTTTTCATGTGGCTACGAGC
TACAGAAACTCTTTTTTCCCTTCTTCTACCCCTTCCTTTTTGATTTTGTT
TGTCCTCACCTCATTTCCCTCCTCTTTGTGAATATCCAGTTACGATACCC
ATTCATTACTGTCCCAGCCAAGCGGTTTAGGATGACGTCTAATGACAGCA
ACGGTTCACTATACCTGGTGAAGAGCCAATCTTCTGAGGGGAGGATAGGC
CCAGTCCCGAAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10209:612..3723-

>mRNA_C-tenellus_contig10209.2.1 ID=mRNA_C-tenellus_contig10209.2.1|Name=mRNA_C-tenellus_contig10209.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=636bp|location=Sequence derived from alignment at C-tenellus_contig10209:612..3723- (Choristocarpus tenellus KU2346)
ATGCCTTCATCCCAACAGAATGTGGATAGAGTTATAGGTGTACTGGCAAC
TGTGTGTACTGGAATGATTCTTGTTGTGATTGGAGCACGTGCAAGAACCT
CTCTCTCCGCTATTCTTCGACTGAGAATTGATGAACGCCCAGGCGCGAAG
TCGGGACGCCGTCGCTCCAGGCCTTCTGCGGGAAAAAAAGCTTCGTACGA
AGGAGATAAAGGGGACTGTGAGGATTCCTATCACGCCTATGTACATGGGA
GTCAGTCTGGAAAGGATGTAAAGATGTTGGTGCTTCACACTGGAAGTTGT
CACTGTGGATGGTTGACCTTTGAGGTGGATGCACCGGATAACCTCGTAGC
TATGGAGGGACCGAGCAAGGTCTGGTTGGATGCCTCTTTCTGTTCGACTT
GCCCCCTTCCTCTCTTCTACTCTCCTCTCGTTTCACGCCGAACTTTTGCC
ATCCCTTACCAATGTGCACACGTTCTTTACAGATCAAATCCGGTACTGAT
GTTATGTATCTTCGACCAGTTCACCAACTGGATATGTACTCCTTTGCCTG
CTTTGGTTTCTTCGACTCGTCACACGTCCTACTTGATGAGCATTCACCAT
AACCGTACTGGGATGAATGCGTTGAGATCCTCTTGA
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