prot_C-tenellus_contig10128.1.2 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-tenellus_contig10128.1.2
Unique Name	prot_C-tenellus_contig10128.1.2
Type	polypeptide
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length	219

Homology

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BLAST of mRNA_C-tenellus_contig10128.1.2 vs. uniprot
Match: A0A6H5JEX9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX9_9PHAE)

HSP 1 Score: 317 bits (813), Expect = 9.980e-108
Identity = 151/180 (83.89%), Postives = 164/180 (91.11%), Query Frame = 0

Query:   36 IVLPPPQQPGALASSTVFVGNLSWSTTSDDLRNFMSSVGEVVSAEVQSHADSGRSKGWGLVTYAEPTVAVAAIEQLNNVDFGGRPIHIRLDRKEVEASGGFPIFVGNLPWSTTDEDLQEIFSPYEPYDCHVKTNMAGRSRGFGILRFATPEMGQRAISDMQSYQIEGRPIQVREDREVGG 215
            +V PP     A  SSTVFVGNLSW TTS+DLR FM S+GEVVSAEVQSHADSGRSKGWGLVTYA+P +A AAIEQLNN D GGRPIHIRLDRKEVEASGGFP+FVGNLPWSTTDEDLQ+IF+PYEPYDCHVKTNMAGRSRGFGILRFATPE+GQRAIS+MQ+YQI+ RPIQVREDRE+GG
Sbjct:   16 VVAPPVAAGAAPVSSTVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREIGG 195

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BLAST of mRNA_C-tenellus_contig10128.1.2 vs. uniprot
Match: D8LK87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK87_ECTSI)

HSP 1 Score: 313 bits (803), Expect = 4.190e-104
Identity = 151/185 (81.62%), Postives = 165/185 (89.19%), Query Frame = 0

Query:   31 TAPLPIVLPPPQQPGALASSTVFVGNLSWSTTSDDLRNFMSSVGEVVSAEVQSHADSGRSKGWGLVTYAEPTVAVAAIEQLNNVDFGGRPIHIRLDRKEVEASGGFPIFVGNLPWSTTDEDLQEIFSPYEPYDCHVKTNMAGRSRGFGILRFATPEMGQRAISDMQSYQIEGRPIQVREDREVGG 215
            TA +  V+ P        SSTVFVGNLSW TTS+DLR FM S+GEVVSAEVQSHADSGRSKGWGLVTYA+P +A AAIEQLNN D GGRPIHIRLDRKEVEASGGFP+FVGNLPWSTTDEDLQ+IF+PYEPYDCHVKTNMAGRSRGFGILRFATPE+GQRAIS+MQ+YQI+ RPIQVREDRE+GG
Sbjct:   33 TAGVASVVAPXXXXXXXVSSTVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREIGG 217

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BLAST of mRNA_C-tenellus_contig10128.1.2 vs. uniprot
Match: A0A835ZG94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG94_9STRA)

HSP 1 Score: 250 bits (639), Expect = 3.650e-80
Identity = 115/172 (66.86%), Postives = 142/172 (82.56%), Query Frame = 0

Query:   45 GALASSTVFVGNLSWSTTSDDLRNFMSSVGEVVSAEVQSHADSGRSKGWGLVTYAEPTVAVAAIEQLNNVDFGGRPIHIRLDRKEVEASGGFPIFVGNLPWSTTDEDLQEIFSPYEPYDCHVKTNMAGRSRGFGILRFATPEMGQRAISDMQSYQIEGRPIQVREDREVGGG 216
            G   + TVFVGNL+W+TT+D+LR+FM+SVG V+S+ VQ HADSGRSKGWGLV Y+    A+AAIEQLNN + GGR +H+RLDR  ++ SGGF +FVGNLPWSTT EDLQ +F+ ++PYD HVKTNMAGRSRGF ILRF+ PE GQ+AI+ M  + I+GRPIQVREDR+VGGG
Sbjct:    2 GEAGNRTVFVGNLAWNTTADELRDFMASVGTVLSSAVQCHADSGRSKGWGLVEYSTDGEAMAAIEQLNNAELGGRAVHVRLDRSNIDTSGGFAVFVGNLPWSTTTEDLQTLFAQFQPYDVHVKTNMAGRSRGFAILRFSAPEPGQQAIAAMNGFDIDGRPIQVREDRDVGGG 173

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BLAST of mRNA_C-tenellus_contig10128.1.2 vs. uniprot
Match: A0A835YWJ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWJ3_9STRA)

HSP 1 Score: 237 bits (604), Expect = 7.500e-75
Identity = 111/168 (66.07%), Postives = 132/168 (78.57%), Query Frame = 0

Query:   45 GALASSTVFVGNLSWSTTSDDLRNFMSSVGEVVSAEVQSHADSGRSKGWGLVTYAEPTVAVAAIEQLNNVDFGGRPIHIRLDRKEVEASGGFPIFVGNLPWSTTDEDLQEIFSPYEPYDCHVKTNMAGRSRGFGILRFATPEMGQRAISDMQSYQIEGRPIQVREDRE 212
            G   + TVFVGNLSW+TTS++LR+FM+S GE+VS+EVQ HADSGRSKGWGLV Y+ P  A AAIE LNN D GGR +H+R DR  +E SGGF +FVGNLPWS TD DL  +F+ + P+D HVKTNM GRSRGFGILRF +PE G+ AI  M  ++IEGR IQVREDRE
Sbjct:    2 GEANNRTVFVGNLSWNTTSEELRDFMASQGEIVSSEVQCHADSGRSKGWGLVQYSTPEEATAAIELLNNADLGGRSVHLRFDRTTIETSGGFAVFVGNLPWSVTDLDLTALFAKFNPFDAHVKTNMTGRSRGFGILRFHSPEEGREAIEAMNGFEIEGRHIQVREDRE 169

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BLAST of mRNA_C-tenellus_contig10128.1.2 vs. uniprot
Match: A0A7S2V6P6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6P6_9STRA)

HSP 1 Score: 207 bits (528), Expect = 2.220e-63
Identity = 102/172 (59.30%), Postives = 121/172 (70.35%), Query Frame = 0

Query:   46 ALASSTVFVGNLSWSTTSDDLRNFMSSVGEVVSAEVQSHADSGRSKGWGLVTYAEPTVAVAAIEQLNNVDFGGRPIHIRLDRKEVEASGGFPIFVGNLPWSTTDEDLQEIFSPYEPYDCHVKTNMAGRSRGFGILRFATPEMGQRAISDMQSYQIEGRPIQVREDREVGGGG 217
            A    TVFVGNL WSTT+++L+ FMS  G VVSA+VQ+HADSGRSKGWGLV Y+    A  AI+ LN+     R IH+RLDR  ++ + G  +FVGNLPWSTT E L E+F  YEP+D HVKTNMAGRSRGF ILRF   +    AI+DM  Y +E R IQVREDR V  GG
Sbjct:    2 ATEMKTVFVGNLKWSTTNEELQEFMSQCGNVVSADVQAHADSGRSKGWGLVEYSTAEEAQNAIQLLNSTTLQERQIHVRLDRSNLDETAGVSVFVGNLPWSTTSETLAELFGSYEPFDVHVKTNMAGRSRGFAILRFNNQDQANAAITDMNGYNLEERNIQVREDRGVAEGG 173

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BLAST of mRNA_C-tenellus_contig10128.1.2 vs. uniprot
Match: A0A7S2DGC6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DGC6_9STRA)

HSP 1 Score: 204 bits (520), Expect = 6.190e-62
Identity = 93/174 (53.45%), Postives = 127/174 (72.99%), Query Frame = 0

Query:   42 QQPGALASSTVFVGNLSWSTTSDDLRNFMSSVGEVVSAEVQSHADSGRSKGWGLVTYAEPTVAVAAIEQLNNVDFGGRPIHIRLDRKEVEASGGFPIFVGNLPWSTTDEDLQEIFSPYEPYDCHVKTNMAGRSRGFGILRFATPEMGQRAISDMQSYQIEGRPIQVREDREVGG 215
            ++P + A  T+FVGNLSW+TT+++L  FM++ G V S +VQ+HAD+GRSKGW LVTY         I+Q N  +F GR +++R DR ++E   GFP+FVGNLPWSTT EDL ++F  + P+D HVKT MAGRSRGF ILRF + E+ Q+A + M  +++EGR I+VREDR+ GG
Sbjct:   26 EEPLSGAGCTLFVGNLSWATTNEELSEFMANYGTVASCQVQAHADTGRSKGWALVTYTTAEECTYTIQQTNGQEFNGRNLNVRQDRSQMEELSGFPVFVGNLPWSTTSEDLSDLFRDFGPFDVHVKTTMAGRSRGFAILRFESLEVAQQATAAMNGHELEGRSIEVREDRQTGG 199

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BLAST of mRNA_C-tenellus_contig10128.1.2 vs. uniprot
Match: A0A7S2GAK8_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GAK8_9STRA)

HSP 1 Score: 202 bits (515), Expect = 1.800e-61
Identity = 98/177 (55.37%), Postives = 128/177 (72.32%), Query Frame = 0

Query:   40 PPQQPGAL---ASSTVFVGNLSWSTTSDDLRNFMSSVGEVVSAEVQSHADSGRSKGWGLVTYAEPTVAVAAIEQLNNVDFGGRPIHIRLDRKEVEASGGFPIFVGNLPWSTTDEDLQEIFSPYEPYDCHVKTNMAGRSRGFGILRFATPEMGQRAISDMQSYQIEGRPIQVREDREV 213
            P QQP A+   +++T+FVGNL+WSTTS+DL+ + ++VG V+S EVQSHAD+GRSKGW LVTY+    A  AI QL+  DF  RP+++R+DR  VE  GG  +FVGNLPWSTT+E L E+F  + P+D +VKT M GRSRGF I+RF TPE  + AI  MQ +  EGR + VR DR +
Sbjct:   10 PVQQPSAIQVPSTATLFVGNLAWSTTSEDLKKYCAAVGNVLSVEVQSHADTGRSKGWALVTYSTSEEAAVAITQLHGHDFNDRPLNVRVDRSNVEQMGGTLVFVGNLPWSTTNEQLLELFGQFNPFDVNVKTTMNGRSRGFAIVRFDTPERAEVAIGTMQGFIFEGRTLDVRIDRPL 186

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BLAST of mRNA_C-tenellus_contig10128.1.2 vs. uniprot
Match: A0A6U4FSY9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FSY9_9STRA)

HSP 1 Score: 193 bits (491), Expect = 2.430e-58
Identity = 85/165 (51.52%), Postives = 116/165 (70.30%), Query Frame = 0

Query:   47 LASSTVFVGNLSWSTTSDDLRNFMSSVGEVVSAEVQSHADSGRSKGWGLVTYAEPTVAVAAIEQLNNVDFGGRPIHIRLDRKEVEASGGFPIFVGNLPWSTTDEDLQEIFSPYEPYDCHVKTNMAGRSRGFGILRFATPEMGQRAISDMQSYQIEGRPIQVREDR 211
            + ++ +++GNL+W TT ++L  F+ SVGEV++A VQ HADS RSKGWGL TYA P  A  A+ QL+  +  GRP+H+R DR ++E  GG  IFVGN+PW  T E L E F P++P D HVKTNMAGRSRGF I +F   E+   A++ M   +++GR +QVRED+
Sbjct:    1 MENTDIYIGNLTWDTTDEELLEFLGSVGEVLNASVQRHADSQRSKGWGLATYAAPEGAALAVSQLDQSELKGRPVHVRFDRSKIENVGGVNIFVGNIPWEITSEQLYESFFPFQPIDVHVKTNMAGRSRGFAIAKFPNQELADAAVAQMNGKELQGRQLQVREDK 165

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BLAST of mRNA_C-tenellus_contig10128.1.2 vs. uniprot
Match: K8YWK2_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YWK2_NANGC)

HSP 1 Score: 180 bits (456), Expect = 2.080e-53
Identity = 86/163 (52.76%), Postives = 109/163 (66.87%), Query Frame = 0

Query:   49 SSTVFVGNLSWSTTSDDLRNFMSSVGEVVSAEVQSHADSGRSKGWGLVTYAEPTVAVAAIEQLNNVDFGGRPIHIRLDRKEVEASGGFPIFVGNLPWSTTDEDLQEIFSPYEPYDCHVKTNMAGRSRGFGILRFATPEMGQRAISDMQSYQIEGRPIQVREDR 211
            S TVFVGNLSW TT+D L   M + G V+  EVQ+H+D+GRSKGW LVT+     A  A+E L   +  GRP+++R DR E+E   GF +FVGNLPW  T   L+ +FS + PYD H+KTNM+GRSRGFG+LRF + E  QRAI  M    ++ R I VR DR
Sbjct:    2 SKTVFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVGNLPWDMTASGLRTVFSEFSPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDR 164

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BLAST of mRNA_C-tenellus_contig10128.1.2 vs. uniprot
Match: A0A4D9CR95_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CR95_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.110e-41
Identity = 72/142 (50.70%), Postives = 94/142 (66.20%), Query Frame = 0

Query:   70 MSSVGEVVSAEVQSHADSGRSKGWGLVTYAEPTVAVAAIEQLNNVDFGGRPIHIRLDRKEVEASGGFPIFVGNLPWSTTDEDLQEIFSPYEPYDCHVKTNMAGRSRGFGILRFATPEMGQRAISDMQSYQIEGRPIQVREDR 211
            M + G V+  EVQ+H+D+GRSKGW LVT+     A  A+E L   +  GRP+++R DR E+E   GF +FVGNLPW  T   L+ +FS + PYD H+KTNM+GRSRGFG+LRF + E  QRAI  M    ++ R I VR DR
Sbjct:    1 METAGRVLDVEVQAHSDTGRSKGWALVTFEAAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVGNLPWDMTASGLRTVFSEFRPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDR 142

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig10128.1.2 vs. uniprot

BLAST of mRNA_C-tenellus_contig10128.1.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JEX9_9PHAE	9.980e-108	83.89	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
D8LK87_ECTSI	4.190e-104	81.62	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A835ZG94_9STRA	3.650e-80	66.86	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YWJ3_9STRA	7.500e-75	66.07	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S2V6P6_9STRA	2.220e-63	59.30	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A7S2DGC6_9STRA	6.190e-62	53.45	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7S2GAK8_9STRA	1.800e-61	55.37	Hypothetical protein n=2 Tax=Florenciella parvula ...	[more]
A0A6U4FSY9_9STRA	2.430e-58	51.52	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
K8YWK2_NANGC	2.080e-53	52.76	Uncharacterized protein n=1 Tax=Nannochloropsis ga...	[more]
A0A4D9CR95_9STRA	1.110e-41	50.70	Uncharacterized protein n=2 Tax=Monodopsidaceae Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 51..124 e-value: 2.3E-23 score: 93.6 coord: 137..208 e-value: 2.2E-20 score: 83.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 138..205 e-value: 1.8E-16 score: 59.7 coord: 52..122 e-value: 2.1E-16 score: 59.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 136..212 score: 15.033
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 50..128 score: 16.654
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 35..132 e-value: 9.6E-25 score: 89.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 133..219 e-value: 6.1E-21 score: 76.9
None	No IPR available	PANTHER	PTHR48025:SF9	OS02G0815200 PROTEIN	coord: 49..208 coord: 40..125
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 49..208 coord: 40..125
None	No IPR available	CDD	cd00590	RRM_SF	coord: 138..208 e-value: 6.20031E-22 score: 83.5085
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 135..213
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 39..130

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig10128	contig	C-tenellus_contig10128:2..2043 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig10128.1.2	mRNA_C-tenellus_contig10128.1.2	Choristocarpus tenellus KU2346	mRNA	C-tenellus_contig10128 2..2422 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-tenellus_contig10128.1.2 ID=prot_C-tenellus_contig10128.1.2|Name=mRNA_C-tenellus_contig10128.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=219bp
MRTNGDKIGYENDLVSFSSSVSPHPHLLTPTAPLPIVLPPPQQPGALASS
TVFVGNLSWSTTSDDLRNFMSSVGEVVSAEVQSHADSGRSKGWGLVTYAE
PTVAVAAIEQLNNVDFGGRPIHIRLDRKEVEASGGFPIFVGNLPWSTTDE
DLQEIFSPYEPYDCHVKTNMAGRSRGFGILRFATPEMGQRAISDMQSYQI
EGRPIQVREDREVGGGGGG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf