mRNA_C-tenellus_contig9991.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9991.2.1
Unique NamemRNA_C-tenellus_contig9991.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9991.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9991contigC-tenellus_contig9991:1550..3100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1551
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size111
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790210.5118825-UTR-C-tenellus_contig9991:1549..27791680790210.5118825-UTR-C-tenellus_contig9991:1549..2779Choristocarpus tenellus KU2346UTRC-tenellus_contig9991 1550..2779 -
1680790210.5355399-UTR-C-tenellus_contig9991:2890..31001680790210.5355399-UTR-C-tenellus_contig9991:2890..3100Choristocarpus tenellus KU2346UTRC-tenellus_contig9991 2891..3100 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790210.523432-CDS-C-tenellus_contig9991:2779..28901680790210.523432-CDS-C-tenellus_contig9991:2779..2890Choristocarpus tenellus KU2346CDSC-tenellus_contig9991 2780..2890 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9991.2.1prot_C-tenellus_contig9991.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9991 2780..2890 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9991.2.1

>prot_C-tenellus_contig9991.2.1 ID=prot_C-tenellus_contig9991.2.1|Name=mRNA_C-tenellus_contig9991.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=37bp
MFEQLISTPYMTEAFEEFARKALCQESMLFMNEVSR*
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mRNA from alignment at C-tenellus_contig9991:1550..3100-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9991.2.1 ID=mRNA_C-tenellus_contig9991.2.1|Name=mRNA_C-tenellus_contig9991.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1551bp|location=Sequence derived from alignment at C-tenellus_contig9991:1550..3100- (Choristocarpus tenellus KU2346)
CGACCCTTCTCGATTCCTCCACTTGTACTTCACCATCCATTCCACCGCGT
CTGACCGTCATCAGCAAGTAGATCGTCTTCTCTTGCGTGGGCCCTTCAAA
CGTTTACTTTCACAAACAGCAAATCTCCCTAGCTCAAGAGCCGACGAATA
TCCCATCAACGCAGAAATGTAGCATTCAACAGCGAAGGTCAAGGAGAGGA
TAGACCTGCGATGTTTGAGCAATTGATTTCCACGCCCTACATGACTGAAG
CGTTTGAGGAGTTTGCTCGAAAGGCTCTGTGCCAGGAGTCGATGCTGTTT
ATGAATGAGGTATCAAGGTAAGTTGGGTCGTGTATATTTTTTATTTTTTA
TCCAGGGGTGAAACGATTTGAGATGCAAAAGGTCATGTCATGTTCTTGCC
ACGTATAATCGCTCTTCAGTGTGCGCGAGGACCCAAAGCGTTTAAGAGGG
GGTAGGGCCGCGTCTGTTTGGGGTCCAAAATTCCAATGTTTCGATTTTGA
TGAATTTGGGCTATCGTGTTGTTAGCAAGTTTCAATACCCCTGTTCCAGA
CACACCTTTCATAATCGTATACATTTTAGGTAACTGTGTTCACAGAGAAA
GCCGAAAACGGGCATAATAAACCTGTGGGAAGCTGAGCCCTAAATAGATG
AACAGGGCAAAATTCCTACTCTTTTAAATGCTTTGACTCTGAGATGTGGT
GTAACTTCAGGGAGGCGGGAGGGGTGTCTATAACTTGCTTATGGAGTGCT
GCACAGTCCGACAGTTTATGTACTAGATTTTTTCAATAACTAACCTGTGT
TACCATGTACTCCAAGAAACTGACCTCAATCTTGCTGTTCCATTCAGTGC
GGTGAATTTACAATCGTGTATGAGCACAATTTATAGTGGGTTGAAAAGTT
TTTCATCGTACTACTACTACTGCTTACCGTCATTCTTATTATAATTCATG
TTAGCCTCGGGACTGTCCTGACCAGTGGTCAGAGAGGCACTACATACACA
CTATACACTTCACCACTTCTCACACCTACCCTACCCTACTGTAATGAACT
GATGCAGTACGATAAAATCGCGTTTGCTACGTTGACGCCTTAGTTCTCTC
TTGCATTGAGTTCAACCATCCAACTGCTCATCCCTCCGCCACTTCCCTCG
AACCTTTTTTGCTGGGGCCAGTCTTGATGCTCTGAATGGCAATGTACCTC
TTTTTGGCAATATACCTTTTTTTGAGTTTCCCGCTTTTGTGGTACAGTGG
CAGAAAGAATTGAAGTGGTACGGGAGGTACAATCAGCGGTCCCTACTGCA
GTGTACCTTGATTTGTTAAGAAATATACTTCCCTTTAAAGGGTTAGGGTT
AGGGTTAGGGTTAGATTTTAGCGCTGGGAGAGCATTGTCCATCCAACCAC
TTAGCTAGGAGAAATGATCTACTCTGTTGAACTGAAGGTTTGAAAACATG
CACACACAGTCTATTGGGAGGAGTGCAAGGATGGTGCAAGGAAATGCCAA
AGCACCTTGAGGAAAGCCCTGAAGCCGATCACACAGTTACACTACACGGG
T
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Coding sequence (CDS) from alignment at C-tenellus_contig9991:1550..3100-

>mRNA_C-tenellus_contig9991.2.1 ID=mRNA_C-tenellus_contig9991.2.1|Name=mRNA_C-tenellus_contig9991.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=111bp|location=Sequence derived from alignment at C-tenellus_contig9991:1550..3100- (Choristocarpus tenellus KU2346)
ATGTTTGAGCAATTGATTTCCACGCCCTACATGACTGAAGCGTTTGAGGA
GTTTGCTCGAAAGGCTCTGTGCCAGGAGTCGATGCTGTTTATGAATGAGG
TATCAAGGTAA
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